KEGG   Anolis carolinensis (green anole): 100561016
Entry
100561016         CDS       T01608                                 
Symbol
pnldc1
Name
(RefSeq) PARN like, ribonuclease domain containing 1
  KO
K01148  poly(A)-specific ribonuclease [EC:3.1.13.4]
Organism
acs  Anolis carolinensis (green anole)
Pathway
acs03018  RNA degradation
Brite
KEGG Orthology (KO) [BR:acs00001]
 09120 Genetic Information Processing
  09123 Folding, sorting and degradation
   03018 RNA degradation
    100561016 (pnldc1)
 09180 Brite Hierarchies
  09182 Protein families: genetic information processing
   03019 Messenger RNA biogenesis [BR:acs03019]
    100561016 (pnldc1)
Enzymes [BR:acs01000]
 3. Hydrolases
  3.1  Acting on ester bonds
   3.1.13  Exoribonucleases producing 5'-phosphomonoesters
    3.1.13.4  poly(A)-specific ribonuclease
     100561016 (pnldc1)
Messenger RNA biogenesis [BR:acs03019]
 Eukaryotic type
  mRNA degradation factors
   3'-5' decay
    Other 3'-5' decay factors
     100561016 (pnldc1)
SSDB
Motif
Pfam: CAF1
Other DBs
NCBI-GeneID: 100561016
NCBI-ProteinID: XP_008121494
Ensembl: ENSACAG00000013667
UniProt: G1KP33
Position
1:complement(212140008..212172697)
AA seq 529 aa
MDICASQFEERLPELQELLSGCDFVGLDMEFTGLRSVLPDRQPSFFDSPAEWYQKARQSI
QQFTVSQLGLSIFCRETSTKYVAHSYNFFLFPTTFGQIDSELSFQASSIQFLSHYGFDFN
KFLKDGIPYMNETQEKKMEHLVPGSWMVRSGFGKDKLKKVIEEVTCWVSSAEEKDSMVLH
DLYDFQMFEVQLILRQAIKDIWTIPLGDHKVLVKKMNPHQRWLLENTSYDSCQKEQIILC
AKGFTNLFQALVKAKKPLVGHNMMMDLLHLHEKFYNPLPENYEEFKKNMHTLFPIILDTK
NISKSIWKEFQFPQASSLSEVYEELCSVINTTNQSCPEIFHARDCLRYTTKMCLHEAAYD
AFLCGSVLLKIAHLLFCNISCDNTRAASYFSQYLDVLSTYVNQVNLIRASIQKINFSGLD
DHTKHLPLLIANVRRWPGVNEEQIHRELGIFCRFDVRRLRMNQFLLLSNRLRNIRMVLEE
YKTHPNLQISLYYYWRHAPEVNCFLQICGIVVSWSLLAFFLGGSSSCAV
NT seq 1590 nt   +upstreamnt  +downstreamnt
atggatatctgcgcctcgcagttcgaggagaggctgcccgagttacaggagctcctctcg
ggatgcgattttgtcggtcttgacatggaattcacaggtttacgttcagtcctaccagat
agacagcccagtttctttgattcacctgccgagtggtatcagaaagccaggcagagtatt
cagcagtttacagtgagtcagcttggcttgtcgatattttgtcgtgaaacatcaactaag
tatgtggcccattcatataactttttcctcttccctacaacatttggccagattgattca
gagttgtctttccaagcatcaagcatccagtttctatctcactatggttttgactttaat
aagtttcttaaagatggaattccatacatgaatgaaacacaggagaaaaaaatggaacat
cttgtacctggtagttggatggtccgtagtggttttggcaaagataagctgaagaaggta
attgaagaagttacttgctgggtatcttcagcagaagagaaagattccatggttctacat
gatctgtatgactttcagatgtttgaagtacagctgattttaagacaagctattaaagat
atttggactatccctttaggagatcataaagtgctggtgaaaaagatgaatccacaccag
cgttggctgctggagaacacttcttatgactcttgtcaaaaagagcaaattattttgtgt
gcaaagggctttaccaatcttttccaggcacttgttaaagccaaaaagccgctggtggga
cacaatatgatgatggatcttttgcatctgcatgagaaattttacaatccgcttcctgag
aactatgaagagtttaaaaagaacatgcacactctgtttcccatcatcttggacacaaaa
aatatttcaaagtccatttggaaggaatttcagtttcctcaagcttctagcctttcggaa
gtttatgaagagctttgcagtgtcataaatacaacaaaccagtcttgtccagaaatcttt
cacgcaagggattgcctcagatacaccacaaagatgtgtctccatgaagcagcgtatgat
gcattcctctgcggatcagttcttcttaaaattgctcatttgctcttttgcaacatttct
tgtgataacacaagggctgcctcctatttttcccagtacctcgacgttttatctacatat
gtgaatcaggtgaaccttatccgagctagtattcagaaaattaatttttctggcctggat
gaccatacaaaacacctcccgcttctgatagctaatgtacgaagatggcctggagtgaat
gaagagcaaatccatcgagagttaggaatcttctgcaggtttgatgtgcggcggctaaga
atgaaccagtttctcttgctgtccaatagacttagaaacatcaggatggtgctggaagaa
tataaaacccatcccaacctacagatttctctctattactactggaggcatgccccagaa
gtgaactgtttcctccaaatttgtggcattgttgtgtcttggtctttgctagccttcttc
cttggcggctcctccagttgtgctgtgtga

  All links  
Ontology (3)   
   KEGG BRITE (3)   
Pathway (1)   
   KEGG PATHWAY (1)   
Chemical reaction (1)   
   KEGG ENZYME (1)   
Genome (1)   
   KEGG GENOME (1)   
Gene (18)   
   KEGG ORTHOLOGY (1)   
   RefGene (13)   
   NCBI-PROTEINID (1)   
   NCBI-Gene (1)   
   Ensembl (1)   
   OC (1)   
Protein sequence (4)   
   UniProt (1)   
   RefSeq(pep) (3)   
DNA sequence (7)   
   RefSeq(nuc) (3)   
   GenBank (2)   
   EMBL (2)   
Protein domain (1)   
   Pfam (1)   
All databases (36)   

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