KEGG   Acidovorax sp. RAC01: BSY15_1817
Entry
BSY15_1817        CDS       T04481                                 
Symbol
rpoC
Name
(GenBank) DNA-directed RNA polymerase, beta' subunit
  KO
K03046  DNA-directed RNA polymerase subunit beta' [EC:2.7.7.6]
Organism
acra  Acidovorax sp. RAC01
Pathway
acra03020  RNA polymerase
Brite
KEGG Orthology (KO) [BR:acra00001]
 09120 Genetic Information Processing
  09121 Transcription
   03020 RNA polymerase
    BSY15_1817 (rpoC)
 09180 Brite Hierarchies
  09182 Protein families: genetic information processing
   03021 Transcription machinery [BR:acra03021]
    BSY15_1817 (rpoC)
   03400 DNA repair and recombination proteins [BR:acra03400]
    BSY15_1817 (rpoC)
Enzymes [BR:acra01000]
 2. Transferases
  2.7  Transferring phosphorus-containing groups
   2.7.7  Nucleotidyltransferases
    2.7.7.6  DNA-directed RNA polymerase
     BSY15_1817 (rpoC)
Transcription machinery [BR:acra03021]
 Prokaryotic type
  Bacterial type
   RNA polymerase
    Core subunits
     BSY15_1817 (rpoC)
DNA repair and recombination proteins [BR:acra03400]
 Prokaryotic type
  SSBR (single strand breaks repair)
   NER (nucleotide excision repair)
    TCR (transcription coupled repair) factors
     DNA-directed RNA polymerase complex (RNAP)
      BSY15_1817 (rpoC)
SSDB
Motif
Pfam: RNA_pol_Rpb1_1 RNA_pol_Rpb1_5 RNA_pol_Rpb1_2 RNA_pol_Rpb1_3 RNA_pol_Rpb1_4 Apocytochr_F_C
Other DBs
NCBI-ProteinID: AOG25138
UniProt: A0A1B3PQV2
Position
2008333..2012571
AA seq 1412 aa
MKSLLDLFKQFTPDEHFDAIRIGMASPEKIRSWSFGEVKKPETINYRTFKPERDGLFCAK
IFGPIKDYECLCGKYKRLKHRGVICEKCGVEVTQTKVRRERMGHIDLAAPCAHIWFLKSL
PSRLGLVLDMTLRDIERVLYFEAYVVTDPGMTPLKKFSIMSEDDYDAKRKEYGDEFIAKM
GAEGIKDLLESIDIDLSIEKLRGDLTGSEVKVKKNAKRLKVLEAFKKSGIKPEWMVLEVL
PVLPPDLRPLVPLDGGRFATSDLNDLYRRVINRNSRLRRLLELKAPEIIARNEKRMLQEA
VDSLLDNGRRGKAMTGANKRALKSLADMIKGKSGRFRQNLLGKRVDYSGRSVITVGPTLK
LHQCGLPKLMALELFKPFIFSRLEAMGIATTIKAAKKEVESGTPVVWDILEEVIKEHPVM
LNRAPTLHRLGIQAFEPILIEGKAIQLHPLVCAAFNADFDGDQMAVHVPLSVEAQMEART
LMLASNNVLFPASGEPSIVPSQDVVLGLYYATRDRINGKGEGLVFADTGEVQRALDAGEV
ELAAKITVRMTEWTKDKATGEFVPSTSLVETTAGRALLSEILPKGLPFSNMNKALKKKEI
SKLINVSFRKCGLKETVVFADKLLQNGFRLATRAGISIAIDDMLVPPQKAGIIERSEKEV
KEIEQQYVSGLVTSGERYNKVVDIWGKAGDEVSKVMMAQLSKQKVTDRHGKEVDQESFNS
IYMMADSGARGSAAQIRQVAGMRGLMAKPDGSIIETPITANFREGLNVLEYFISTHGARK
GLADTALKTANSGYLTRRLVDVTQDLVVTEEDCNTSNGSLMRAIVEGGEVIESLRDRILG
RTAAEDVLHPETRAVLVEAGVMLEEDLIEELEAAGVDEVKVRTALTCETRYGLCAKCYGR
DLGRGGLINLGEAVGVIAAQSIGEPGTQLTMRTFHIGGAASRAAIASSVEAKSNGVIGFN
ATMRYVSNTKGELVVIARSGEIIIHDEHGRERERHKVPYGATLTVKADQTIKAGTILANW
DPLTRPIITEFAGQTKFENVEEGLTVAKQVDEVTGLSTLVVIDPKRRGAAKVVRPQVKLI
