KEGG   Acidiphilium cryptum: Acry_1754
Entry
Acry_1754         CDS       T00527                                 
Name
(GenBank) transcription-repair coupling factor
  KO
K03723  transcription-repair coupling factor (superfamily II helicase) [EC:5.6.2.4]
Organism
acr  Acidiphilium cryptum
Pathway
acr03420  Nucleotide excision repair
Brite
KEGG Orthology (KO) [BR:acr00001]
 09120 Genetic Information Processing
  09124 Replication and repair
   03420 Nucleotide excision repair
    Acry_1754
 09180 Brite Hierarchies
  09182 Protein families: genetic information processing
   03400 DNA repair and recombination proteins [BR:acr03400]
    Acry_1754
Enzymes [BR:acr01000]
 5. Isomerases
  5.6  Isomerases altering macromolecular conformation
   5.6.2  Enzymes altering nucleic acid conformation
    5.6.2.4  DNA 3'-5' helicase
     Acry_1754
DNA repair and recombination proteins [BR:acr03400]
 Prokaryotic type
  SSBR (single strand breaks repair)
   NER (nucleotide excision repair)
    TCR (transcription coupled repair) factors
     TRCF (transcription-repair coupling factor)
      Acry_1754
SSDB
Motif
Pfam: TRCF DEAD UvrB_inter Helicase_C CarD_TRCF_RID MFD_D3 ResIII UB2H RecG_dom3_C SecA_DEAD
Other DBs
NCBI-ProteinID: ABQ30958
UniProt: A5FZC6
Position
complement(1934517..1937951)
AA seq 1144 aa
MSLLTVYGAPEGFDADLIARRAAEAGTVLHIARDDARLARLEDALAFFAPAAEIIRFPAW
DCLPYDRVSPNPAIVADRVAALARLLEPAKGTRIVLTTVNAAVQRTPPRARFADASRTIA
PGGAAPPDDLARFLEQRGYHRVGTVMEPGDFAVRGGIFDVWPSGEPAPARIDLFGDTVDT
LRRFDPGTQRSGEALPSLTFRPASELPLDADSISRFRTGFRELFGAEALTDPLYESVSEG
RRHPGMEHFAPLFCATMETVFDYAPGAAISLDHQAEEAAAARFEMIADHYEARSAPPRAG
EAPYRPVAPARLYLDRAGLDALLRARGATVFSPFSRPEGAEGVEAGGRPGAILASAQGIA
SVYEEFRLLAARWREAGRRVVLAAWSAGSRDRLAALLRDHGMRSIPIDNAAEARIAQGDA
VLLAVLGLERGYVADDLAIVAEQDLLGQRIARPPRRRQRADQFIADATEIAEGDLVVHQD
HGIGRYDGLVTLSVEGAPHDCLRILYDGDQKLFLPVENIDMLSRFGSETAGVGLDRLGGA
SWQARKAKARNRIRDMAAGLIRIAAERKLHDAAILAADDGAFAEFCARFPYTETEDQARA
IADVMEDLAAGKPMDRLVCGDVGFGKTEVALRAAFIAAMSGAQVAVVVPTTLLARQHYRL
FSERFAGLPIRVEQLSRLVSAKDTAKVKAGLADGTVNIVVGTHALLSKTIAFADLALLIV
DEEQHFGVAHKERLKQLKADIHVLTLTATPIPRTLQLALTGVRDLSLITTPPVDRLAVRT
FIMPWDKLVIREAIARERFRGGQIFCVVPHIEDIDRMRERLAEIAPDLRTATAHGRLPPT
EIERVMTEFSEGKHDVLLATNIVESGLDMPAVNTILIWRADLFGLGQLYQLRGRVGRGKQ
RGYAYLTWPASHTLAASSQKRLEVMQTLDTLGAGFTLASHDLDLRGAGNLLGDEQSGHIR
EVGIELYQQMLEDAVAELRAAGGSESREAARDWTPNISLGLPVLIPEAYVADLPVRLGLY
RRIGGLATDAESEALAAELVDRFGPMPEEVENLLATVALKRACRAVGVEKLEAGPKGMVV
AFRGNAFANPGGLVAWLATRAGLLRLRPDHKLVMVREMDVKARLAAARDIISNLQRIIDQ
SKAA
NT seq 3435 nt   +upstreamnt  +downstreamnt
atgagcctgctcaccgtctacggcgcgccggaagggttcgacgccgacctgatcgcccgc
cgcgccgccgaggcgggcacggtgctgcacatcgcgcgcgacgatgcccgcctcgcccgg
ctggaggacgcgctcgccttcttcgcccccgccgccgagatcatccgcttccccgcctgg
gactgcctgccctacgaccgcgtctcgcccaacccggcgatcgtggccgaccgcgtcgcc
gccctggcccggctgctggaaccggcgaagggcacccgcatcgtgctgaccacggtgaac
gccgcggtccagcgcaccccgccgcgcgcgcgcttcgccgatgccagccgcaccatcgcc
cccggcggcgccgccccgccggacgatctcgcccgcttcctcgaacagcgcggctatcac
cgcgtcggcaccgtcatggagccgggcgacttcgccgtgcgcggcggcattttcgatgtc
tggccctccggcgagccggcgccggcccgcatcgacctgttcggcgacacggtggacacg
ctccgccgcttcgatcccggcacccagcgcagcggcgaggcgctgccctcgctcaccttc
cgccccgcctccgaactcccgctcgacgccgactcgatcagccgcttccgcaccggcttc
cgcgagctgttcggcgccgaggcgctgaccgacccgctctacgaatcggtctccgagggc
