KEGG   Alternaria alternata: CC77DRAFT_1066554
Entry
CC77DRAFT_1066554 CDS       T05291                                 
Name
(RefSeq) DNA-directed RNA polymerase II subunit RPB1
  KO
K03006  DNA-directed RNA polymerase II subunit RPB1 [EC:2.7.7.6]
Organism
aalt  Alternaria alternata
Pathway
aalt03020  RNA polymerase
aalt03420  Nucleotide excision repair
Brite
KEGG Orthology (KO) [BR:aalt00001]
 09120 Genetic Information Processing
  09121 Transcription
   03020 RNA polymerase
    CC77DRAFT_1066554
  09124 Replication and repair
   03420 Nucleotide excision repair
    CC77DRAFT_1066554
 09180 Brite Hierarchies
  09182 Protein families: genetic information processing
   03021 Transcription machinery [BR:aalt03021]
    CC77DRAFT_1066554
   03400 DNA repair and recombination proteins [BR:aalt03400]
    CC77DRAFT_1066554
Enzymes [BR:aalt01000]
 2. Transferases
  2.7  Transferring phosphorus-containing groups
   2.7.7  Nucleotidyltransferases
    2.7.7.6  DNA-directed RNA polymerase
     CC77DRAFT_1066554
Transcription machinery [BR:aalt03021]
 Eukaryotic type
  RNA polymerase II system
   RNA polymerase II
    Core subunits
     CC77DRAFT_1066554
DNA repair and recombination proteins [BR:aalt03400]
 Eukaryotic type
  SSBR (single strand breaks repair)
   NER (nucleotide excision repair)
    TCR (transcription coupled repair) factors
     DNA-directed RNA polymerase II complex
      CC77DRAFT_1066554
SSDB
Motif
Pfam: RNA_pol_Rpb1_1 RNA_pol_Rpb1_5 RNA_pol_Rpb1_2 RNA_pol_Rpb1_6 RNA_pol_Rpb1_3 RNA_pol_Rpb1_7 RNA_pol_Rpb1_4 RNA_pol_Rpb1_R
Other DBs
NCBI-GeneID: 29114503
NCBI-ProteinID: XP_018380472
JGI: 1066554
UniProt: A0A177D6U2
Position
Unknown
AA seq 1742 aa
MPPGAPQVSKCPLRTIKEIQFGLLSPEEIKAMSVVHIIYPETMDEQKQKPREQGLNDPKL
GTIDRMYSCATCKEDIQTCPGHFGHIELHTPVFHVGFVVKIKKLLETVCHTCGLIKADFN
HPDWAAAAKTKDAKKRFDKIWRMSKGKTVCMQDVDDGSDKNKIPKIPHGGCGSKQPDSIR
KEGLKLTGTWKQSKKDDDDGQGDRKEVITPKQAQTIFKLMSDNTLALLGLNADYARPEWM
ILDVLPVPPPPVRPSISVDGTGQGMRGEDDLTYKLGDIIRANGRVAECQQEGSPAHVTAE
FEALVQYHVATYMDNDANGVPQAMQKSGRPLKTIRGRLKGKEGRLRGNLMGKRVDFSART
VITGDPNLSLDQVGVPRSIARTLTYPEVVTKFNISKLTNLVRNGPNQHPGANYVIKADGV
RLDLKHNKNLDDLRLQYGWKVERHIDDDDVIIFNRQPSLHKESMMGHRVKVMPYSTFRLN
LSVTSPYNADFDGDEMNLHVPQSDETRAEVQNLCMVPKQIVSPQKNQPLMGIVQDTLLGV
YKMSRRDNFIPIEQVMPILMWVPDWDGIVPEPAILKPRPLWTGKQIISMAFPREVNIEKK
EADSKPSAYNDLVDKSFCIKGGQLLFGQVTKKIVGASAGGVIHIIFNELGPDAAVKFFNA