DAQGNEVKIPGTDHSVTIGFQVGALIQVRDGQDVGPGEVLARIPVEGQKTRDITGGLPRV
AELFEARTPKDKGTLAEMTGTVSFGKETKGKVRLQITDPEGHVFEELVPKEKNILVHEGQ
VVNKGESIVDGPADPQDILRLLGIEELSRYIVDEVQDVYRLQGVKINDKHIEVIVRQMLR
RVVVENVGESNYIAGEQVERSEILNTNDALQGEGKIPATYSNLLLGITKASLSTDSFISA
ASFQETTRVLTEAAIMGKRDELRGLKENVIVGRLIPAGTGMAYHQARKAKDAMDDAERRA
IAEAEAAEMEAQGAASDEESSSTATAADSAAD
NT seq 4239 nt   +upstreamnt  +downstreamnt
atgaaatcgctactcgacctgttcaagcaattcacgccggacgagcatttcgatgccatc
cgcatcggcatggcctcgcccgagaagatccgttcgtggtcttttggtgaggtgaagaag
cccgaaaccatcaactaccgcacattcaagcccgagcgtgacggcctgttttgcgccaag
atttttggtcccatcaaggactacgaatgcctgtgcggaaagtacaagcgcctcaagcac
cgcggtgtgatctgtgagaagtgcggcgttgaagtcacgcagaccaaggtgcgtcgcgag
cgcatgggccacatcgatctggccgcgccttgcgctcacatctggttcctgaagtcgctg
ccttcgcgtctgggcctggtgctcgacatgacgctgcgcgacatcgaacgcgtgctgtac
ttcgaagcctacgtggtgaccgaccccggcatgaccccgctgaagaagttcagcatcatg
tccgaggacgactacgacgccaagcgcaaggaatacggcgacgagttcatcgccaagatg
ggcgcggaaggcatcaaggacctgctggaatccatcgacatcgacctgtcgatcgagaag
ctgcgtggcgacctgactggctctgaagtcaaggtcaagaagaacgccaagcgcctgaag
gtgctcgaagccttcaagaagtcgggcatcaagcccgaatggatggtgctggaagtgctg
cctgtgctgccaccggacctgcgtccgctggtgccgctggacggcggccgcttcgcgacc
tccgacctgaacgacctgtaccgccgcgtcatcaaccgcaactcgcgtctgcgccgcctg
ctggagctcaaggcccctgaaatcatcgcccgcaacgaaaagcggatgctgcaagaggcg
gttgactcgctgctggacaacggccgccgtggcaaggccatgacgggcgccaacaagcgt
gcgctgaagtcgctcgccgacatgatcaagggcaagtccggccgcttccgccagaacttg
ctgggcaagcgcgtggactactccggtcgttccgtgattaccgtgggcccaacgctcaag
ctgcaccagtgcggtctgcccaagctgatggcgctggagctgttcaaacctttcatcttc
tcgcgcctcgaagccatgggcatcgcgacgacgatcaaggccgccaagaaggaagtcgaa
tccggcacccccgtggtgtgggacatcctggaagaggtcatcaaggaacaccccgtgatg
ctcaaccgtgcacctacgctgcaccgtctgggcatccaggcctttgagcccatcctgatt
gaaggcaaggccatccagctgcacccactcgtctgcgcggcctttaacgccgacttcgac
ggtgaccagatggctgtccacgtcccgctgtcggtggaagcacaaatggaagcccgcacg
ctgatgctggcctccaacaacgtgctgttcccggcctcgggcgaaccctccattgttcct
tcgcaggacgtggtgctgggcctgtactacgccacccgtgaccgtatcaacggcaagggc
gaaggcctggtgtttgccgacaccggcgaagtgcaacgcgcgctggatgcgggcgaggtc
gagctggcggctaagatcactgtgcgcatgaccgagtggaccaaggacaaggccacgggc
gaatttgtgccctcgacctcgctggtggaaaccactgccggccgcgcgctgctgtccgag
atcttgcccaagggcctgccgttcagcaacatgaacaaggcgctcaagaagaaggaaatc
tccaagctcatcaacgtgagcttccgcaagtgcggcctgaaggaaaccgtggtgtttgca
gacaagctgctgcaaaacggcttccgcctggccacgcgcgccggtatctcgatcgccatc
gacgacatgctggtgccgccgcaaaaggccggcatcattgagcgctccgagaaggaagtc
aaagagatcgaacagcagtacgtgtccggtctggtgacgtctggcgagcgctacaacaag
gtggtggacatctggggcaaggccggcgacgaagtgtccaaggtgatgatggcccagctg
