KEGG T00352: Acid345

Candidatus Koribacter versatilis: Acid345_0779

Entry

Acid345_0779 CDS T00352

Definition

ATP dependent DNA ligase

Orthology

K01971

DNA ligase (ATP) [EC:6.5.1.1]

Organism

aba Candidatus Koribacter versatilis

Pathway

aba03410	Base excision repair
aba03420	Nucleotide excision repair
aba03430	Mismatch repair
aba03450	Non-homologous end-joining

Class

Genetic Information Processing; Replication and repair; Base excision repair [PATH:aba03410]
Genetic Information Processing; Replication and repair; Nucleotide excision repair [PATH:aba03420]
Genetic Information Processing; Replication and repair; Mismatch repair [PATH:aba03430]
Genetic Information Processing; Replication and repair; Non-homologous end-joining [PATH:aba03450]

SSDB

Motif

Pfam:

LigD_N DNA_ligase_A_M DNA_ligase_A_C

Other DBs

NCBI-GI:

NCBI-GeneID:

JGI:

UniProt:

Position

complement(961481..963307)

AA seq 608 aa
MALEEYKKKRRFTDTPEPPPSIDKSKGHRFVVQKHHASRLHYDFRLEMDGVLKSWAVPKG
PSLDPADKRLAMAVEDHPVSYLKFEGIIPENNYGAGTVMVWDIGTWEPVGDADAMLAKGD
LKFRLKGKKLNGEFALVHIKSRRSGTKGNEWLLIKHRDDAVVPGYDIDEYDFSALTKRSL
DDIAGDQKSAEWQSNRAGSSNIPQKSAWLADAIKKADKKAAAKKTAVKTKAPAKKSAKTA
AKKAVKTTATKKQKDAHPAFADLKGARHAAMPSQIQPMLATLVDEPFEDSQWLYEIKWDG
YRAVTFLNDGKLRFVSRNGNDLTNAYPELHDIGGSISAQRAILDGEIVALDGEGRSSFSL
MQQRTGIGEGGRRTGKGNANIPVQYYAFDLLYLDGYDLTHVSLEDRKRVLSEIISPSDVL
RVSDSFDEGLPLYEAARARGLEGIIAKRRESCYLTKRSREWLKIKITQRQECVIGGYTEP
KGSRENFGSVVLGLYDDKGRLIPVGQAGSGFTAQSNAALWKKLQKLETKTSPFFGKPDSP
RQVHYVRPELVAEIKFTEWTHQGQSGQVRMRAPVFEGLRTDKSPSECVFDFAKPTKLEVK
KAESGDAA

NT seq 1827 nt +upstreamnt +downstreamnt
atggcactcgaggaatacaaaaagaaacgtcgctttactgacacccccgagcctccaccc
tcgatcgacaaaagcaaaggtcatcgcttcgtggtgcagaagcaccacgcctcacgtctc
cactacgacttccgccttgagatggacggcgtgctgaagtcctgggccgtgcccaaaggc
ccatcgctcgatcccgccgacaagcgcctcgccatggctgtcgaagatcatcccgtctcg
tatctcaaattcgaaggcatcatccccgagaacaactacggcgcaggcaccgtgatggtc
tgggacatcggcacctgggagccggttggcgacgccgacgccatgctcgccaagggcgat
ctcaaattccggttgaagggcaaaaagctcaacggcgaattcgctctggtgcacatcaag
tcgcgccgctccggcaccaagggtaacgagtggctgctgatcaagcaccgcgatgacgcc
gtcgtccctggctacgacatcgacgagtacgacttctccgccctcaccaagcgctcgctc
gacgacatcgccggcgaccagaaatcggccgagtggcaaagcaatcgcgccggatcctcc
aacatcccgcagaaaagcgcgtggctcgcggacgccatcaagaaggccgacaagaaagct
gccgcaaaaaagaccgctgtaaaaacaaaggctccagcaaaaaagtccgccaaaaccgca
gccaagaaagctgtgaagaccaccgcaaccaagaaacagaaagacgcgcacccggcgttc
gccgatctcaaaggcgcgcgtcacgccgcgatgccgtcgcaaatccagcccatgctcgcc
acgctcgtagatgagccctttgaagactcccagtggctctacgagatcaagtgggacggc
tatcgcgccgtcaccttcctcaacgatggcaaacttcgcttcgtctcgcgcaacggcaac
gacctaactaacgcctatcctgaactgcacgacatcggcggaagcatctccgcgcaacgc
gccattctcgacggcgaaatcgtcgccctcgacggcgaaggccgctcctccttcagcctg
atgcaacaacgcactggcatcggcgagggcggacgccgcaccggcaagggcaacgccaac
attcccgtgcagtattacgccttcgacctgctctaccttgacggctacgacctcacgcac
gtctcgctcgaggaccgcaaacgggtgctcagcgaaatcatctcgcccagcgacgtactg
cgtgtctctgactccttcgacgagggcctgcctctctacgaagccgcccgcgcgcgcggg
ctcgaaggcatcatcgccaagcgtcgcgagagttgctatctcaccaagcgcagccgcgag
tggctgaagatcaagatcacgcagcgccaggagtgcgtgattggcggctataccgagccc
aagggcagtcgcgaaaatttcggctccgtcgtcctcggcctctacgacgacaaaggccgc
ctcatccccgttggccaggccggcagcggtttcaccgcccagtcaaacgctgccctgtgg
aagaaactccagaagctcgaaaccaaaacttcaccgttcttcggcaagcccgacagcccg
cgccaggtccactatgtccgccctgaactcgttgccgaaatcaagttcaccgagtggacg
caccaaggccaaagcggccaggtcagaatgcgcgcccctgttttcgaagggctgcgcact
gacaaatcgccgagcgaatgcgtcttcgatttcgcgaagccaacaaaattagaagtgaaa
aaagccgaaagcggcgacgccgcgtag

All links

Pathway (4)   
   KEGG PATHWAY (4)   
Chemical reaction (1)   
   KEGG ENZYME (1)   
Genome (1)   
   KEGG GENOME (1)   
Gene (5)   
   KEGG ORTHOLOGY (1)   
   NCBI-Gene (1)   
   NCBI-GI (1)   
   JGI-ABA (1)   
   OC (1)   
Protein sequence (2)   
   UniProt (1)   
   RefSeq(pep) (1)   
Protein domain (3)   
   Pfam (3)   
All databases (16)   

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