KEGG ORTHOLOGY: K11098

ORTHOLOGY: K11098

Entry

K11098 KO

Name

SNRPF, SMF

Definition

small nuclear ribonucleoprotein F

Pathway

ko03040

Spliceosome

Module

M00351	Spliceosome, U1-snRNP
M00352	Spliceosome, U2-snRNP
M00354	Spliceosome, U4/U6.U5 tri-snRNP
M00355	Spliceosome, 35S U5-snRNP
M00398	Sm core complex

Brite

KEGG Orthology (KO) [BR:ko00001]
Genetic Information Processing
  Transcription
   03040 Spliceosome
    K11098  SNRPF, SMF; small nuclear ribonucleoprotein F
KEGG pathway modules [BR:ko00002]
Structural complex
  Genetic information processing
   Spliceosome
    M00351  Spliceosome, U1-snRNP [BR:ko03041]
     K11098  SNRPF, SMF; small nuclear ribonucleoprotein F
    M00352  Spliceosome, U2-snRNP [BR:ko03041]
     K11098  SNRPF, SMF; small nuclear ribonucleoprotein F
    M00354  Spliceosome, U4/U6.U5 tri-snRNP [BR:ko03041]
     K11098  SNRPF, SMF; small nuclear ribonucleoprotein F
    M00355  Spliceosome, 35S U5-snRNP [BR:ko03041]
     K11098  SNRPF, SMF; small nuclear ribonucleoprotein F
    M00398  Sm core complex [BR:ko03032 ko03041]
     K11098  SNRPF, SMF; small nuclear ribonucleoprotein F
Spliceosome [BR:ko03041]
Complex A
  U1 snRNP components
   Sm proteins
    K11098  SNRPF, SMF; small nuclear ribonucleoprotein F
  U2 snRNP components
   Sm proteins
    K11098  SNRPF, SMF; small nuclear ribonucleoprotein F
Complex B
  U1 snRNP components
   Sm proteins
    K11098  SNRPF, SMF; small nuclear ribonucleoprotein F
  U2 snRNP components
   Sm proteins
    K11098  SNRPF, SMF; small nuclear ribonucleoprotein F
  U4/U6.U5 tri-snRNP components
   Sm proteins
    K11098  SNRPF, SMF; small nuclear ribonucleoprotein F
Complex C
  U2 snRNP components
   Sm proteins
    K11098  SNRPF, SMF; small nuclear ribonucleoprotein F
  U4/U6.U5 tri-snRNP components
   Sm proteins
    K11098  SNRPF, SMF; small nuclear ribonucleoprotein F
DNA replication proteins [BR:ko03032]
Eukaryotic Type
  DNA Replication Termination Factors
   Telomerase complex (Fungi)
    Sm core complex
     K11098  SNRPF, SMF; small nuclear ribonucleoprotein F

Other DBs

GO:

0030532

Genes

HSA:	6636(SNRPF)
PTR:	452143(SNRPF)
PPS:	100993647
GGO:	101124905(SNRPF)
PON:	100451758
MCC:	716917
MMU:	69878(Snrpf)
RNO:	680737(Snrpf)
CFA:	482609(SNRPF)
AML:	100469419
FCA:	101091795
BTA:	615240(SNRPF)
SSC:	100155855(SNRPF)
ECB:	100630068
MDO:	100017542
SHR:	100930019
GGA:	417916(SNRPF)
MGP:	100547816
ACS:	100566616
XLA:	380595(snrpf)
XTR:	448659(snrpf)
DRE:	445404(snrpf)
TRU:	101074074
OLA:	101170138
BFO:	BRAFLDRAFT_271061
CIN:	100181243
SPU:	592177
DME:	Dmel_CG16792(SmF)
DPO:	Dpse_GA14154
DAN:	Dana_GF12081
DER:	Dere_GG22599
DPE:	Dper_GL11267
DSE:	Dsec_GM20378
DSI:	Dsim_GD15242(Dsim_DebB) Dsim_GD15243
DWI:	Dwil_GK22120
DYA:	Dyak_GE13467
DGR:	Dgri_GH22983
DMO:	Dmoj_GI18952
DVI:	Dvir_GJ21558
AGA:	AgaP_AGAP002658
CQU:	CpipJ_CPIJ002691
AME:	725880(DebB)
NVI:	100117043(Snrpf)
TCA:	658284
API:	100162422
PHU:	Phum_PHUM140100
ISC:	IscW_ISCW012036
CEL:	CELE_ZK652.1(snr-5)
CBR:	CBG12250(Cbr-snr-5)
BMY:	Bm1_22805
TSP:	Tsp_11073
SMM:	Smp_060910
NVE:	NEMVE_v1g163667
HMG:	100198581
TAD:	TRIADDRAFT_26794
AQU:	100640351
ATH:	AT2G14285 AT4G30220(RUXF)
ALY:	ARALYDRAFT_899645 ARALYDRAFT_913456
GMX:	100305783 100499965
MTR:	MTR_4g128050
CSV:	101204969
RCU:	RCOM_0017870 RCOM_0851900
POP:	POPTR_578592
VVI:	100263985
OSA:	4328484 4351052
DOSA:	Os02t0177500-01(Os02g0177500) Os11t0657300-01(Os11g0657300)
BDI:	100825892 100841438
SBI:	SORBI_03g003900(SORBIDRAFT_03g003900) SORBI_04g005200(SORBIDRAFT_04g005200)
ZMA:	100284147 100285502
SMO:	SELMODRAFT_228181 SELMODRAFT_228413
PPP:	PHYPADRAFT_208472
CRE:	CHLREDRAFT_131463(SMPF)
VCN:	VOLCADRAFT_109863
OLU:	OSTLU_34727
CME:	CMQ171C
SCE:	YPR182W(SMX3)
AGO:	AGOS_AEL274C
ERC:	Ecym_2813
KLA:	KLLA0E04929g
LTH:	KLTH0A00770g
PPA:	PAS_chr2-2_0429
VPO:	Kpol_1013p34
ZRO:	ZYRO0D00990g
CGR:	CAGL0G09933g
NCS:	NCAS_0A15220(NCAS0A15220)
NDI:	NDAI_0J00380(NDAI0J00380)
TPF:	TPHA_0I03270(TPHA0I03270)
TBL:	TBLA_0B04935(TBLA0B04935)
TDL:	TDEL_0H00320(TDEL0H00320)
KAF:	KAFR_0B00320(KAFR0B00320)
DHA:	DEHA2E09878g
PIC:	PICST_46368
CDU:	CD36_52900
COT:	CORT_0B02140
YLI:	YALI0A05423g
CLU:	CLUG_05171
NCR:	NCU01614
SMP:	SMAC_02352
PAN:	PODANSg7040
MTM:	MYCTH_2316657
MGR:	MGG_03895
FGR:	FG01381.1
NHE:	NECHADRAFT_57133
VAL:	VDBG_01548
BFU:	BC1G_05998
NFI:	NFIA_090730
AFM:	AFUA_2G15500
AOR:	AOR_1_1880194
ANG:	ANI_1_764134(An15g05680)
AFV:	AFLA_015510
ACT:	ACLA_074440
PCS:	Pc21g02990
CIM:	CIMG_00256
CPW:	CPC735_059220
AJE:	HCAG_01049
ZTR:	MYCGRDRAFT_75738
TML:	GSTUM_00003354001
SPO:	SPBC3E7.14(smf1)
CNE:	CND03220
CNB:	CNBD3130
CGI:	CGB_D5780C
PPL:	POSPLDRAFT_38500
LBC:	LACBIDRAFT_181948
CCI:	CC1G_00096
SCM:	SCHCODRAFT_39758
MGL:	MGL_2967
ECU:	ECU04_0790
EIN:	Eint_040740
EHE:	EHEL_040700
NCE:	NCER_101246
MBR:	MONBRDRAFT_13957
DDI:	DDB_G0278821(snrpF)
DPP:	DICPUDRAFT_86021
EHI:	EHI_188130(75.t00014)
EDI:	EDI_208880
PFA:	PF11_0280
PFD:	PFDG_04439
PFH:	PFHG_01888
PCB:	PC000324.03.0
PBE:	PB000750.03.0
PKN:	PKH_092460
PVX:	PVX_091960
PCY:	PCYB_093300
TAN:	TA21000
TPV:	TP01_0376
BBO:	BBOV_IV005760(23.m05936)
TGO:	TGME49_013410
TET:	TTHERM_00549650
PTM:	GSPATT00012630001 GSPATT00013361001
TBR:	Tb09.211.1695
TCR:	507007.74 509551.64
LIF:	LINJ_35_4530
LDO:	LDBPK_354530
LMI:	LMXM_34_4460
LBZ:	LBRM_34_4440
GLA:	GL50803_4954
PTI:	PHATRDRAFT_20167
TPS:	THAPSDRAFT_6522
PIF:	PITG_23192

» show all

Reference

PMID:10025403

Authors

Kambach C, Walke S, Young R, Avis JM, de la Fortelle E, Raker VA, Luhrmann R, Li J, Nagai K

Title

Crystal structures of two Sm protein complexes and their implications for the assembly of the spliceosomal snRNPs.

Journal

Cell 96:375-87 (1999)

Reference

PMID:19239890

Authors

Wahl MC, Will CL, Luhrmann R

Title

The spliceosome: design principles of a dynamic RNP machine.

Journal

Cell 136:701-18 (2009)

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Ontology (5)   
   KEGG BRITE (4)   
   GO (1)   
Pathway (202)   
   KEGG PATHWAY (2)   
   KEGG MODULE (200)   
Gene (356)   
   KEGG GENES (172)   
   KEGG DGENES (21)   
   KEGG EGENES (158)   
   KEGG MGENES (5)   
Protein sequence (147)   
   UniProt (147)   
Literature (2)   
   PubMed (2)   
All databases (712)   

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