CQRICNWWLLHYGFSFGVGDTIPDPATSDKIANEIAKSKAKVEEIIETATKDALEPMPGM
TIRGTFESKVQKFLNEGREGGGTAAQTSLKDFNNVVQTVVSGSKGSTVNISQMVALVGQQ
AVEGQRIPYGFKYRTLPHFSKDDYSPESRGFVENSYLRGLTPSEFFFHAMAGREGLIDTA
VKTAETGYIQRRLVKALEDVMVKYDGTVRNSMGDIVEFIYGEDGLDGAHIESQSMDIIMA
SEADFEAGYKLDVLGTDHPEIPVTKLEGATMFQGDVEVQRALDEEFEQIKIDREYLRATA
SDEDLESFQLPLNIQRMIRSAQARFGINPEKAVSNLNPIETIRQVKETLERLVVIRGTDE
LSREAQDSATYLFKSHLRARLAFKKLVVQHRLSKEALNYVLGELEDRFLKAAVAPGEMVG
VLAAQSIGEPATQMTLNTFHFAGVSSKNVTLGVPRLKEILNIAANIKTPSMLVRQTDTKA
TQQDAKRLRSTIELTTLRSLTQAVELYYDPDIQSTLVEEDQDMVESYFILPEEDEVIESQ
SKWLLRIILDRKKLLDKSITIGEVAGKIKEEFKPNLAVIFSDENADEQVMRVRFIWDQNL
QKDDEDEDERDERWMRKLEKHLLDDVTLRGVRGIERAFIRDHIVTVELPDRSLVHSKSKD
ECKEWVLDTTGTALAEVLAIEGVDATKTYSNSFIEILGVLGIEAARAGLLKELGMVLSFD
GSYVNHRHMALLVDIMCQRGLLMAITRHGINRNDTGALMRCSFEETVEILLEAAGFGELD
DCRGVSENIMLGQLAPMGTGEFDVVMDNAMLLTMVEDNSKMMGGAAGAGNYLDNGAATPY
DLGSPTYEGGMGVGSYDQVSFSPIAAAGGGDDPGGFTAYGGSYGGGGFSPYDGGRSPGGS
GFTGMSPGFTSPVSPGFSPTSPGYSPTSPGTASPRFAATSPGYMASPTSPHYSPTSPRYG
SPTSPSYSPTSPAGYSPTSPQYSPTSPNYSPTSPTFMGGATSPAYSPTSPQYSPTSPQYS
PTSPQYQATSDRRSPTSPTSPQYSPTSPRYSPTSPAGSFSPTSPRYSPTSPGPAYSPTSP
KQ
NT seq 5229 nt   +upstreamnt  +downstreamnt
atgcctccgggcgcgccccaggtgtcgaaatgtccgctccggaccatcaaggagatccag
ttcgggctgctctctcccgaggagatcaaggccatgagtgtcgtccacatcatctacccg
gagaccatggacgagcagaagcagaaaccgcgtgagcaaggtctcaacgaccccaagctc
ggcactatcgaccgcatgtactcgtgcgccacgtgcaaggaagatatccagacctgcccc
ggtcactttggtcacatcgagctgcacacacccgtctttcacgtcggtttcgttgtgaag
atcaagaagctcctcgagaccgtgtgccatacctgtggtctcatcaaggctgacttcaac
catcctgactgggccgctgccgccaagaccaaggatgcgaagaagcgttttgacaagatc
tggcgcatgtccaagggcaagaccgtgtgcatgcaggacgtagacgacggaagtgacaaa
aacaagatccccaagattcctcacggcggctgtggcagcaagcaacctgactccatccgc
aaggagggcttgaagctcacaggcacctggaaacagagcaagaaggacgacgatgacggc
caaggtgaccgcaaagaagtcattacaccaaagcaggcacagaccatcttcaagctcatg
tccgacaacacacttgcactgctcggcctgaacgccgactacgcacgtcctgagtggatg
atcctcgatgttctgccagtgcctccgcctccggttcgccccagtatctccgtcgatggt
accggccagggtatgcgtggagaggacgatttgacatacaagctaggagatatcatccgt
gccaacggtcgtgttgcagaatgtcagcaggagggttcacctgctcacgtaacagccgaa
ttcgaggcactggtccaataccacgttgctacctacatggacaacgacgccaatggtgtt
ccacaggccatgcagaagtccggccgtccgctcaagactattcgtggtcgattaaagggc
aaggaaggccgtcttcgtggtaacttgatgggaaagcgtgtcgatttctccgcacgtact
gtcatcactggtgaccctaacctgtctctggaccaagtcggtgtgccccgatccattgca
