KEGG   Anolis carolinensis (green anole): 100553365
Entry
100553365         CDS       T01608                                 
Symbol
lsm3
Name
(RefSeq) LSM3 homolog, U6 small nuclear RNA and mRNA degradation associated
  KO
K12622  U6 snRNA-associated Sm-like protein LSm3
Organism
acs  Anolis carolinensis (green anole)
Pathway
acs03018  RNA degradation
acs03040  Spliceosome
Brite
KEGG Orthology (KO) [BR:acs00001]
 09120 Genetic Information Processing
  09121 Transcription
   03040 Spliceosome
    100553365 (lsm3)
  09123 Folding, sorting and degradation
   03018 RNA degradation
    100553365 (lsm3)
 09180 Brite Hierarchies
  09182 Protein families: genetic information processing
   03019 Messenger RNA biogenesis [BR:acs03019]
    100553365 (lsm3)
   03041 Spliceosome [BR:acs03041]
    100553365 (lsm3)
Messenger RNA biogenesis [BR:acs03019]
 Eukaryotic type
  mRNA surveillance and transport factors
   mRNA cycle factors
    P-body specific factors
     100553365 (lsm3)
  mRNA degradation factors
   5'-3' decay
    Lsm complex
     100553365 (lsm3)
Spliceosome [BR:acs03041]
 Complex B
  U4/U6.U5 tri-snRNP components
   LSm proteins
    100553365 (lsm3)
 Complex C
  U2 snRNP components
    100553365 (lsm3)
SSDB
Motif
Pfam: LSM TIG_SUH vATP-synt_E DUF150_C
Other DBs
NCBI-GeneID: 100553365
NCBI-ProteinID: XP_003217786
Ensembl: ENSACAG00000013503
Position
2:169455637..169460943
AA seq 102 aa
MADEVDQQQTTNTVEEPLDLIRLSLDERIYVKMRNDRELRGRLHAYDQHLNMILGDVEET
VTTIEIDEETYEEIYKSTKRNIPMLFVRGDGVVLVAPPLRVG
NT seq 309 nt   +upstreamnt  +downstreamnt
atggcggacgaagttgatcagcaacaaactactaatacagtagaagaacctttggacctc
atcagacttagtcttgatgaacgaatttatgtgaaaatgagaaatgaccgagaacttcga
ggcagattacatgcgtacgaccagcatttgaatatgattttgggtgatgttgaagaaact
gtgacaactatagagattgatgaggaaacatatgaggagatctacaaatccaccaagagg
aatatcccaatgctgtttgtcagaggagatggagttgtacttgttgctcctccactgagg
gttggctga

  All links  
Ontology (3)   
   KEGG BRITE (3)   
Pathway (2)   
   KEGG PATHWAY (2)   
Genome (1)   
   KEGG GENOME (1)   
Gene (14)   
   KEGG ORTHOLOGY (1)   
   RefGene (9)   
   NCBI-PROTEINID (1)   
   NCBI-Gene (1)   
   Ensembl (1)   
   OC (1)   
Protein sequence (1)   
   RefSeq(pep) (1)   
DNA sequence (7)   
   RefSeq(nuc) (1)   
   GenBank (3)   
   EMBL (3)   
Protein domain (4)   
   Pfam (4)   
All databases (32)   

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