KEGG   Aeromonas hydrophila MX16A: BOQ57_00980
Entry
BOQ57_00980       CDS       T04629                                 
Name
(GenBank) DNA helicase II
  KO
K03657  ATP-dependent DNA helicase UvrD/PcrA [EC:5.6.2.4]
Organism
aaj  Aeromonas hydrophila MX16A
Pathway
aaj03420  Nucleotide excision repair
aaj03430  Mismatch repair
Brite
KEGG Orthology (KO) [BR:aaj00001]
 09120 Genetic Information Processing
  09124 Replication and repair
   03420 Nucleotide excision repair
    BOQ57_00980
   03430 Mismatch repair
    BOQ57_00980
 09180 Brite Hierarchies
  09182 Protein families: genetic information processing
   03400 DNA repair and recombination proteins [BR:aaj03400]
    BOQ57_00980
Enzymes [BR:aaj01000]
 5. Isomerases
  5.6  Isomerases altering macromolecular conformation
   5.6.2  Enzymes altering nucleic acid conformation
    5.6.2.4  DNA 3'-5' helicase
     BOQ57_00980
DNA repair and recombination proteins [BR:aaj03400]
 Prokaryotic type
  SSBR (single strand breaks repair)
   NER (nucleotide excision repair)
    GGR (global genome repair) factors
     BOQ57_00980
   MMR (mismatch excision repair)
    Other MMR factors
     BOQ57_00980
SSDB
Motif
Pfam: UvrD-helicase UvrD_C AAA_19 UvrD_C_2 PcrA_UvrD_tudor AAA_30 Viral_helicase1 AAA_12
Other DBs
NCBI-ProteinID: APJ13550
Position
203962..206133
AA seq 723 aa
MDVSTLLDGLNDKQRDAVAAPRCNLLVLAGAGSGKTRVLVHRIAWLMQVERCSPFSIIAV
TFTNKAAAEMRGRVEKVIGDGVRGMWIGTFHGIAHRLLRAHHLDAGLPQDFQILDSDDQY
RLIRRVLKALNLDEKHWAPRAVMGYINGKKDEGLRPGDIDLYGDPVTRTYQQIYKTYQET
CDRSGLVDFAELLLRAHELWLNKPHILEHYRDRFQNILVDEFQDTNGIQYAWLRMLAGYS
GKVMIVGDDDQSIYGWRGAKIENIQRFLTDYQGAETIRLEQNYRSTANILKAANCVIANN
AERLGKELWTEGAEGEPISLYAAFNEVDEARFVVGRLKDWKEKGGLLADCAILYRSNAQS
RVLEEALMQDAMPYRIYGGLRFFERQEIKDAMAYLRLINNRGDDASFERVVNTPTRGIGD
RTLEILRNNARDQGQNLWQSAKTLLNDKVLTGRAGNAVRGFVDLIDALEEQVSLLPLHQQ
ADIAIQHSGLKAMYLAEKGEKSQARVENLDELVTACRQYQRPDELEDMSDLSAFLAHAAL
ESGENQADEYADAVQLMTLHSAKGLEFPLVLLVGVEEGMFPSQQSTEESGRLEEERRLCY
VGMTRAMEKLYICYAESRRIYGREMFHKPSRFIREMPAECLEEIRLRTQVSRPTQYGRFS
QNEVQQSFDASGIKLGQRVLHPKFGEGIVLNFEGVGQQSRVQIQFDDVGAKWLVTAYARL
EAL
NT seq 2172 nt   +upstreamnt  +downstreamnt
atggacgtttcaaccctgctcgacgggctcaatgacaagcaaagagacgcggtggcggcc
ccccgttgcaacctactggtgctggccggtgccggttcgggcaagacccgggtgctggtg
caccgtatcgcctggctgatgcaggtagaacgctgttcacccttctccatcatcgcggtg
acctttaccaacaaggcggcggccgagatgcgtggccgggtcgagaaggtgatcggtgac
ggcgtgcgcggcatgtggatcggcaccttccacggcatcgcccaccgattgctgcgggcc
caccatctggatgcggggctgccgcaggatttccagatcctcgactccgacgaccagtac
cggctgatccgccgggtgctcaaggcgctcaacctcgacgagaagcactgggccccgcgc
gccgtgatgggctacatcaacggcaagaaggacgaggggctgcgccctggcgacatcgac
ctctatggcgatcccgtcacccgcacctatcagcagatctacaagacctatcaggagacc
tgcgatcgctccgggctggtggattttgccgagctgctgctgcgcgcccacgagctgtgg
ctcaacaagccccacatcctcgagcactaccgcgatcgcttccagaacatcctggtggac
gagttccaggataccaacggcatccagtacgcctggctgcggatgctggcaggatattcc
ggcaaggtgatgatcgtcggcgacgatgaccagtccatctacggctggcgcggcgccaag
atcgagaacatccagcgctttctgaccgactatcagggcgccgagaccatccgcctcgag
cagaactaccgctccaccgccaacatcctgaaagccgccaactgcgtcatcgccaacaac
gccgagcgccttggcaaggagctgtggaccgagggcgccgagggcgagccgatttcgctc
tacgccgctttcaacgaggtggacgaggcacgcttcgtggttggccgcctcaaggactgg
aaagagaaaggtggcttgctcgccgactgcgccatcctctatcgctccaacgcccagtcg
cgggtgctggaagaggcgctgatgcaggacgccatgccctaccgcatctatggcggcctg
cgcttcttcgagcgccaggaaatcaaggacgccatggcgtacctgcgccttatcaacaac
cgtggcgacgacgccagcttcgagcgggtggtcaataccccgacccgcggcatcggcgat
cgcaccctggagatactgcgcaacaacgcccgcgatcagggccagaacctgtggcagtcc
gccaagaccctgctcaatgacaaggtgctgaccggtcgtgccggcaacgcggtgcgcggt
tttgtcgatctgatcgacgcgctggaggagcaggtctccctgctgccgctgcatcagcag
gcggatatcgccatccagcactccggcctcaaggcgatgtatctggcggaaaagggcgag
aaatcccaggcgcgggtagagaacctggacgaactggtcaccgcctgccgccagtaccag
cgcccggacgagctggaagacatgagtgatctctccgccttcctcgcccacgcggcgctg
gagtccggtgagaatcaggcggacgaatatgccgacgcggtgcagttgatgaccctgcac
agcgccaagggcttggagttcccgctggtgctgctggtcggggtggaagaaggcatgttc
cccagccagcaatccaccgaggagtcgggccgactggaagaggaaaggcgtctctgttac
gtgggcatgacccgcgccatggagaagctctacatctgttacgcagagagccgccgcatc
tacggccgcgagatgttccacaagccgagccgctttatccgcgagatgcccgccgaatgt
ctggaagagatccggctgcgcacccaggtgagccgccccacccagtacggccgctttagc
cagaacgaggtgcagcagagcttcgatgccagcggcatcaaactcggccagcgggtgctc
catccgaaattcggggaaggaatcgtgctcaacttcgaaggggtcggccagcagagccgg
gtgcagatccagttcgacgacgtcggcgccaagtggctggtgactgcctatgccagattg
gaagcgctctga

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