cgcactctgacctaccctgaggttgtcaccaagttcaatatcagcaagctgacaaacttg
gtacgcaatggtcccaaccagcaccctggtgccaactacgtcattaaagccgacggtgtt
cgtcttgatcttaagcacaacaagaaccttgacgacctgcggctgcaatacggctggaag
gtcgaacgccatattgacgacgacgatgtcatcatcttcaatcgtcagccctctctgcac
aaagagtctatgatgggacatcgtgtcaaagtcatgccctactccaccttccgtcttaac
ttgtcggtcacatcaccctacaacgccgatttcgatggtgacgagatgaacctccacgtt
ccccagagtgatgagactcgcgctgaggttcaaaacctgtgcatggttcccaagcagatt
gtatcgccgcagaagaaccagcccttgatgggtatcgtgcaggacacgcttctcggtgtt
tacaagatgagtcgtcgtgacaacttcattcctattgaacaggtcatgcctattctcatg
tgggtacctgactgggatggcatcgttccagagccagccattctgaagcctcgaccactc
tggactggtaagcagattatcagcatggccttcccgcgcgaggtcaacattgagaagaag
gaggccgactctaagcccagtgcgtacaatgacctcgtcgacaagtcattctgcatcaag
ggtgggcaacttctctttggtcaggtcacaaagaagattgtcggtgcttctgcaggcggt
gttatccacatcattttcaacgagcttggaccggatgcagcagtcaaattcttcaacgcc
tgccagcgcatctgcaactggtggcttcttcactatggtttcagtttcggtgtgggtgac
accatcccggatccggctacctcagacaagattgccaacgagattgcaaagtccaaggct
aaggtcgaagagattatcgaaacagctaccaaggatgcgctcgagcctatgcctggcatg
acgatccgcggtacgttcgaatccaaggtacagaagttcctcaacgaaggtcgtgagggc
ggaggtactgcagctcaaacgagtttgaaggatttcaacaacgtcgtgcagactgttgtc
tcaggttccaagggttctaccgtcaacatctctcagatggttgcccttgtcggtcaacaa
gctgtggaaggacagcgtattccctatggcttcaaatacaggacactgccgcatttctca
aaggacgactactcgccagaatcccgtggtttcgtcgaaaactcctaccttcgcggtctc
accccttcggaattcttcttccacgccatggctggtcgtgaaggtttgattgatacagca
gtcaagacagccgagactggttacatccaacgtcgtctcgtcaaggcgctcgaagatgtt
atggtcaagtacgacggaaccgtgcgtaactccatgggtgacattgttgagttcatctat
ggtgaagatggtctggatggcgcccacattgagagtcaatctatggatatcatcatggca
tcggaggccgactttgaggctgggtacaagctcgacgtgcttggaaccgatcacccagag
atcccagttactaagcttgagggtgctaccatgttccagggtgatgtggaggttcagcga
gctctggacgaagagtttgagcagatcaagatcgatcgtgaatacctccgtgccactgca
agcgacgaggacctcgagtctttccagttgcctctcaacatccagcgcatgatccggtca
gctcaggcgcggttcggcatcaacccagagaaggccgttagcaaccttaatcctatcgag
accatcaggcaagtcaaggaaactctcgagcgactggttgtcattcgtggtaccgacgag
ctttcaagagaggctcaagacagtgcaacgtatctgttcaaatcccatcttcgcgcacgt
cttgcgttcaagaagcttgtcgttcagcaccgcctaagcaaggaggctctgaactacgtt
ctcggagaactcgaagaccgtttcctcaaggcagctgttgcccctggtgagatggtaggt
gttctggctgcgcagtccattggtgaacccgccacacagatgacgctcaacactttccat
tttgccggtgtgtcctctaagaacgtcacgctcggtgtacctcgattaaaggaaattttg
aacattgcagccaacatcaaaaccccatccatgttggttcgccagacagatacaaaggcc
