KEGG   Aggregatibacter aphrophilus NJ8700: NT05HA_1813
Entry
NT05HA_1813       CDS       T00929                                 
Name
(GenBank) DNA-directed RNA polymerase, beta subunit
  KO
K03043  DNA-directed RNA polymerase subunit beta [EC:2.7.7.6]
Organism
aap  Aggregatibacter aphrophilus NJ8700
Pathway
aap03020  RNA polymerase
Brite
KEGG Orthology (KO) [BR:aap00001]
 09120 Genetic Information Processing
  09121 Transcription
   03020 RNA polymerase
    NT05HA_1813
 09180 Brite Hierarchies
  09182 Protein families: genetic information processing
   03021 Transcription machinery [BR:aap03021]
    NT05HA_1813
   03400 DNA repair and recombination proteins [BR:aap03400]
    NT05HA_1813
Enzymes [BR:aap01000]
 2. Transferases
  2.7  Transferring phosphorus-containing groups
   2.7.7  Nucleotidyltransferases
    2.7.7.6  DNA-directed RNA polymerase
     NT05HA_1813
Transcription machinery [BR:aap03021]
 Prokaryotic type
  Bacterial type
   RNA polymerase
    Core subunits
     NT05HA_1813
DNA repair and recombination proteins [BR:aap03400]
 Prokaryotic type
  SSBR (single strand breaks repair)
   NER (nucleotide excision repair)
    TCR (transcription coupled repair) factors
     DNA-directed RNA polymerase complex (RNAP)
      NT05HA_1813
SSDB
Motif
Pfam: RNA_pol_Rpb2_6 RNA_pol_Rpb2_1 RNA_pol_Rpb2_3 RNA_pol_Rpb2_2 RNA_pol_Rpb2_7 RNA_pol_Rpb2_45 SPG4
Other DBs
NCBI-ProteinID: ACS98140
Position
complement(1802338..1806366)
AA seq 1342 aa
MVYSYTEKKRIRKDFGKRPQVLNIPYLLTIQIDSFEKFIQRDPDGQQGLEAAFRSVFPIV
STNGNTELQYVSYQLGEPVFDVRECQIRGTTYAAPLRVKLRLVSYDKDAAPGTIKDIKEQ
EVYMGEIPLMTDNGTFVINGTERVIVSQLHRSPGVFFDSDKGKTHSSGKVLYNARIIPYR
GSWLDFEFDPKDNLYARIDRRRKLPATIILRALGYTTEQILDLFFDKISFEIKDNKLLMT
LVPERLRGETAAFDIEAKGKVYVERGRRITARHIKALEKDKVTQVEVPTEYIVGKVAAKD
YVDLATGELVCPANMELSLELLAKLAQAGYTQIETLFTNDLDYGPYISETLRVDPSNDRL
SALVEIYRMMRPGEPPTKEAAEALFDNLFFSSDRYDLSAVGRMKFNRSLGIEEATGNGTL
SNEDIVSVMKKLIDIRNGRGEVDDIDHLGNRRIRSVGEMAENQFRIGLVRVERAVKERLS
LGDLDAITPQDLINAKPISAAVKEFFGSSQLSQFMDQNNPLSEVTHKRRISALGPGGLTR
ERAGFEVRDVHATHYGRVCPIETPEGPNIGLINSLSVYARTNDYGFLETPYRKVVNGQVT
EEIEYLSAIEEGKYVIAQANSSLDEDFRFTDAFVTCRGEHGESGLYKPEEIHYMDVSTQQ
VVSVAAALIPFLEHDDANRALMGANMQRQAVPTLRADKPLVGTGIEKAVALDSGVAVVAK
RGGTIQYVDASRIVVKVNEDETVAGEAGIDIYNLIKYTRSNQNTCINQIPCVNLGDPIER
GEILADGPSTDLGELALGQNIRVAFMPWNGYNFEDSMLVSERVVQQDRFTTIHIQELSCV
ARDTKLGAEEITADIPNVGEAALSKLDESGIVYIGAEVKGGDILVGKVTPKGETQLTPEE
KLLRAIFGEKASDVKDSSLRVPNSVSGTVIDVQVFTRDGVEKDKRALEIEEMQLKQAKKD