tcgaagcaaaaggtcaccgaccgccatggcaaggaagtggaccaggagtctttcaactcc
atctacatgatggccgactccggtgcccgcggctctgcagcccagatccgtcaggtggcc
ggtatgcggggtctgatggccaagccagacggctcgatcatcgagacacccattaccgcg
aacttccgcgaaggtctgaacgtgctggagtacttcatctccacccacggtgcccgtaag
ggtctggccgacacggcgctgaagacggcgaactccggctacctcacccgccgcctggtg
gacgtgacgcaggatctggtcgtgaccgaagaggactgcaacacctccaatggttcgctg
atgcgcgccatcgtcgagggtggtgaagtgatcgaatcgctgcgcgaccgtatcctgggc
cgcacggctgccgaagacgtgctgcaccccgaaacgcgtgcggtgctggtcgaggccggc
gtgatgctggaagaagacctcatcgaggagctggaagctgccggcgtcgacgaagtcaag
gtgcgcaccgcgctgacctgcgaaacccgctacggcctgtgcgccaagtgctacggccgc
gacctgggccgtggcggcctgatcaacctcggcgaagccgtgggtgtgatcgctgcccag
tccatcggcgaacccggcacgcagctgaccatgcgtacgttccacatcggtggtgccgct
tcgcgcgctgccatcgcatcgagcgtggaagccaagtccaacggcgtgatcggcttcaac
gccacgatgcgctacgtgagcaacaccaagggtgagctggtggtgattgcacgttcgggt
gaaatcatcatccacgacgagcatggccgcgagcgcgaacgccacaaggtgccgtacggc
gccacgctgaccgtcaaggcagaccagacgatcaaggccggcacgatcctggccaactgg
gatccgctgacgcgccccatcatcaccgagttcgccggccagaccaagttcgagaacgtc
gaagaaggtctcacggttgcgaagcaggtcgatgaggtgaccggtctttccaccctggtg
gtgatcgaccccaagcgccgcggcgctgccaaggttgttcgcccacaggtcaagctgatc
gacgcccagggcaacgaagtgaagatccctggcaccgaccactcggtgaccatcggcttc
caggtcggcgcgctgatccaggtacgcgacggccaggacgtgggccccggcgaagtgctg
gcccgtatcccggtcgaaggtcaaaagacccgcgacattaccggtggtctgccccgcgtg
gccgagctgttcgaagcccgtacgccgaaggacaagggcacgctggccgagatgaccggt
accgtgtcgttcggcaaggaaaccaagggcaaggtccgcttgcagatcaccgatccggaa
ggccacgtgttcgaagaactcgtgcccaaggaaaagaacatcctggtgcacgaaggccag
gtggtgaacaagggcgaatcgattgtggacggcccggccgacccgcaggacattctgcgt
ttgctgggtatcgaagaactctcgcgctacatcgtcgatgaagtgcaggacgtgtaccgt
ttgcagggcgtgaagatcaacgacaagcacatcgaggtgatcgttcgccagatgctgcgc
cgcgtcgtggtcgagaacgttggcgagtccaactacatcgcaggcgagcaggtcgagcgt
tcggagatcctgaacaccaacgatgcgctgcagggtgaaggcaagattcccgcgacctac
agcaacctgctgctgggtatcacgaaggcatcgctttcgaccgactcgttcatctcggcc
gcttccttccaggaaacgacccgtgtgctcaccgaggctgccatcatgggcaagcgcgac
gagctgcgtggcctgaaggaaaacgtcatcgtgggtcgcctgatccctgccggtaccggc
atggcctaccaccaggcacgcaaggccaaggacgccatggacgacgccgagcgccgtgcc
atcgccgaagccgaagctgccgaaatggaagcccagggcgctgcctctgatgaggaaagc
agcagcacggccaccgcggcggattctgctgcggactaa

  All links  
Ontology (4)   
   KEGG BRITE (4)   
Pathway (1)   
   KEGG PATHWAY (1)   
Chemical reaction (1)   
   KEGG ENZYME (1)   
Genome (1)   
   KEGG GENOME (1)   
Gene (3)   
   KEGG ORTHOLOGY (1)   
   NCBI-PROTEINID (1)   
   OC (1)   
Protein sequence (1)   
   UniProt (1)   
Protein domain (6)   
   Pfam (6)   
All databases (17)   

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