KEGG T01411: AciX9

Granulicella tundricola: AciX9_2128

Entry

AciX9_2128 CDS T01411

Definition

DNA ligase D

Orthology

K01971

DNA ligase (ATP) [EC:6.5.1.1]

Organism

acm Granulicella tundricola

Pathway

acm03410	Base excision repair
acm03420	Nucleotide excision repair
acm03430	Mismatch repair
acm03450	Non-homologous end-joining

Class

Genetic Information Processing; Replication and repair; Base excision repair [PATH:acm03410]
Genetic Information Processing; Replication and repair; Nucleotide excision repair [PATH:acm03420]
Genetic Information Processing; Replication and repair; Mismatch repair [PATH:acm03430]
Genetic Information Processing; Replication and repair; Non-homologous end-joining [PATH:acm03450]

SSDB

Motif

Pfam:

LigD_N DNA_ligase_A_M DNA_ligase_A_C DNA_primase_S

Other DBs

NCBI-GI:

NCBI-GeneID:

JGI:

UniProt:

Position

2489775..2492519

AA seq 914 aa
MPAAKKTATKKIAAKKSVAKKSAKKAVKSKASPSDAVDEQLARYRSMRDFDVTAEPSGKA
QEITRESLPFCIQKHAASHLHYDFRLGWNGVLKSWACAKGPSYNVKDKRLAVQVEDHPIE
YGGFEGIIPAGQYGGGTVMLWDQGTWEPQPGHTDVDAGLRDGNLKFIMHGTKMKGKWALI
RMGGHAATEKKPNWLLIKEHDDFERGPDDEAITDSEPKSVITGRTLEEIAKNEDHVWNSK
ETAKPGQAWYRNDVEADKPVKTAALDLGSLPEEHQPTFLKPQLAQETQTPPSADGWLHEL
KLDGYRMQARKDGKKVQMLTRSGLDWTDRVKAVAAEVARLPYDAVTLDGEVVVVAENGTT
NFADLQASFQEGAKNPLTYFCFDLLHLNGHNPRGLSLLERKKLLAEVLTTADRSTLQFSE
HLETSGEEMFHKACELHAEGIVSKKATAPYTEGRNGNWLKSKCLHEQEFVVGGYTLPSKG
GSGIGALLLGYYDDKARFIYAGRTGTGFTQKGSVIIRKRLEPIEAASSPFNNPSADARRG
AIWTRPSMVVQVRFATWTADDQLRQAAFLGIREDKPASEVRRETAAPTPKSAKSATQPTA
ASHTTKPRVAAKLIAAPTMEKAPVRLTHPDKVVDNETHLTKQQLADFYWAVSERMLPHIA
NRPLSLVRCPEGSEKPCFFQKHTNHMLPPGIGSIDVPDKKTGTPEPYITLDTREALAGLA
QMGCLEVHPWGSCNDDLERADQLTIDLDPDELLPWEVLTGAALDVRKRLKDLGLESWVKT
TGGKGLHVVIPIEPELEWPQIKQWCHGFVNLMERADPKLYLTKMTKSARAGKIYLDYLRN
ERGATAVAPYSPRARKGAGVAVPLAWSELDEPERPVFRVATFPEWGGRLKKDVWADLPKT
KQRISKEAQKAAGL

