KEGG   Acinetobacter pittii: BDGL_003310
Entry
BDGL_003310       CDS       T01684                                 
Symbol
rne
Name
(RefSeq) ribonuclease E (RNase E): endoribonuclease for rRNA processing and mRNA degradation
  KO
K08300  ribonuclease E [EC:3.1.26.12]
Organism
acc  Acinetobacter pittii
Pathway
acc03018  RNA degradation
Brite
KEGG Orthology (KO) [BR:acc00001]
 09120 Genetic Information Processing
  09123 Folding, sorting and degradation
   03018 RNA degradation
    BDGL_003310 (rne)
 09180 Brite Hierarchies
  09182 Protein families: genetic information processing
   03019 Messenger RNA biogenesis [BR:acc03019]
    BDGL_003310 (rne)
   03009 Ribosome biogenesis [BR:acc03009]
    BDGL_003310 (rne)
Enzymes [BR:acc01000]
 3. Hydrolases
  3.1  Acting on ester bonds
   3.1.26  Endoribonucleases producing 5'-phosphomonoesters
    3.1.26.12  ribonuclease E
     BDGL_003310 (rne)
Messenger RNA biogenesis [BR:acc03019]
 Prokaryotic type
  Bacterial mRNA degradation factors
   RNA degradosome components
    Ribonucreases
     BDGL_003310 (rne)
Ribosome biogenesis [BR:acc03009]
 Prokaryotic type
  rRNA processing factors
   BDGL_003310 (rne)
SSDB
Motif
Pfam: RNase_E_G RNase_E_G_Thio S1 RBM39linker
Other DBs
NCBI-GeneID: 11637976
NCBI-ProteinID: YP_004997578
UniProt: F0KLY4
Position
complement(3555292..3558615)
AA seq 1107 aa
MKRMLINATHAEEVRVALITGNRLYDFDLENRTREQKKSNIYKGHVTRVEPSLEAVFVEY
GAGRQGFLSMREIANSYFQADPRQTSNIRELITEGTELLVQVEKEERGNKGAALSTFISL
AGRYLVLMPNNPKGGGISRQISGSVREELKEILASLNLPRGMSVIVRTAGIGRTQEELQL
DLQHLLDLWAQIQGTASSGPSPMLVHQEAGVVTRAIRDYLRDDVAEILIDSEQAYNEAYN
FVKAVMPRQLDKLKTYTLNEPLFAHFGIESQIQTAYEREVKLPSGGSIVIDQTEALVSID
INSAKSTRGHDVEETALNTNLEAAEEIARQLRLRDIGGLVVIDFIDMTKERNQRMVEAKL
REATQSDRARIQFGQLSRFGLMEMSRQRLRPSLEEATGYVCPRCHGTGMVRDLRSLSLSI
MRKVEEIALRERHGEVQVEVPVEIAAFLLNEKRHSLVYLEQTSSVRVTVLPHPHLETPHY
EIQYNPDGFAPSSYERTEATRSSEKELGYESSEWHLEEADHGHTHAAPVANNAANQKKAN
QAAQPAAQASAQKAASPCAWLENLFVQKQAQTVDQSRSAQNAAAAIEQMVNTGAVSRGQF
GQVVAPAVAEVTSAPSNNAYISQSPVKQEARENVEKDDKVQQQRPNNKKRKHKEQREQHQ
HHHNQEPQQQQVHEEVVQLSRQEQRELKRQQKRQQQDQPHAQHQNDGQQAEHAVPRRDRN
NQQRPNRPNRHRDPSVLNENQNTPAPAVVDEKQIKVDLIDAPQHEVMNTALVINVDQAQS
EIIALTPEQPVERTEKAPVVEATQEPAPAPVVAVEETVTAEAEAPQPKAEKTQPQVQRAS
NDPRMRRREQRNAKRAKAAAPSIAPSQIPTLAQYTIGSLIRHVYGEDCTVLIEQFGLVPT
FNRALQKFAEQYASTLVTEVASEAEDKKPVTRDAELPSNKPSQEAEPAPVLPLTPPKEAT
PRVANDPRERRRLAKLAAEQAFEQVKQQHSAPEEAAPVAETVEEAVVAPTAETQAPVESK
QQPLELDQETEVAANIEETPAEPAIEAPVAKQPKAAAKAKAATEQAVEPTEAPAESESED
SKADKDKPSRPRRPRGRPPKKANPVAE
NT seq 3324 nt   +upstreamnt  +downstreamnt
atgaaacgtatgttgattaatgcaactcacgcagaagaagtccgcgttgcacttatcact
ggtaatcgtctttacgattttgatttagagaatcgtacccgagaacagaaaaaatccaat
atctataaaggccatgtaacccgcgtagaaccatctttagaagctgtttttgttgaatac
ggcgcaggccgtcaaggcttcttgtctatgcgcgaaattgctaacagttatttccaagca
gacccacgacaaacttcaaacattcgtgaacttatcactgaaggtactgaattacttgtt
caagtcgaaaaagaagaacgtggcaataaaggtgcagctctttctacctttatttcactt
gcaggacgttatttggttcttatgccaaacaacccgaaaggtggcggtattagtcgtcaa
atttcaggttctgtacgtgaagaattaaaagaaattttagcttctttaaatttaccacgt
ggtatgagcgttattgtacgtaccgctggtattggccgtacccaagaagaattacagtta
gacttacagcatttgcttgacctttgggcacaaatccaaggcacagcgagctctggccct
tctccaatgctagttcatcaagaagctggtgttgttactcgtgctatccgcgattattta
