KEGG   Alternaria alternata: CC77DRAFT_1034272
Entry
CC77DRAFT_1034272 CDS       T05291                                 
Name
(RefSeq) nuclear matrix protein
  KO
K12878  THO complex subunit 1
Organism
aalt  Alternaria alternata
Pathway
aalt03013  Nucleocytoplasmic transport
aalt03040  Spliceosome
Brite
KEGG Orthology (KO) [BR:aalt00001]
 09120 Genetic Information Processing
  09121 Transcription
   03040 Spliceosome
    CC77DRAFT_1034272
  09122 Translation
   03013 Nucleocytoplasmic transport
    CC77DRAFT_1034272
 09180 Brite Hierarchies
  09182 Protein families: genetic information processing
   03019 Messenger RNA biogenesis [BR:aalt03019]
    CC77DRAFT_1034272
   03041 Spliceosome [BR:aalt03041]
    CC77DRAFT_1034272
Messenger RNA biogenesis [BR:aalt03019]
 Eukaryotic type
  mRNA surveillance and transport factors
   Transport factors
    TREX complex
     CC77DRAFT_1034272
Spliceosome [BR:aalt03041]
 Complex C
  Other components
   EJC/TREX
    CC77DRAFT_1034272
 Other splicing related proteins
  Spliceosome associated proteins (SAPs)
   TREX complex
    CC77DRAFT_1034272
SSDB
Motif
Pfam: efThoc1
Other DBs
NCBI-GeneID: 29112449
NCBI-ProteinID: XP_018381630
JGI: 1034272
UniProt: A0A177DBD6
Position
Unknown
AA seq 618 aa
MSPPNVLPADAVAPRLDYLLRRARDVKQSTAIDPPLQVSELVPENEPLLGEIEGGKEVRT
LAVESAAKSVFYANLGSTRIEEPAFVTVWNLLDILQYCGDRDLCSPQLVLLLIEELLDSQ
SISGCRVVFNFLESRRETIIAINSKNKDLVILRLCNELLRRLSRAEDPVFCGRVYIFMFQ
SFPLGDKSSVNLRGNFHVENVTTFEDFLKESKPEEDSMQIDIDGPAPATKEDSKSEEPAI
LSGDIDKSKDAKPTTLDTESLYPVFWSLQHSFSNPPRLFEEDNFKQFQKSLEATLAKFRE
VPKVIQAGDSERKKGQKSREGDDYDAFANSFNPKYLTSRDLFKLELSDLAFQRHILVQAL
ILIDFLLTLTEGSKSKPFYQNAQKAMQYNFTLREEDTEWALGIKTAIANYLQEGPDGKFY
YRMVDTVLSRDKNWVRWKMENCQPFTRDRVPPAEFQQAKSGAQKAVVAKKASKPMGVPST
LNFLHNNDAENGLSQLRQRDRFNVPNAESYAKKVKMTDLDLEMTDAEEEKRQAGDKKSSY
VWRGLRLASKTQLSSFDRIEHCKGLEALQPATSSIEATGVDAAPTTSDDQGVIPQDEHQS
VEEQRPDQRSQVTAEPAA
NT seq 1857 nt   +upstreamnt  +downstreamnt
atgtcgccgcctaacgtgcttcccgccgacgcggtagccccaagacttgactacttattg
cgacgtgcccgtgacgtcaagcaaagtacggcgattgaccctccactccaggtttccgag
cttgtaccggagaacgagcctcttctcggcgagatcgaaggagggaaagaagtacggacg
cttgctgtcgagagtgcagctaagagtgttttctatgccaaccttggttcgactcggatt
gaggagccggcctttgtaactgtttggaatctactggatatcctgcagtattgcggggat
cgagacctctgctctccgcaactcgtcctcctgctcattgaagagttgcttgacagccag
tcaatctcaggatgtcgtgtggtattcaactttctcgagtcgaggagagaaaccatcatc
gcgatcaactccaagaataaggaccttgttatcttgagattgtgcaatgagctgctccgc
cggctatctcgcgcggaagatccagtcttctgtgggcgtgtctatatattcatgttccag
agctttcccttgggcgacaagagttcggtaaacctgcggggaaacttccacgtcgaaaac
gtaacgacattcgaggactttctgaaggaatcaaaaccggaagaggactctatgcaaatc
gatatcgacgggcctgctcctgctaccaaggaagattcgaagtcagaggagccagccatc
ctgtctggcgatatcgacaaaagcaaagatgcgaaacctaccacacttgataccgagtct
ctctaccccgtgttctggtctttacagcactctttctcaaatccaccaaggctttttgaa
gaggacaatttcaagcaatttcagaagagcttggaggcgacgctagccaaattcagggag
gtgccaaaagtcatacaggccggagattcagagcgaaagaagggacaaaaatcacgggaa
ggcgacgactacgatgcattcgccaactcctttaatcctaaatatctcacaagccgtgac
ctgttcaaacttgagctgagtgatctcgccttccaacgtcacatcctggtccaagcactg
atactcatcgacttcctgttgaccctgaccgaggggtccaagagcaagccattctaccaa
aatgcgcagaaagcgatgcagtacaatttcacactccgcgaggaagacaccgagtgggca
ttgggcatcaagaccgccatcgcaaattacctgcaggaaggcccagatggcaaattctac
taccggatggtggataccgtgctttcccgcgacaaaaactgggtacgatggaagatggag
aactgtcagccgttcacgcgagatagagtgcccccagcagaattccagcaagccaaatct
ggggcacagaaagctgttgttgctaagaaagcctcgaagcctatgggggtacctagtact
ttgaacttcctccacaacaacgatgcagagaacggactctctcagctacgacaacgtgac
aggttcaatgtgccaaatgcagagtcatatgcaaaaaaggtcaagatgaccgacttagac
ctggaaatgactgacgcagaggaggagaagcggcaagcgggggacaagaagtctagctat
gtctggcgaggccttcgtcttgcttcaaagacgcagctaagctcctttgatagaattgag
cattgcaaagggctggaggctcttcagccggccacctcttccattgaggcgacgggtgtt
gacgctgcacccactacttcggatgaccagggggtaattccgcaagacgagcatcagagc
gtcgaggagcagcggcccgaccaacgcagtcaagtgactgcggaaccagcggcgtag

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Ontology (3)   
   KEGG BRITE (3)   
Pathway (2)   
   KEGG PATHWAY (2)   
Genome (1)   
   KEGG GENOME (1)   
Gene (5)   
   KEGG ORTHOLOGY (1)   
   NCBI-PROTEINID (1)   
   NCBI-Gene (1)   
   JGI (1)   
   OC (1)   
Protein sequence (2)   
   UniProt (1)   
   RefSeq(pep) (1)   
DNA sequence (1)   
   RefSeq(nuc) (1)   
Protein domain (1)   
   Pfam (1)   
All databases (15)   

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