acccaacaggacgccaagcgcctgcgaagcacaatcgagctcacgactctccgttcgttg
acgcaagcggttgaactctactacgaccctgacatccaatcaacgcttgttgaggaagat
caggacatggttgagtcatacttcattctgcctgaagaagacgaggtcatcgagtcacag
tccaagtggctgctccgtatcatccttgaccgcaagaagctgttggataagagtatcact
atcggcgaagttgctggcaagatcaaggaagagttcaaacctaatctggcggttatcttt
agtgacgagaatgccgatgagcaggtcatgcgtgttcgtttcatttgggatcagaacctc
cagaaggatgatgaggatgaagatgagcgtgacgagcgatggatgcgcaaacttgagaag
catctgcttgacgatgttacgctacgtggtgtacgtggtattgagcgtgctttcattcga
gaccacatcgtcacagttgaattgccagacaggtctttggtacactccaagagcaaggac
gaatgcaaagagtgggtgcttgataccactggtactgctttggccgaggtgctggccatt
gaaggtgtggatgcgaccaaaacctactccaactctttcattgagattcttggtgtgctt
ggaatcgaagctgcacgtgccggtctactcaaggagctgggtatggtcttgtcctttgac
ggttcttacgtcaaccatcgtcacatggcattgctcgtcgacatcatgtgccagcgtggt
cttctcatggccatcacccgtcatggtatcaaccgtaacgacactggtgccctcatgcgt
tgttctttcgaagagactgttgagattcttctcgaagcggccggctttggtgagctcgac
gactgccgtggtgtatctgagaacatcatgctcggtcagctggcgcctatgggtaccgga
gagtttgatgtcgtcatggacaatgccatgcttctcaccatggtggaggacaactccaag
atgatgggtggtgctgctggcgctggcaactacctcgacaacggtgctgccacgccgtac
gacctaggatctcccacatacgagggtggcatgggcgtgggctcatatgatcaggtctcg
ttctctcctatagctgcggctggtggaggtgatgatccaggcggcttcactgcctacgga
ggcagctacggaggtggtggcttcagcccgtacgatggaggtagaagtccaggaggctcg
ggttttactggcatgtcccccggtttcaccagcccggtgtctccgggtttctcgccaact
tcgcccggttactcgcccacctcaccaggaaccgccagccctcgcttcgccgcaacatca
cccggatacatggcttcgcctacgtccccgcactactctccaacctcgcctcgatacgga
tctcctacatcaccgtcgtactcacccacatctccggctggctactccccgacgtcgcct
cagtactctcctacgtcgcccaactacagcccaacgtccccgacgttcatgggtggcgcg
acttctccagcgtacagtccgacatcaccacaatacagcccgacgtcgccgcagtacagt
cctacaagtcctcagtaccaggccaccagcgacaggcgttctccgacttcaccgacgtca
ccgcaatacagcccgacgtcgccacgctactcgccaacgagtccggcagggtccttttct
ccgacctctccgcgctacagcccaacttctccgggcccagcctactctcctacatctcca
aagcaatag

  All links  
Ontology (4)   
   KEGG BRITE (4)   
Pathway (2)   
   KEGG PATHWAY (2)   
Chemical reaction (1)   
   KEGG ENZYME (1)   
Genome (1)   
   KEGG GENOME (1)   
Gene (5)   
   KEGG ORTHOLOGY (1)   
   NCBI-PROTEINID (1)   
   NCBI-Gene (1)   
   JGI (1)   
   OC (1)   
Protein sequence (2)   
   UniProt (1)   
   RefSeq(pep) (1)   
DNA sequence (1)   
   RefSeq(nuc) (1)   
Protein domain (8)   
   Pfam (8)   
All databases (24)   

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