SIT Sequence Interpretation Tools

Service Content Developer Server
BLAST Sequence Similarity Search NCBI BiC, Kyoto U.
FASTA Sequence Similarity Search W. Pearson BiC, Kyoto U.
MOTIF Sequence Motif Search BiC, Kyoto U. BiC, Kyoto U.
TFSEARCH Transcription Factor Binding Site Search Y. Akiyama CBRC, AIST
CLUSTALW Multiple Sequence Alignment J.Thompson et al. BiC, Kyoto U.
MAFFT Multiple Sequence Alignment K. Katoh BiC, Kyoto U.
PRRN Multiple Sequence Alignment O. Gotoh BiC, Kyoto U.
Parallel PRRN Multiple Sequence Alignment O. Gotoh HGC, U.Tokyo
PSORT Prediction of Protein Sorting Signals K. Nakai HGC, U.Tokyo
SOSUI Prediction of Transmembrane Segments S. Mitaku Mitaku Lab., TUAT
TSEG Prediction of Membrane Proteins D. Kihara BiC, Kyoto U.
PLOC Prediction of Protein Localization Sites K.-J. Park BiC, Kyoto U.
PDB highlight Simple Visualizer for Protein Substructures K. Sato HGC, U.Tokyo
KCaM Carbohydrate Sequence Matcher K.F. Aoki BiC, Kyoto U.
EGassembler Generation of EST Consensus Contigs Ali Masoudi-Nejad HGC, U.Tokyo
KAAS KEGG Automatic Annotation Server Y. Moriya BiC, Kyoto U.
GENIES Gene Network Inference Y. Yamanishi BiC, Kyoto U.
[ GenomeNet | KEGG | Bioinformatics Center | Human Genome Center ]