KEGG   Achromobacter sp. AONIH1: C2U31_04535
Entry
C2U31_04535       CDS       T05288                                 
Symbol
rpoC
Name
(GenBank) DNA-directed RNA polymerase subunit beta'
  KO
K03046  DNA-directed RNA polymerase subunit beta' [EC:2.7.7.6]
Organism
achr  Achromobacter sp. AONIH1
Pathway
achr03020  RNA polymerase
Brite
KEGG Orthology (KO) [BR:achr00001]
 09120 Genetic Information Processing
  09121 Transcription
   03020 RNA polymerase
    C2U31_04535 (rpoC)
 09180 Brite Hierarchies
  09182 Protein families: genetic information processing
   03021 Transcription machinery [BR:achr03021]
    C2U31_04535 (rpoC)
   03400 DNA repair and recombination proteins [BR:achr03400]
    C2U31_04535 (rpoC)
Enzymes [BR:achr01000]
 2. Transferases
  2.7  Transferring phosphorus-containing groups
   2.7.7  Nucleotidyltransferases
    2.7.7.6  DNA-directed RNA polymerase
     C2U31_04535 (rpoC)
Transcription machinery [BR:achr03021]
 Prokaryotic type
  Bacterial type
   RNA polymerase
    Core subunits
     C2U31_04535 (rpoC)
DNA repair and recombination proteins [BR:achr03400]
 Prokaryotic type
  SSBR (single strand breaks repair)
   NER (nucleotide excision repair)
    TCR (transcription coupled repair) factors
     DNA-directed RNA polymerase complex (RNAP)
      C2U31_04535 (rpoC)
SSDB
Motif
Pfam: RNA_pol_Rpb1_1 RNA_pol_Rpb1_5 RNA_pol_Rpb1_2 RNA_pol_Rpb1_3 RNA_pol_Rpb1_4 Apocytochr_F_C RPOC_hybrid
Other DBs
NCBI-ProteinID: AUT45308
UniProt: A0A2I8DE75
Position
complement(979085..983329)
AA seq 1414 aa
MKALLDLFKQVSQDEQFDAIKIGIASPEKIRSWSYGEVRKPETINYRTFKPERDGLFCSK
IFGPIKDYECLCGKYKRLKHRGVICEKCGVEVTVAKVRRERMGHIELASPVAHIWFLKSL
PSRLGMVLDMTLRDIERVLYFEAWCVIEPGMTPLKRGQIMSDDDFLAKTEEYGDDFRALM
GAEAVRELLRTIDIDREVETLRGELKATSSEAKIKKISKRLKVLEGFQKSGIKAEWMVME
VLPVLPPDLRPLVPLDGGRFATSDLNDLYRRVINRNNRLKRLLELKAPEIILRNEKRMLQ
EAVDSLLDNGRRGKAMTGANKRQLKSLADMIKGKSGRFRQNLLGKRVDYSGRSVIVVGPQ
LKLHQCGLPKLMALELFKPFIFNRLEMMGLATTIKAAKKLVESQEPVVWDILEEVIREHP
VMLNRAPTLHRLGIQAFEPVLIEGKAIQLHPLVCAAFNADFDGDQMAVHVPLSLEAQLEA
RTLMLASNNVLFPANGEPSIVPSQDIVLGLYYTTRERINGKGEGIFFTDVAEVQRAYDNG
EVELQTRITVRLKEHERDEAGEWQPVIRRHETTVGRALLSEILPKGLPFTVLNKALKKKE
ISRLINQSFRRCGLRDTVIFADKLMQSGFRLATRGGISIAMGDMLIPSAKESILAEASRE
VKEIDKQYSSGLVTSQERYNNVVDIWGKAGDKVGKAMMEQLATEPVTNRHGEEVRQESFN
SIYMMADSGARGSAAQIRQLAGMRGLMAKPDGSIIETPITANFREGLNVLQYFISTHGAR
KGLADTALKTANSGYLTRRLVDVTQDLVITEDDCGTSQGYAMKALVEGGEVIEPLRDRIL
GRVAAIDIVNPDTQETAIEAGTLLDEDMVDTIDRLGVDEVKVRTPLTCETRHGLCAHCYG
RDLGRGSPVNQGEAVGVIAAQSIGEPGTQLTMRTFHIGGAASRSALASAVETKSAGTVGF
ASTMRYVTNAKGERVAISRSGELAIFDDNGRERERHKIPYGATVLVGDGEAVKAGARLAT