cgccgccatcccggcatggagcatttcgcgccgctcttctgcgcgacgatggaaaccgtg
ttcgactatgcgcccggtgccgccatcagcctcgaccaccaggccgaggaggccgccgcc
gcccgcttcgagatgatcgccgatcactacgaggcccgctccgccccgccccgcgccggc
gaggcgccgtaccggccggtcgcgcccgcgcgcctctatctcgaccgcgccggcctcgat
gcgctgctccgcgcccgcggggcaaccgtgttctcgcccttctcccggcccgagggcgcc
gagggcgtggaagccggcggccgccccggcgccatcctcgcctccgcccagggcatcgcc
tcggtctatgaggaattccgcctgctcgccgcccgctggcgcgaggccgggcgccgcgtc
gtcctcgccgcctggtccgccggctcgcgcgaccgtctcgccgccctgctgcgcgaccac
ggcatgcgctcgatcccgatcgacaacgccgccgaggcccgcatcgcccagggcgacgcc
gtgctgctcgccgtcctcggtctcgaacgcggctatgtcgccgacgatctcgccatcgtc
gccgagcaggacctgctcggccagcgcatcgcccgcccgccgcgccgccgccagcgcgcc
gaccagttcatcgccgacgctaccgaaatcgccgagggcgatctcgtcgtgcatcaggat
cacggcatcggccgctatgacgggctggtgacgctgagcgtcgagggcgcgccgcatgac
tgcctgcgcatcctctatgatggcgaccagaagctcttcctgccggtcgagaacatcgac
atgctctcccgcttcggcagcgagaccgccggcgtcgggctcgaccgcctgggcggcgcc
tcctggcaggcgcgcaaggccaaggcccgcaaccgcatccgcgacatggcggccggcctc
atccgcatcgccgccgagcgcaagctgcacgacgccgcgatcctcgccgccgatgacggc
gccttcgccgaattctgcgcccgcttcccctacaccgaaaccgaggaccaggctcgcgcc
atcgccgacgtgatggaagatctcgccgccggcaagccgatggaccggctggtctgcggc
gatgtcggcttcggcaagaccgaggtcgcgctccgcgccgccttcatcgccgcgatgtcc
ggcgcccaggtcgccgtggtggtgccgaccacgctgctcgcccgccagcactaccgcctg
ttctccgagcgcttcgccggcctgcccatccgcgtcgagcagctctcccgcctcgtctcc
gccaaggataccgcgaaggtgaaggccggcctcgccgacggcacggtgaacatcgtcgtc
ggcacccatgcgctgctgtcgaaaacgatcgccttcgccgacctcgcgctgctgatcgtc
gacgaggagcagcatttcggcgtcgcccacaaggaacggctgaagcagctcaaggcggac
atccacgtcctcaccctgaccgcgacgccgatcccccgcaccctccagctcgcgctgacc
ggcgtgcgcgacctctcgctgatcaccaccccgccggtcgaccgtctcgccgtgcgcacc
ttcatcatgccgtgggacaagctggtgatccgcgaggccatcgcccgcgagcgcttccgc
ggcgggcagatcttctgcgtcgtcccgcatatcgaggatatcgaccggatgcgcgagcgc
ctggccgagatcgcgccggacctgcgcaccgccaccgcccatggccgcctgccgccgacc
gagatcgagcgggtgatgaccgagttcagcgaaggcaagcacgacgtcctgctcgccacc
aacatcgtcgaatccgggctcgacatgccggcggtgaacacgatcctgatctggcgcgcc
gatctcttcggcctcggccagctctaccagctgcgcggccgcgtcggccgcggcaagcag
cgcggctacgcctatctcacctggcccgcctcgcacacgctcgccgcctcctcgcagaag
cgcctcgaagtgatgcagacgctcgacacgctcggcgccggcttcaccctcgcctcgcac
gatctcgacctgcgcggcgccggcaacctgctgggcgacgaacagtccggccatatccgc
gaggtcggcatcgagctctaccagcagatgctggaggatgcggtggccgaactgcgcgcg
gccggcggcagcgaatcgcgcgaggccgcgcgggactggacgccgaatatcagcctcggc
ctgcccgtcctcatccccgaagcctatgtggccgacctgccggtccgcctcggcctctac
cgccgcatcggcggactcgcgaccgatgccgagagcgaggcgctcgccgccgagctggtc
gaccgtttcggcccgatgcccgaggaggtggaaaacctcctcgccacggtggcgctgaag
cgcgcctgccgcgccgtcggcgtcgagaagctggaggccgggccgaagggcatggtcgtc
gccttccgcggcaacgcattcgccaatcccggcggcctcgtcgcctggctcgccacccgc
gccggcctgctccgcctgcgcccggaccacaagctggtcatggtccgcgagatggacgtg
aaggcccgcctcgccgcggcccgcgacataatatcgaacctgcaacgcattatcgaccag
tcgaaggcggcatga

  All links  
Ontology (3)   
   KEGG BRITE (3)   
Pathway (1)   
   KEGG PATHWAY (1)   
Chemical reaction (1)   
   KEGG ENZYME (1)   
Genome (1)   
   KEGG GENOME (1)   
Gene (22)   
   KEGG ORTHOLOGY (1)   
   RefGene (19)   
   NCBI-PROTEINID (1)   
   OC (1)   
Protein sequence (1)   
   UniProt (1)   
Protein domain (10)   
   Pfam (10)   
All databases (39)   

Download RDF
DBGET integrated database retrieval system