KEGG   Luteitalea pratensis: LuPra_03699
Entry
LuPra_03699       CDS       T04394                                 
Symbol
rho_1
Name
(GenBank) Transcription termination factor Rho
  KO
K03628  transcription termination factor Rho
Organism
abac  Luteitalea pratensis
Pathway
abac03018  RNA degradation
Brite
KEGG Orthology (KO) [BR:abac00001]
 09120 Genetic Information Processing
  09123 Folding, sorting and degradation
   03018 RNA degradation
    LuPra_03699 (rho_1)
 09180 Brite Hierarchies
  09182 Protein families: genetic information processing
   03021 Transcription machinery [BR:abac03021]
    LuPra_03699 (rho_1)
   03019 Messenger RNA biogenesis [BR:abac03019]
    LuPra_03699 (rho_1)
Transcription machinery [BR:abac03021]
 Prokaryotic type
  Bacterial type
   Other transcription-related factors
    Transcription termination factor
     LuPra_03699 (rho_1)
Messenger RNA biogenesis [BR:abac03019]
 Prokaryotic type
  Bacterial mRNA degradation factors
   RNA degradosome components
    Other RNA degradosome components
     LuPra_03699 (rho_1)
SSDB
Motif
Pfam: Rho_RNA_bind ATP-synt_ab Rho_N AAA_22 OB_RNB NACHT AAA_25 ATPase_2 AAA Spore_III_AA GpA_ATPase
Other DBs
NCBI-ProteinID: AMY10466
UniProt: A0A143PQ19
Position
complement(4472066..4473451)
AA seq 461 aa
MAPAQKRSGGRRGPRPSGPRRPVNDIPDVANDPPLDLPPEGSEASLRIGQLKEMTIQSLM
QVAQDLGVIGATGLRKQELIFQILKAQTEQSGFIFSEGVLEVLPDGFGFLRAPDYNYLAG
PDDIYVSPSQIRKFDLQTGDTVSGQIRPPKDGERYFALIKVEAVNFEAPEFARNKIFFEN
LTPLYPQARFSLETAKDNLSARVLDLMTPIGKGQRGLIVAPPRTGKTMLLQNIAQSVVQN
HPEVYLIVLLIDERPEEVTDMQRSVRGEVISSTFDEPAQRHVQVAEMVIEKAKRLVEHKK
DVLILLDSITRLARAYNSVVPPSGKVLSGGVDSNALQKPKRFFGAARNIEEGGSLTIIAT
ALVDTGSRMDEVIFEEFKGTGNMEIHLDRKLVDKRVFPAIDIQKSGTRKEELLIPKDDLN
RIWVLRKVINPLSPTEAMELLIDKLAKAGSNADFLNAMHKP
NT seq 1386 nt   +upstreamnt  +downstreamnt
atggctccagcacagaagcgctccggcggtcgccgcggaccgcgaccctccggtccccgc
cgccccgtcaacgacatccccgacgtcgccaacgatccaccgctcgatctgccgcccgag
ggcagcgaggccagcttgcggatcggtcagctcaaggagatgaccatccagtcgttgatg
caggtcgcccaggatctcggggtgatcggcgccaccggcttgcgcaagcaggaactgatc
ttccagatcctcaaggcacagaccgagcagagtggcttcatcttctccgagggcgtcctc
gaagtcctgccagacggcttcgggttcctgcgcgcgcccgattacaactacctcgcgggc
cccgacgacatctatgtctcgccctcgcagatccgcaagttcgacttgcagaccggcgat
acggtcagcggccagatcaggccgccgaaggacggcgagcgctacttcgccctgatcaag
gtcgaggccgtcaacttcgaggcgcccgagttcgcgcgcaacaagatcttcttcgagaac
ctgacgcccctgtacccgcaggcgcgcttctcgctcgagaccgccaaggacaacctgtcg
gcccgcgtcctcgacttgatgacgccgatcggcaagggccagcgcgggctgatcgtcgcg
ccgcctcgtaccggcaagacgatgttgctgcagaacatcgcacagtcggtggtgcagaac
caccccgaggtgtacctgatcgtcctgctcatcgacgagcgtccggaagaggtcaccgac
atgcagcgctcggtgcgtggcgaggtgatctcgtcgacgttcgacgagccggcgcagcgc
cacgtacaggtcgcagagatggtgatcgagaaggccaagcgcctcgtcgagcacaagaag
gatgtcctcatcctgctcgactcgatcacccgcctcgcccgcgcctacaacagcgtcgtg
ccgccgtcgggcaaggtgctctcgggtggcgtcgattcgaacgcgctgcagaagccgaag
cgcttcttcggggcggcgcgcaacatcgaggaaggtgggtcgctgacgatcatcgcgacg
gcgctcgtcgataccggctcgcgcatggatgaggtcattttcgaggagttcaagggcacc
ggcaacatggagatccacctggaccgcaagctggtggacaagcgcgtgttcccggccatc
gacatccagaagagcggcacccgcaaggaggaactcctcatcccgaaggacgacctcaac
cgcatctgggtgttgcgcaaggtgatcaacccgttgtcgcccaccgaggcgatggaactg
ctgatcgacaagctcgccaaggccggcagcaacgccgacttcctcaacgcgatgcacaag
ccgtag

  All links  
Ontology (3)   
   KEGG BRITE (3)   
Pathway (1)   
   KEGG PATHWAY (1)   
Genome (1)   
   KEGG GENOME (1)   
Gene (58)   
   KEGG ORTHOLOGY (1)   
   RefGene (55)   
   NCBI-PROTEINID (1)   
   OC (1)   
Protein sequence (1)   
   UniProt (1)   
Protein domain (11)   
   Pfam (11)   
All databases (75)   

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