WDPLTRPIVSEYGGAVRFENIEEGVTVAKQVDEVTGLSTLVVITPKTRGGKIVMRPQIKL
VNENGDDVKIAGTDHSVNISFPVGALITVRDTQQVAVGEVLARIPQESQKTRDITGGLPR
VAELFEARSPKDAGMLADVTGTVSFGKDTKGKQRLVITDLEGVSHEFLIPKEKQVLVHDG
QVVNKGEMIVDGPADPHDILRLQGIEKLATYIVDEVQDVYRLQGVKINDKHIEVIVRQML
RRVNIVDAGDTEFIPGEQVERSELLNENDRVEAEGKRPASYDNVLLGITKASLSTDSFIS
AASFQETTRVLTEAAIMGKRDDLRGLKENVIVGRLIPAGTGLAYHHARRDKEALEAAERE
AARQLANPFEDAPVTVGSDADAPVADLGAEDAAE
NT seq 4245 nt   +upstreamnt  +downstreamnt
atgaaagcgctactcgacctctttaagcaagtctcgcaagacgagcaattcgatgccatc
aagatcggcatcgcctcgccggagaagatccgttcgtggtcctacggcgaagtccgcaag
cccgagacgatcaactaccgcaccttcaagcccgagcgcgacggtctgttctgctcgaag
atcttcggcccgatcaaggactacgagtgcttgtgcggcaagtacaagcgcctgaagcac
cgcggcgtgatctgcgagaagtgcggcgttgaagtgaccgtcgccaaggtgcgccgcgag
cgcatgggccacatcgaactggccagcccggtcgcgcacatctggttcctgaagagcctg
ccctcgcgtctgggcatggtgctcgacatgaccctgcgcgacatcgaacgcgtgctgtac
ttcgaagcctggtgcgtgatcgaacccggcatgaccccgctcaagcgcggtcagatcatg
tccgacgacgacttcctcgccaagaccgaggaatacggtgacgacttccgcgcgctgatg
ggcgccgaagccgtgcgcgaactgctgcgcaccatcgacatcgaccgcgaagtggaaacg
ctgcgcggcgaactgaaggccaccagctcggaagccaagatcaagaagatctccaagcgc
ctgaaggtgctggaaggcttccagaagtccggcatcaaggccgagtggatggtcatggaa
gtgctgcccgtgctgccgccggacctgcgtccgctggtgccgctggacggcggccgcttc
gcgacctccgacctgaacgacctgtaccgccgcgtcatcaaccgcaacaaccgtctgaag
cgcctgctggagctgaaggcccctgaaatcatcctgcgcaacgaaaagcgcatgctgcag
gaagccgtcgactcgttgctggacaacggccgccgtggcaaggccatgacgggcgccaac
aagcgccagctcaagtccctggccgacatgatcaagggcaagagcggtcgtttccgtcag
aacctgctgggcaagcgcgtcgactactcgggccgttcggtcatcgtggtgggtccgcag
ctcaagctgcatcagtgcggcctgcccaagctgatggccctggaactgttcaagccgttc
atcttcaatcgcctggagatgatgggcctggccacgaccatcaaggccgccaagaagctg
gtggaaagccaggagccggtggtctgggacatcctggaagaagtcatccgcgaacacccg
gtcatgctgaaccgtgcgcccacgctgcaccgtttgggcatccaggcgttcgaaccggtc
ctgatcgaaggcaaggccatccagctgcacccgctggtttgcgcggcgttcaacgccgac
ttcgacggtgaccagatggccgtgcacgtgccgctgtcgctggaagcccagctcgaagcg
cgcacgctgatgctggcctcgaacaacgtgctgttccccgccaacggcgaaccgtcgatc
gtgccgtcccaggacatcgtgctgggtctgtactacacgacccgcgagcgcatcaacggc
aagggcgaaggcatcttcttcaccgacgtcgctgaagtgcagcgcgcctacgacaacggc
gaagtggaactgcagacgcgcatcaccgtgcgcctgaaggaacacgagcgcgacgaagcg
ggcgaatggcagccggtgatccgccgtcacgagacgacggtcggccgcgcgctgctgtcc
gagatcctgccgaagggcctgcccttcacggtgctgaacaaggcgctgaagaaaaaggaa
atctcgcgcctgatcaaccagtcgttccgccgttgcggcctgcgcgacacggtgatcttc
gccgacaagctgatgcagtcgggcttccgcctggccacgcgcggcggcatctcgatcgcc
atgggcgatatgctgatcccgtcggccaaggaaagcatcctggccgaagccagccgcgaa
gtgaaggaaatcgacaagcagtactcgtcgggtctggtcacgtcccaggaacgctacaac
aacgtggtggacatctggggcaaggccggcgacaaggtcggcaaggcgatgatggaacag