cgtgatgatgttgcagaaattttaattgatagcgaacaggcttataacgaagcttataac
tttgttaaagcagtgatgcctcgtcaattagacaaacttaaaacttatactttaaacgag
ccattgtttgctcattttggtattgaaagtcaaattcaaactgcttatgaacgtgaagta
aaacttccttctggcggttcaattgtgattgaccagactgaagctttagtttcaatcgat
attaactctgcgaaatcgactcgtggacatgacgttgaagaaactgcgctgaatactaac
ttagaagcagcagaagaaattgctcgccaacttcgtcttcgtgacattggtggtttagtt
gtaatcgatttcatcgatatgactaaagagcgcaaccaacgtatggttgaagcaaaactt
cgtgaagcaacacaaagcgatcgcgcacgtattcagtttggacaactttctcgttttggc
ttaatggaaatgagccgtcaacgcttacgtccatctcttgaagaagcaacaggttatgtg
tgccctcgctgtcatggtacaggcatggttcgtgacttacgctcactttcgctttctatt
atgcgtaaagtagaagagatcgcgcttcgtgaacgtcatggtgaagtacaggtagaagta
cctgttgaaattgcagcattcttactcaatgaaaaacgtcatagtcttgtttatttagaa
caaacttctagtgttcgtgtgactgttttgcctcacccgcacttagaaacccctcactac
gaaattcagtacaatccagatggatttgcaccatctagctacgaacgtactgaagcaact
cgttcaagtgaaaaagagttaggttatgaatcttctgaatggcatttagaagaagccgat
catggccatactcatgctgctcctgttgccaataacgcagccaaccaaaagaaagcaaat
caagcagctcaacctgctgctcaggcaagcgctcaaaaagcagcaagcccttgtgcatgg
ttagaaaacctttttgtgcaaaagcaagctcaaacagttgatcaatctcgctcagcacaa
aatgctgctgccgcaattgaacaaatggtgaatactggcgctgttagccgtgggcagttt
ggacaagttgtagcaccagcagttgcagaagttacttcggctccatctaacaatgcttat
atttctcaatctcctgttaagcaggaagcacgtgagaatgttgaaaaagacgataaagta
caacagcagcgtccaaacaacaaaaaacgtaagcacaaagagcaacgtgaacaacatcaa
catcaccacaatcaagaaccacagcaacaacaggttcatgaagaagttgtacagttatca
cgccaagagcaacgtgaattaaaacgtcaacaaaagcgtcaacaacaagatcagccgcat
gcgcaacatcaaaatgatgggcaacaagctgaacatgctgtaccgcgtcgtgaccgtaat
aatcaacaacgtccaaaccgcccgaatcgccaccgcgatccaagcgtattaaatgaaaat
caaaatacgccagcaccagcagttgttgatgaaaaacaaattaaggttgatttgattgat
gctccacagcatgaagtcatgaatacagccttagtcatcaatgttgatcaagcacaaagc
gaaattattgctttaacgcctgagcaacctgttgaacgcactgaaaaagcacctgttgtt
gaagctactcaagaaccagctccagcaccagttgtggcagtggaagagacggtaactgct
gaagcagaagctcctcaaccaaaggctgagaaaactcaaccgcaagttcaacgtgcaagt
aatgatcctcgtatgcgtcgccgtgaacaacgcaatgcaaaacgtgctaaagctgctgca
ccatcaattgccccatcgcaaattccaacgttggcgcaatatacaattggtagcttgatc
cgtcatgtttacggtgaagactgcacagtactgattgaacagtttggtttagttccaaca
ttcaatcgtgcattgcagaaatttgcagagcaatatgcaagtactctagtgactgaagtc
gcatctgaagctgaagacaaaaagcctgttactcgtgatgccgagcttccaagcaataag
ccttcacaagaagcagaacctgcgccagtacttccgttgacgccaccaaaagaagcgaca
ccacgtgttgctaatgatccgcgtgaacgccgtcgtttagcgaaacttgcagctgaacaa
gcttttgagcaagttaaacaacaacattctgcaccagaagaagctgcccctgtagctgag
actgtggaagaagccgttgttgctcctactgctgaaacacaagcacctgttgaatcaaag
caacaaccgcttgagcttgatcaggaaactgaagtagcagctaatatagaagagacacca
gctgaacctgcaatagaagctccggttgcaaaacagccaaaagcagctgcaaaagccaaa
gcagctacagaacaagctgtagagccaactgaagctcctgccgagagtgaatcggaagat
tctaaagctgataaggacaaaccaagtcgtcctcgtcgccctcgcggccgtccaccaaag
aaagcaaatcctgtagctgagtaa

  All links  
Ontology (4)   
   KEGG BRITE (4)   
Pathway (1)   
   KEGG PATHWAY (1)   
Chemical reaction (1)   
   KEGG ENZYME (1)   
Genome (1)   
   KEGG GENOME (1)   
Gene (4)   
   KEGG ORTHOLOGY (1)   
   NCBI-PROTEINID (1)   
   NCBI-Gene (1)   
   OC (1)   
Protein sequence (2)   
   UniProt (1)   
   RefSeq(pep) (1)   
Protein domain (4)   
   Pfam (4)   
All databases (17)   

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