KEGG   Atta cephalotes (leaf cutting ant): 105623347
Entry
105623347         CDS       T04923                                 
Name
(RefSeq) tRNA-splicing ligase RtcB homolog
  KO
K14415  tRNA-splicing ligase RtcB (3'-phosphate/5'-hydroxy nucleic acid ligase) [EC:6.5.1.8]
Organism
acep  Atta cephalotes (leaf cutting ant)
Brite
KEGG Orthology (KO) [BR:acep00001]
 09180 Brite Hierarchies
  09182 Protein families: genetic information processing
   03016 Transfer RNA biogenesis [BR:acep03016]
    105623347
Enzymes [BR:acep01000]
 6. Ligases
  6.5  Forming phosphoric-ester bonds
   6.5.1  Ligases that form phosphoric-ester bonds (only sub-subclass identified to date)
    6.5.1.8  3'-phosphate/5'-hydroxy nucleic acid ligase
     105623347
Transfer RNA biogenesis [BR:acep03016]
 Eukaryotic type
  tRNA spricing factors
   tRNA splicing ligase complex
    105623347
 Prokaryotic type
   tRNA splicing ligases
    105623347
SSDB
Motif
Pfam: RtcB
Other DBs
NCBI-GeneID: 105623347
NCBI-ProteinID: XP_012060133
UniProt: A0A158NRH5
Position
Unknown
AA seq 506 aa
MVVRQYQEELKYLEKINECCWRIKKGFQPNMKVEGVFYVNNTLERLMFDELRNACRPGAV
GGFLPGMKQIANVAALPGIVWRSVGLPDVHSGYGFAIGNMAAFDMDDPKSIVSPGGVGFD
INCGVRLLRTNLFERDVLPIKEQLAQSMFDHIPVGVGSKGIIPMNARDLEEALEMGMDWS
LREGYIWAEDKEHCEEYGRMLNADPSKVSMRAKKRGLPQLGTLGAGNHYAEIQVVDEIYD
KWAAYKMGIEEKGQICVMIHSGSRGFGHQVATDALVQMEKAMKRDNIETNDRQLACAHIK
SQEGQDYLKAMAAAANFAWVNRSSMTFLSRQAFAKQFNSSPDDLDMHVIYDVSHNIAKIE
EHIVEGKQKTLLVHRKGSTRAFPPHHPLIPVDYQLTGQPVLIGGTMGTCSYVLTGTEQGM
KETFGSTCHGAGRALSRAKSRRNLDYMQVLEKLEQLGISIRVASPKLVMEEAPESYKNVT
DVVNTCHAAGISKKCIKLRPIAVIKG
NT seq 1521 nt   +upstreamnt  +downstreamnt
atggttgtaaggcaatatcaagaggagcttaaatatttggagaaaataaatgaatgttgt
tggagaatcaagaaaggctttcaacctaacatgaaggttgaaggagtgttttatgtaaat
aatacattggagcgattaatgtttgatgagttgcgcaatgcatgtcggccaggtgcagtt
ggaggcttccttcctgggatgaaacagattgctaatgtggctgctttacctggtattgta
tggaggtctgtcggattaccagatgtacactctggctatggctttgctattggtaatatg
gcagcatttgatatggatgatccaaagtcaattgtatcacctggtggtgtaggctttgat
attaattgtggtgttcgtttattacgaacaaatttattcgagagagacgtcttaccaata
aaagaacaacttgcgcaaagtatgtttgatcacattccagttggtgttggatctaaagga
attataccaatgaatgcacgggatttagaggaagcgttagaaatgggaatggattggtct
ttgagagaaggttacatttgggctgaagataaagaacattgtgaagaatatggaagaatg
cttaacgctgatccatcaaaagtgtcaatgagagctaagaaacgcggacttcctcaatta
ggtacattaggagctggaaaccattacgcagagattcaagtagtagatgaaatatatgat
aaatgggctgcatataaaatgggtattgaagaaaaaggacaaatttgtgttatgattcat
tcgggaagcagaggatttggtcatcaagttgctacagatgcacttgtacaaatggaaaaa
gctatgaaacgtgacaatattgaaaccaatgacaggcaacttgcatgtgctcatattaaa
tctcaagaaggtcaagattatttgaaagcaatggcagctgctgctaattttgcttgggtt
aatagaagttctatgacattccttagccgacaggcatttgcaaaacaattcaactcgtct
cccgatgatttagatatgcatgttatttatgatgtgtctcataatattgccaaaatagaa
gaacatatagttgaaggaaaacaaaagacacttttagttcatagaaagggatcaacaaga
gcctttccaccgcaccatcctttgattcctgtagattatcagttaacaggtcaaccagtt
ttaattggtggtacaatgggtacatgcagttatgttttgactgggacagaacagggtatg
aaagaaacatttggatcaacatgtcatggtgccggccgtgctctttcaagagcaaagtca
cgtagaaacttggattacatgcaagttttggaaaaattagaacaattaggtatatctatt
cgagttgcttcaccaaaattggttatggaagaagcaccggaatcctataagaatgtaaca
gacgttgttaatacttgtcacgcagctggaatttccaagaaatgcatcaaactgcggcca
atcgcggttattaaaggataa

  All links  
Ontology (3)   
   KEGG BRITE (3)   
Chemical reaction (1)   
   KEGG ENZYME (1)   
Genome (1)   
   KEGG GENOME (1)   
Gene (4)   
   KEGG ORTHOLOGY (1)   
   NCBI-PROTEINID (1)   
   NCBI-Gene (1)   
   OC (1)   
Protein sequence (2)   
   UniProt (1)   
   RefSeq(pep) (1)   
DNA sequence (1)   
   RefSeq(nuc) (1)   
Protein domain (1)   
   Pfam (1)   
All databases (13)   

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