LSEEFEILEAGLFMRIRNLLLSGGFDAKSLDKLDRTKWLEQTLDNEEKQHQLEQLAEQHE
ELRKEFERKLEVQRNKIIQGDDLAPGVLKVVKVYLAVKRQIQPGDKMAGRHGNKGVISKI
NPVEDMPYDENGQPVEIVLNPLGVPSRMNIGQILETHLGLAAKGIGDQINAMIKQQQSIA
KLREYMQKAYDLGGGSQKVDLSTFTDEEVMRLAQNLRKGLPIATPVFDGAHEKEIKGLLE
LGGLPTSGQITLYDGRTGEKFERPVTVGYMYMLKLNHLVDDKMHARSTGSYSLVTQQPLG
GKAQFGGQRFGEMEVWALEAYGAAYTLQEMLTVKSDDVNGRTKMYKNIVSGNQQMDPGTP
ESFNVIMKEIRSLGINIDLDEE
NT seq 4029 nt   +upstreamnt  +downstreamnt
atggtttactcctataccgagaaaaaacgaattcgtaaagacttcggcaaacgtccgcaa
gttttaaatattccttatttattaacaattcagattgattcttttgaaaaatttattcaa
agagatcctgatggtcaacaaggcttagaagccgctttccgctctgtattcccgattgtc
agtacaaacggaaatactgaattacaatatgtcagctatcaattaggcgagccggtgttt
gatgtacgtgaatgccaaattcgtggtaccacctatgcagcacctttacgagtaaaacta
cgcttagttagttacgacaaagatgccgcaccgggcaccatcaaagatattaaagaacaa
gaagtttatatgggtgaaatcccattgatgactgataacggtactttcgttattaatggt
accgagcgtgttatcgtgtctcaattacaccgcagtccgggtgtattctttgatagcgac
aaaggtaaaactcattcttcaggtaaagtgctgtataacgcacgtattattccttaccgc
ggttcatggttggattttgagtttgatccgaaagataatttatatgcacgtatcgaccgc
cgtcgtaaattaccggcaaccattattttacgtgcgctaggctatactaccgaacaaatc
ttagatcttttctttgataaaatttcctttgaaatcaaagataacaaattattaatgacc
ttagtaccggagcgtttgcgtggtgaaaccgccgcgtttgatattgaggctaaaggtaag
gtttatgttgagcgtggccgtcgtattactgcacgtcatattaaagccttggaaaaagac
aaagttacccaagttgaagtgccgactgaatatattgtaggcaaagttgctgcgaaagat
tatgtggatctagcaaccggagaattagtttgtccggcaaatatggagctttctcttgag
ttattggcaaaattagcacaagccggttatacacaaattgagactttatttaccaatgat
cttgattatggtccgtatatttccgaaaccttacgtgtagatccttctaatgaccgccta
agtgcgttagtggaaatctatcgcatgatgcgtccgggtgaaccaccgacaaaagaagcc
gcagaagcattatttgacaacctgttcttctcttccgatcgttatgatttgtctgctgta
ggtagaatgaaatttaaccgctctttaggtattgaagaggccaccggtaacggtacgtta
agtaatgaagatatcgtcagtgtgatgaagaaactgattgatattcgtaatggtcgcggt
gaagtggatgatattgaccacttaggtaaccgtcgtatccgttctgtgggtgaaatggca
gagaaccagttccgtattggcttggtacgtgttgaacgtgcggtgaaagagcgtttatct
ttaggtgatttagatgccatcacaccacaagatttaattaacgcaaaaccaatttctgct
gcggtgaaagaattctttggttcatctcagttatctcaattcatggaccaaaacaacccg
ttatcagaagtcacacacaaacgtcgtatttctgcattgggtccgggcggtttaacccgt
gaacgtgcaggttttgaggtgcgtgacgtacatgctacccactatggtcgcgtgtgtccg
attgaaacgcctgaagggccaaacatcggtttgattaactccctttccgtttatgcacgt
actaacgactacggcttcttagaaacaccgtatcgtaaagtggtaaatggccaggtgacc
gaagaaatcgaatatctttctgcgattgaagaaggtaaatacgttattgcacaggcgaac
tcaagtcttgatgaagatttccgctttaccgatgcgtttgttacctgtcgtggtgaacat
ggtgaatcaggtctttataaacctgaagaaattcactatatggacgtttctacccaacaa
