KEGG   Anolis carolinensis (green anole): 100561368
Entry
100561368         CDS       T01608                                 
Symbol
pabpc1l
Name
(RefSeq) poly(A) binding protein cytoplasmic 1 like
  KO
K13126  polyadenylate-binding protein
Organism
acs  Anolis carolinensis (green anole)
Pathway
acs03015  mRNA surveillance pathway
acs03018  RNA degradation
Brite
KEGG Orthology (KO) [BR:acs00001]
 09120 Genetic Information Processing
  09122 Translation
   03015 mRNA surveillance pathway
    100561368 (pabpc1l)
  09123 Folding, sorting and degradation
   03018 RNA degradation
    100561368 (pabpc1l)
 09180 Brite Hierarchies
  09182 Protein families: genetic information processing
   03019 Messenger RNA biogenesis [BR:acs03019]
    100561368 (pabpc1l)
   03041 Spliceosome [BR:acs03041]
    100561368 (pabpc1l)
Messenger RNA biogenesis [BR:acs03019]
 Eukaryotic type
  mRNA surveillance and transport factors
   Transport factors
    eIF4F and regulatory proteins
     100561368 (pabpc1l)
   mRNA cycle factors
    Stress granule specific factors
     100561368 (pabpc1l)
Spliceosome [BR:acs03041]
 Complex C
  Other components
   Complex C specific factors
    100561368 (pabpc1l)
SSDB
Motif
Pfam: RRM_1 PABP Nup35_RRM RRM_occluded RRM_3
Other DBs
NCBI-GeneID: 100561368
NCBI-ProteinID: XP_008108292
Ensembl: ENSACAG00000011841
UniProt: G1KLR8
Position
4:complement(143553965..143590394)
AA seq 635 aa
MNASGPGYPLASLYVGDLHPDVTEAMLYEKFSPAGPIMSIRVCRDVATRRSLGYAYINFQ
QPADAERALDTMNFEVIKGRPIRIMWSQRDPGLRKSGVGNIFIKNLDDSIDNKALYDTFS
AFGNILSCKVVCDENGSRGYGFVHFETHEAANRAIATMNGMLLNDRKVFVGNFKSRRERE
AEYGAKAMEFTNVYIKNFGEEMSNERLQETFSIFGKTLSVKVMTDNIGRSKGFGFVNFEK
HQDAQKAVEDMNGKEINGRMLYVGRAQKRMERQSELKRKFEQIKQERVSRYQGVNLYVKN
LDDGIDDERLRKEFSPYGTITSAKVMTEGGHSKGFGFVCFSSPEEATKAVTEMNGRIVST
KPLYVALAQRKEERKAILTNQYMQRLATLRTLPGPLFCSFQPPPGYFVPSIPQPQPRTPY
YNASPVAPVRPAPRWNGQHSRPPSSYHTATPVLRTNAPPRRILNNISTMRQASTQVPRVP
PNAQRMANIGTQTVSVRAPSPPTFSRGISQYKYSSAVRNIQPLNAMPPIPMQQVVEPAVH
IHGQEPLTASMLAAAPPQEQKQILGERLYPLIHAMHPFLAGKITGMLLEIDNSELLLMLE
SPESLHSKIEEAVAVLQVHQMSESSHKSASTAFLQ
NT seq 1908 nt   +upstreamnt  +downstreamnt
atgaatgctagtggcccaggatatccattagcctctctctatgtgggggacttgcatccg
gacgtgactgaagctatgttgtatgagaaattctcacctgctggaccaatcatgtccatc
agagtttgtcgagatgttgctacacgtcgatctctaggttatgcttatataaattttcag
cagcctgctgatgctgagcgggccttggataccatgaattttgaagtcataaaaggtcgg
cccattcgcatcatgtggtcccagcgagacccaggactcaggaaatcaggcgttggcaac
atcttcattaagaatctggatgattctattgataacaaagccttgtatgatactttctca
gcctttgggaatattctctcttgcaaggttgtttgtgatgagaatggatcccgaggttat
ggctttgtccattttgagactcatgaggcagcaaacagagcaattgccacaatgaatgga
atgttactcaatgatcgcaaggtttttgttggtaattttaaatcccgacgtgagcgtgaa
gctgaatatggagccaaggcaatggaattcacaaatgtttacatcaagaactttggagaa
gagatgagcaatgagaggctgcaggaaacattctcgatatttggaaagacactgagtgtc
aaagtcatgacagataacataggccgttcaaaagggtttgggtttgtcaactttgagaaa
catcaggatgctcagaaggctgttgaagacatgaatgggaaggagatcaatggccgaatg
ttgtatgttggaagagctcagaagaggatggaacgtcagagtgagctgaaacgtaaattt
gagcaaatcaagcaggaaagagtgagcagataccagggggttaacctgtatgtaaagaac
ctggatgatgggattgatgatgagcgactgaggaaagaattctctccctatggaaccatc
accagtgccaaggtgatgacagagggtggacacagcaaaggttttgggtttgtatgtttt
tcctcacctgaagaggccacaaaggcagtgactgaaatgaacgggaggattgtcagcacc
aagcctttgtatgttgccctagcccaaaggaaagaggaaagaaaagccattctgaccaac
caatacatgcagagactggctactctcagaaccttgcctggcccactcttctgctccttc
caacctcctccgggttacttcgtgccttccattccacagccacaacctagaactccttac
tacaatgcaagcccagttgccccagtccgtcctgctccccgttggaatggacagcactcc
cggcctccttcgtcctatcacacagccacaccagtcctgaggaccaacgcacctcctaga
cgtatcctgaataacatcagcactatgagacaagcatcgactcaagtccccagagtgcca
cccaacgcccagagaatggccaacataggaacccagactgtcagtgttcgggcaccctcc
ccaccaaccttctcacgtggaatctcacagtacaagtattcttcagcagtgaggaacatc
caaccattgaatgcaatgccacccataccaatgcagcaggttgtagaaccagcagttcat
attcatggccaagagccattgacggcatccatgttggctgcagcccctcctcaagagcaa
aagcaaatacttggtgaacgtctctaccccttaattcatgcgatgcacccattcttggct
ggaaagattacaggaatgctgttggagattgataactcggagcttttgcttatgctggag
tcaccagaatccctccattctaagattgaagaagcagttgctgtactacaagttcatcag
atgtctgaatcatcacacaagagtgcatcaacagcattcctccagtga

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