KEGG T00667: ABAYE2029

Acinetobacter baumannii AYE: ABAYE2029

Entry

ABAYE2029         CDS       T00667

Symbol

mfd

Name

(GenBank) transcription-repair coupling protein

K03723

transcription-repair coupling factor (superfamily II helicase) [EC:5.6.2.4]

Organism

aby Acinetobacter baumannii AYE

Pathway

aby03420

Nucleotide excision repair

Brite

KEGG Orthology (KO) [BR:aby00001]
09120 Genetic Information Processing
  09124 Replication and repair
   03420 Nucleotide excision repair
    ABAYE2029 (mfd)
09180 Brite Hierarchies
  09182 Protein families: genetic information processing
   03400 DNA repair and recombination proteins [BR:aby03400]
    ABAYE2029 (mfd)
Enzymes [BR:aby01000]
5. Isomerases
  5.6  Isomerases altering macromolecular conformation
   5.6.2  Enzymes altering nucleic acid conformation
    5.6.2.4  DNA 3'-5' helicase
     ABAYE2029 (mfd)
DNA repair and recombination proteins [BR:aby03400]
Prokaryotic type
  SSBR (single strand breaks repair)
   NER (nucleotide excision repair)
    TCR (transcription coupled repair) factors
     TRCF (transcription-repair coupling factor)
      ABAYE2029 (mfd)

SSDB

Motif

Pfam:

TRCF UvrB_inter DEAD Helicase_C CarD_TRCF_RID MFD_D3 ResIII SNF2-rel_dom ERCC3_RAD25_C Glyco_tran_WecG RecG_dom3_C

Other DBs

NCBI-ProteinID:

CAM86906

Position

complement(2083670..2087131)

AA seq 1153 aa
MFQQEISQLNLQQLKAGEKRWVGSLLGSSAALLLKEIATQHSSLLVLVARNNQHVAQLES
ELEFYGVKPTIFPDWEILPYDRLSPHQDIVSERLAILSNIPKQGVLLISASTLAQRVAPY
SWVLGEHFDIKVGQKFDLEQQKLRLVQAGYHLVDTVYDHGEFAVRGSIMDIFASGQESPI
RIDLFDDEIDSLKFFDPETQRTTTTLKSFTVLPAKEFPLKEGRSVFRDRYSEFFPTANPK
KNPIYQDVLDGIASPGIEFYLPLFFDKEQMQTQSMFTTYLPKNCIVITTNDIDTDLTNFW
KEVMRRYEDRRHNMDQPILAPEELFISPNHLLSALNQFPRMLVSAETIEEKAGALNLKTE
QPPKLPVDPKKEKPFSAVKKYIDEANHPVLLVAESAGRRESLKDALRSSLGEIPNVENFE
QFQISQFAIAITNAPLDRGLLLTDQLTVISENQLYEHRVVQRRRKRQQEVSEEFLIRSLT
ELSIGAPVVHIDHGVGRYAGLITLAIEGQDYEFLQLDYAEDAKVYVPVTNLHLISRYSGG
DPDLAPLHKIGTDAWSKAKRKALEQIHDVAAELLHIQARRQSKPGFAFELDQSLYMQFAS
GFAYEETLDQANAIEATLYDMQQAKPMDRLVCGDVGFGKTEVAMRAAFVAVQNGKQVAVL
VPTTLLAQQHYESFKDRFADWPVRIEVLSRFGSNKTHLKNIEDLANGKVDIVVGTHKLLQ
ENVQFKDLGLMVVDEEHRFGVRDKERIKALRADVDMLTLTATPIPRTLNMAFSGMRDLSI
IATPPARRLAVKTFVQENTDASIKEAILRELLRGGQVYFLHNEVETIERAAENIRVLVPE
ARVAVAHGQMRERELEQVMQQFYHKEYNVLVCSTIIETGIDVPNANTILIERADKLGLAQ
LHQLRGRVGRSHHQAYAYLLVPSIKHLKGDAEKRLDAIQRASTLGAGFMLATEDLEIRGA
GELLGEQQSGSMQAIGYSLYMEMLEKATKAIQQGKTPNFDAPLSLTAEINLHIPALIPDD
YLGDVHQRLLFYKRISNTDTQEKLDNIRMELIDRFGIPPQSVKHLFSVHQIRLKAEHLGI
TKIDINTQGGNIEFSPDTPVQAISIIQLMQKNPTYYRMEGGQRLKVMVQLEEYEKRIQFI
NDLLQKLMSELHA