gtggtttctgtggcggcagccttgattccattcttagagcacgacgatgcgaaccgtgct
ttgatgggggcaaacatgcaacgccaagcggttccaaccttgcgtgcagataaaccgtta
gtcggtaccggtattgaaaaagcagtagcgcttgactccggtgttgcggttgtcgcaaaa
cgcggtggtacgattcaatatgtggacgcttcccgtatcgtggtgaaagtcaatgaagac
gaaaccgttgcaggcgaagccggtattgatatttataacttaatcaaatacacccgttct
aaccaaaatacctgtatcaaccaaattccttgtgtgaatttaggtgacccgattgaacgt
ggtgaaatcttagctgacgggccatctaccgacttaggtgaattggcgcttggtcaaaat
attcgcgtagcgttcatgccatggaatggttataacttcgaagactccatgttagtttcc
gaacgtgtggtacaacaagatcgttttacaactattcacattcaagagctttcttgtgtg
gcgcgtgataccaaattaggtgcggaagaaattaccgcggatattcctaacgttggtgaa
gccgcattaagtaaattggacgaatccggtatcgtgtatatcggtgcggaagtgaaaggt
ggcgatattctggtgggtaaagtgacaccaaaaggtgaaacccaattaaccccggaagaa
aaattattacgcgcgatcttcggtgaaaaagcctctgatgtgaaagactcttctttacgt
gtaccaaacagcgtttccggtaccgttatcgatgtacaagtgtttacccgtgatggcgta
gaaaaagacaaacgtgcgttagaaattgaagaaatgcagttaaaacaagcgaaaaaagac
ttgagcgaagagtttgagatcttagaagccggcttgtttatgcgtatccgcaacctattg
ttatccggcggtttcgatgcgaaatccttagataaattagaccgcactaaatggttggaa
caaaccttagataacgaggaaaaacaacaccaattagagcagctagcggaacaacacgaa
gaattacgtaaagaatttgaacgtaaattggaagttcaacgcaacaagattatccaaggc
gacgatttggcaccgggcgtgttgaaagtcgttaaagtgtacttggcggtgaaacgtcaa
attcaaccgggcgataaaatggcaggtcgtcacggtaacaaaggggttatctcaaaaatt
aacccggtggaagacatgccatacgatgaaaacggtcaaccagttgaaatcgtattgaac
ccgttgggcgttccgtcccgtatgaatatcggtcaaatcttggaaactcacttaggtttg
gcggcgaaaggtatcggcgatcaaattaatgcgatgattaagcaacaacaatctatcgcg
aaattgcgtgaatacatgcaaaaagcctatgaccttggcggcggttcacaaaaagtggat
ctcagcacctttaccgacgaagaagtaatgcgtttagcgcaaaatctgcgtaaaggtttg
ccgattgcgacaccggtatttgacggtgcacatgaaaaagaaatcaaaggcttattagag
cttggtggtttaccgacttccggtcaaattaccctttatgatggtcgtacaggtgagaaa
ttcgagcgtccggtaacggtaggttacatgtatatgctcaaattgaaccacttggttgat
gacaaaatgcacgcgcgttcaactggctcttatagtcttgttactcagcaaccgttgggt
ggtaaggcgcaattcggtggtcaacgtttcggtgagatggaggtgtgggcacttgaagct
tatggtgcggcttataccttacaagaaatgttaaccgtgaaatccgatgacgtgaacggt
cgtacgaagatgtataaaaacatcgtcagcggcaaccaacaaatggatccgggcacaccg
gaatctttcaacgtaattatgaaagaaatccgttcacttggtatcaacatcgacttggac
gaagaataa

  All links  
Ontology (4)   
   KEGG BRITE (4)   
Pathway (1)   
   KEGG PATHWAY (1)   
Chemical reaction (1)   
   KEGG ENZYME (1)   
Genome (1)   
   KEGG GENOME (1)   
Gene (8)   
   KEGG ORTHOLOGY (1)   
   RefGene (5)   
   NCBI-PROTEINID (1)   
   OC (1)   
Protein domain (7)   
   Pfam (7)   
All databases (22)   

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