ctggccaccgaacccgtgaccaaccgtcacggcgaggaagtgcgccaggaatcgttcaac
tcgatctacatgatggccgactcgggcgcccgtggttcggccgcccagatccgccagctg
gccggcatgcgcggcctgatggccaagccggatggctccattatcgagacgcccatcacg
gcgaacttccgtgaaggcctgaacgtgctgcagtacttcatctcgacccacggcgcgcgt
aagggtctggctgatacggcactgaagaccgcgaactcgggctacctgacccgtcgtctg
gtcgacgtgacgcaggacctggtcatcaccgaagacgattgcggcacctcgcaaggctac
gccatgaaggcgctggtcgaaggcggtgaagtgatcgagccgctgcgcgaccgcatcctg
ggtcgcgttgccgccatcgacatcgtcaacccggacacgcaggaaacggccatcgaggcc
ggcaccctgctggacgaagacatggtcgacaccatcgaccgcctgggcgtggacgaagtc
aaggtccgcacgccgctgacctgcgaaacgcgtcacggcctgtgcgcgcactgctacggt
cgcgacctcggccgcggctcgccggtcaaccagggcgaagcggttggcgtcatcgccgcc
cagtccatcggtgaaccgggcacgcagctgacgatgcgtacgttccacatcggcggcgcg
gcgtcgcgttcggccctggccagcgcggtggaaaccaagtctgccggtaccgtcggcttt
gccagcacgatgcgctacgtcaccaacgccaagggcgaacgcgtggcgatctcgcgctcg
ggcgaactggcgatcttcgacgacaacggtcgtgagcgcgaacgccacaagatcccgtac
ggcgcgaccgtgctggtgggcgatggcgaagccgtcaaggctggcgcccgcctggcgacc
tgggacccgctgacccgtccgatcgtgtcggaatacggcggcgcggtgcgcttcgagaac
atcgaggaaggcgttaccgtcgccaagcaggtggacgaagtcaccggcctgtcgacgctg
gtcgtcatcacgcccaagacgcgcggcggcaagatcgtcatgcgtccgcagatcaagctg
gtcaacgagaacggcgacgacgtcaagatcgccggcaccgatcactcggtgaacatctcg
ttcccggtgggcgcgctgatcaccgtgcgcgacacgcagcaagtggcggttggtgaagtg
ctggcgcgtattccgcaggaatcgcagaagacccgcgacattaccgggggtctgccgcgc
gtggccgagctgttcgaagcccgttcgccgaaggacgccggcatgctggccgacgtcacc
ggcacggtctcgttcggcaaggacaccaagggcaagcagcgcctggtcatcaccgacctg
gaaggcgtcagccacgagttcctgattccgaaggaaaagcaggtgctggtgcacgacggc
caggtggtgaacaagggcgaaatgatcgtggacggcccggccgatccccacgacatcctg
cgcctgcagggcatcgagaagctggcgacctacatcgtcgacgaagtgcaggacgtttac
cgtctgcagggcgtgaagatcaacgacaagcacatcgaagtgattgttcgtcagatgctg
cgtcgtgtgaacatcgtcgacgcgggcgataccgagttcatcccgggcgagcaggtcgag
cgctctgagctgctgaacgagaacgaccgcgtcgaggctgagggcaagcgtccggcttcg
tacgacaacgtgctgctgggcatcaccaaggcctcgctgtcgaccgactcgttcatctcg
gccgcttcgttccaggaaaccacccgggtcctgaccgaggccgccatcatgggcaagcgc
gacgacctgcgcggcttgaaggaaaacgtcatcgtcggccgtctgatcccggccggtacc
ggtctggcgtaccaccatgcccgcagggacaaggaagcgctggaggccgcggaacgcgaa
gccgctcgccagctggccaacccgttcgaggacgcgccggtcacggtgggttccgatgcg
gacgcccctgtcgccgatctgggcgccgaggacgccgccgaataa

  All links  
Ontology (4)   
   KEGG BRITE (4)   
Pathway (1)   
   KEGG PATHWAY (1)   
Chemical reaction (1)   
   KEGG ENZYME (1)   
Genome (1)   
   KEGG GENOME (1)   
Gene (3)   
   KEGG ORTHOLOGY (1)   
   NCBI-PROTEINID (1)   
   OC (1)   
Protein sequence (1)   
   UniProt (1)   
Protein domain (7)   
   Pfam (7)   
All databases (18)   

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