NT seq 3462 nt +upstreamnt +downstreamnt
atgtttcaacaagaaatctctcaattgaatttgcaacagctcaaggccggtgaaaagcgt
tgggtggggtcattattaggttcatcagcagctttattgcttaaagaaattgccactcag
cattcttctttattggtattagttgctagaaacaaccaacatgttgctcaattagaaagt
gaacttgagttttatggagttaagccgacaatttttccggattgggaaattttgccttat
gaccgtttatctccccatcaagatattgtgtcagaacgtcttgctattttatctaatata
cctaaacaaggcgtattactgatttcagcaagtaccttggctcaacgggttgcgccttac
tcatgggtattaggagaacactttgatataaaagtgggtcaaaaatttgatttagaacaa
caaaaattaaggttagttcaggcgggctaccacttagtagatacagtttatgaccatggt
gagtttgctgtacgcggtagtattatggatatttttgcatctgggcaagaatctccgatc
cgcatagatttatttgacgatgaaattgattctttaaaattctttgaccctgaaactcaa
agaacaacaaccacgctaaaaagttttacggttttacccgcgaaagaattccctttaaaa
gaaggacgttcagtttttagagaccgttattctgagttttttcctactgccaatcctaag
aaaaatccaatttatcaggacgttttagatggtatagcatcgcctggtattgaattttat
ttaccgctattttttgataaagaacaaatgcagacacaaagtatgtttacaacatactta
ccaaagaattgcattgtaattacaactaatgatattgacactgatttaacgaacttctgg
aaagaagttatgcgtcgttatgaagaccggcgccataatatggatcaacctattcttgct
ccagaagaactatttatttctccaaatcatttgttaagtgctttaaaccagtttccacga
atgcttgtaagcgcagaaactattgaagaaaaagctggtgcacttaatcttaaaactgaa
caaccacccaagttgccagtcgatccgaaaaaagaaaaaccatttagtgccgtaaaaaaa
tatattgatgaagcaaatcatcctgttctattggttgcggaaagtgcaggacgtcgtgaa
agcttaaaagatgcgttgcgttcaagtttaggtgagattccgaatgtagagaattttgag
caattccaaattagtcagttcgcaattgctattactaatgcacctttagatcgtggttta
cttttaactgatcaattaacggttatttcagaaaatcagctttacgagcaccgagttgta
cagcgtcgtcgcaagcgtcaacaggaagtttccgaagagtttctgattcgaagcttaact
gagctcagcattggtgctcctgttgtacatatcgatcatggtgtggggcgttatgctggc
ttaattacactcgcgattgaaggacaagactatgagttcttacaactagattatgccgaa
gatgcaaaagtctatgttccagtaacgaacttgcatctaattagccgttatagtggtggc
gacccggatttagcaccgttacataaaatcggaactgatgcttggagtaaagctaagcgt
aaagcattagagcaaattcatgacgttgcagccgagcttttacatattcaggcacgtcgt
cagtcaaaacctggcttcgcttttgaactggatcagtcgctctatatgcaatttgcaagc
ggttttgcgtatgaagaaacccttgatcaggctaatgcaattgaagccacactctatgat
atgcagcaagcaaaaccaatggataggttggtgtgtggtgacgtaggttttggtaaaacc
gaagtggccatgcgtgcagcatttgtagcggtacaaaatggcaaacaggtcgctgtttta
gttcctacgactttactagctcaacaacattatgagtcttttaaagaccgttttgctgat
tggccagtacgtattgaagtgctctcacgttttggttcaaacaaaacacatttgaaaaat
attgaagacttggcaaatggtaaagtcgatattgtggtaggtacacataagcttctacaa
gagaatgttcagtttaaagatttaggcttaatggttgtagacgaggagcatcgctttggt
gtgcgtgataaggagcgtatcaaagctttacgtgccgatgttgatatgttgacacttaca
gcaacgccaattcctcgtacgcttaatatggctttttcggggatgcgtgatttgtcgatt
attgcgactccgccagcccgtcgattagcagtaaaaacctttgtgcaagagaatacagat
gcttcaatcaaggaagcgattttgcgtgagttacttcgtggtggacaagtttatttctta
cataatgaagtagagaccattgagcgagctgccgaaaatattcgtgtgcttgtacccgaa
gcacgtgtagcggtagcacatggacaaatgcgtgaacgcgaacttgagcaagttatgcag
cagttctatcacaaagaatataatgtgctggtgtgctcaaccattattgagacaggtatc
gatgttccaaatgccaatacaattttgattgaacgtgcggataaacttggtttagcgcaa
ttacaccagttacgtggccgtgtaggtcgttcgcatcaccaagcatacgcgtatttatta
gtaccttcgattaaacacttaaaaggtgatgccgaaaaacgccttgatgcgattcaacgt
gcttcgacattaggtgcaggctttatgctcgctacggaagatttggaaattcgtggagca
ggcgaattgttaggcgagcaacaaagtggctcaatgcaggcgataggatatagcttgtat
atggaaatgcttgagaaagcgactaaagcaattcaacagggtaaaaccccgaattttgat
gctccattgtcgttaactgccgaaattaacttacatattcctgcacttattccagatgat
tatctgggtgatgttcatcaacgtctattattctataaacgtattagtaataccgataca
caggaaaaactagataacatccgtatggagcttattgaccgtttcggtattccaccgcag
tcggttaagcacttatttagcgtgcatcaaatccgtttgaaagcagaacatttaggtatt
acgaaaattgatattaatactcaaggtggaaatattgagttttcaccagatacgccagtt
caggccattagtattattcagttaatgcaaaaaaatccgacttattaccgtatggaaggc
ggacaacgtttgaaggtgatggtgcagcttgaagagtatgaaaaacgaattcaatttatc
aatgatttattgcaaaaattgatgagtgaactacatgcctga

All links

Ontology (3)   
   KEGG BRITE (3)   
Pathway (1)   
   KEGG PATHWAY (1)   
Chemical reaction (1)   
   KEGG ENZYME (1)   
Genome (1)   
   KEGG GENOME (1)   
Gene (3)   
   KEGG ORTHOLOGY (1)   
   NCBI-PROTEINID (1)   
   OC (1)   
Protein domain (11)   
   Pfam (11)   
All databases (20)   

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