NT seq 2745 nt +upstreamnt +downstreamnt
atgcccgcagcaaagaagacagccaccaaaaagatagccgcaaagaagtccgtcgcgaag
aagagcgcaaagaaagccgtcaagagcaaggcgtcgccgtccgacgcagtcgatgagcag
cttgcgcgttatcgctccatgcgcgactttgacgtcactgccgagccctccgggaaggcg
caggagatcacccgcgaatctctcccgttctgcatccagaagcacgccgcgtcccacctg
cactatgactttcgtcttggctggaatggtgtgctgaagtcctgggcctgcgccaaggga
cccagctataacgtcaaggacaagcgcctggccgtgcaggttgaagatcaccccatcgag
tacggtggctttgagggcatcatccctgcaggccagtacggtggcggcaccgtcatgctg
tgggaccaggggacctgggagccgcagcccggccacacggacgtcgacgccggcctgcgc
gacggcaacctgaagttcatcatgcatggcaccaagatgaagggaaagtgggcgctgatc
cgcatgggcggtcacgctgcgacggagaagaaaccgaactggctcctcatcaaggaacac
gacgactttgagcgcggcccggatgacgaggccatcaccgactccgagcccaagagcgtc
atcaccggccgaacccttgaagagattgcaaagaacgaagatcacgtctggaactcgaag
gagaccgccaagcctgggcaggcctggtatcgaaacgacgttgaggcagataaaccggtg
aagactgccgctctggacctcggctctctgcccgaagagcatcaacctacctttctcaag
ccgcagttggcgcaggagacccagacgcctccctcagcagacggctggctgcatgaactg
aagctcgacggctaccgcatgcaggcccgcaaggacggcaagaaggtccagatgctcacc
cgcagtgggctggactggactgaccgtgtgaaggccgtggccgctgaggtggcgcgcctg
ccctatgacgcagtcaccctggatggagaggttgtcgtggtcgcggaaaacggcaccacc
aacttcgcggacctgcaggcctcgtttcaggaaggtgcgaagaatcccctcacctacttc
tgcttcgaccttctccacctgaacgggcacaatccgcgcggcctgtcgctgctggagcgc
aagaagctccttgccgaagtcctcaccaccgccgaccgatccacccttcagttcagtgag
cacctcgaaaccagcggtgaggagatgtttcacaaagcctgcgagctccatgccgagggt
atcgtctccaagaaggctaccgcaccctacaccgaaggccgcaatgggaactggctcaaa
tcgaagtgtctccatgagcaggagtttgtcgtcggcggctacacgctgccttcaaagggt
ggctccggtattggtgcgctgctactcgggtactacgatgacaaggcacggttcatctac
gccggccgcaccggcaccggcttcacgcaaaagggtagcgtcatcatccgtaaacgtctc
gagcccatcgaggccgcatcctcccccttcaataacccttccgccgatgctcgccgcggc
gcgatctggacccgtccctccatggtggtgcaggtccgcttcgccacctggaccgcggac
gatcagctccgccaggcagccttccttggcatccgcgaagacaagccagcgtccgaggtt
cggcgcgagaccgcagctccgacaccgaagtccgccaagtcagcaacccagccaaccgcc
gcctcacataccaccaagcctcgcgtagccgccaaactcatcgctgctcctacgatggag
aaggctcctgtccgcctcacgcatccggataaggtcgtggacaacgaaactcacctcacc
aagcagcagcttgccgacttctactgggccgtgtccgagcgcatgctgccccacatcgcc
aatcggccactctcgctcgtccgatgtcctgaggggtccgagaagccctgcttcttccag
aagcacacgaaccacatgctgccgcccggcatcggttcgattgacgtgccggacaagaag
accggcacacccgagccttacatcacgctcgacacgcgtgaggccctggcagggctcgcc
cagatgggctgcctcgaggttcacccgtggggctcctgcaacgatgacctcgaacgcgcc
gaccagcttaccatcgacctcgatccagacgagttgcttccctgggaggttctgactggt
gccgctctcgacgtacgcaagcgcctcaaggacctgggcctggagtcctgggtcaagacc
accggcggcaagggtctgcacgtcgtcatccccatcgagccggagctggaatggccgcag
atcaagcagtggtgccacggcttcgtgaacctgatggagcgtgccgatcccaagctttat
ctgaccaagatgaccaagtcggcccgcgccggcaagatctatctcgactaccttcgcaac
gaacgtggggctaccgctgtcgccccttattcaccccgcgcacgcaagggtgcgggcgtt
gctgtgcctctcgcatggtctgagttggacgagcccgagcgccccgtcttccgcgtcgca
accttcccggagtggggtggacggctcaagaaagatgtctgggcggacctgcccaaaacg
aagcagcgcatcagcaaggaagctcagaaagccgcaggcctctaa

All links

Pathway (4)   
   KEGG PATHWAY (4)   
Chemical reaction (1)   
   KEGG ENZYME (1)   
Genome (1)   
   KEGG GENOME (1)   
Gene (5)   
   KEGG ORTHOLOGY (1)   
   NCBI-Gene (1)   
   NCBI-GI (1)   
   JGI-ACM (1)   
   OC (1)   
Protein sequence (2)   
   UniProt (1)   
   RefSeq(pep) (1)   
Protein domain (4)   
   Pfam (4)   
All databases (17)   

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