KEGG   Actinomyces sp. Chiba101: CHIBA101_0259
Entry
CHIBA101_0259     CDS       T05279                                 
Name
(GenBank) DNA topoisomerase
  KO
K03168  DNA topoisomerase I [EC:5.6.2.1]
Organism
actc  Actinomyces sp. Chiba101
Brite
KEGG Orthology (KO) [BR:actc00001]
 09180 Brite Hierarchies
  09182 Protein families: genetic information processing
   03032 DNA replication proteins [BR:actc03032]
    CHIBA101_0259
   03400 DNA repair and recombination proteins [BR:actc03400]
    CHIBA101_0259
Enzymes [BR:actc01000]
 5. Isomerases
  5.6  Isomerases altering macromolecular conformation
   5.6.2  Enzymes altering nucleic acid conformation
    5.6.2.1  DNA topoisomerase
     CHIBA101_0259
DNA replication proteins [BR:actc03032]
 Prokaryotic type
  DNA Topoisomerases
   CHIBA101_0259
DNA repair and recombination proteins [BR:actc03400]
 Prokaryotic type
  DSBR (double strand breaks repair)
   NHEJ (non-homologous end-joining)
    SHIIR (short-homology-independent illegitimate recombination)
     Facilitator
      CHIBA101_0259
SSDB
Motif
Pfam: Topoisom_bac Toprim_C_rpt Toprim Toprim_4 Toprim_2
Other DBs
NCBI-ProteinID: BAW92132
UniProt: A0A1Q2TKQ3
Position
304648..307605
AA seq 985 aa
MPRKLVIVESPNKVRSIAGYLGPDFDVEASVGHIRDLAQPSELPAKEKKGPYGRFAVDVE
DGFKPYYVVNPDKKKTVTALKKALKEADELYLATDDDREGEAIAWHLLEVLKPKVPVKRM
TFTEITKEAVTRALDSTRDIDSHRVDAQETRRILDRLVGYEVSPVLWRKVRAGLSAGRVQ
SVATRLVVERERERMAFVPAGYWGVEAALTTGLSGLDAAARAEGSFTARLSALDGRRVAT
GRDFTDGGELTESARKAGTVHLHEGAAKAIAEAVMRAVPRVAEVEDKPYRRRPAAPFTTS
TLQQEASRKLRMNPRETMRVAQGLYENGFITYMRTDSTVLSGQAVAAARAQVAELYGPEY
VPAKARVYATKTKGAQEAHEAIRPAGDHFRTPAQVSGELSGAQFRLYELIWKRTVASQMA
DAVGSTATVRVEVPLAPADGGSRDSGQTFSTASFTASGTVITFRGFLAAYEEGRDAERYS
EAAAGSVGGAGESGSAGAGGAGGGAGAGGGSASSRETRLPAMIAGQELAALGAEAAGHET
TPPPRYTEASLVKALEEREIGRPSTYAATMSTISDRGYVDHRGQALVPTWLAFAVTRLLE
ENFAELVDYDFTASMEADLDRIAAGEADRVAWLTRFYFGADGTGSSDAAGAARAAGAAQG
SGSTGGVGQDGERSLRAMLDTLGEIDARAINSVPIGEGMTLRVGRYGPYLESEDGKRANV
PADLAPDELTVERARELFARAADDGRELGVDPSTGHTIIAKDGRYGPYVTEVLPAPEGGA
DEEATASGAKRKRTTKKAAGPKPRTASLLKSMDLSTVTLEQALDLLSLPRVVGQDAEGVD
ITAQNGRFGPYLKKGTDSRSLASEEQIFTVTLEEALALFAQPKTRRGQAAARGPLRELGT
DPTTGKPVVIKDGRFGPYFTDGETNVTLRRGDDPATVTPERAYELLAEKRAKGPTKKRTT
RKTAAKKTTAKKTPSKKTAAKNTDS
NT seq 2958 nt   +upstreamnt  +downstreamnt
gtgccccgcaagctcgtcatcgtcgagtccccgaacaaggtccgctcgatcgccggatac
ctgggccccgatttcgatgtcgaggcctccgtgggccatatccgcgacctcgcccagccc
tccgagctcccggccaaggagaagaagggcccctacgggcgcttcgccgtcgacgtcgag
gacgggttcaagccgtactacgtcgtcaacccggacaagaagaagaccgtcactgcgctt
aagaaggccctcaaggaggccgacgagctctacctggccaccgatgacgaccgcgagggc
gaggccatcgcctggcacctcctggaggtcctcaagcccaaggtgccggtcaagcggatg
accttcaccgagatcaccaaggaggccgtcacccgcgccctggactccacgcgggacatc
gactcccatcgcgtggacgcccaggagacccgccgcatcctcgaccggctcgtcggctac
gaggtcagccccgtcctgtggcgcaaggtccgcgcgggcctgtccgccgggcgcgtgcag
tccgtggccacccgcctcgtggtggagcgcgagcgcgagcgcatggccttcgtgcccgcc
ggctactggggcgtcgaggccgcgctcaccacgggcctgagcggcctcgacgcggccgcc
cgcgccgagggctctttcacggcccggctgtccgccctcgatggacgccgcgtggccacc
gggcgcgacttcaccgatggcggcgagctgacggagtcggcccgcaaggcgggcaccgtc
cacctccacgagggcgcggccaaagcgatcgccgaggccgtcatgcgcgccgtcccgcgc
gtggccgaggtggaggacaagccctacaggcggcgcccggccgcccccttcaccacctcc
accctccagcaggaggcctcccgcaagctccgcatgaacccgcgcgagaccatgcgcgtg
gcccagggcctgtacgagaacggcttcatcacctacatgcgcaccgactccacggtgctc
tccggccaggccgtggccgccgcccgcgcgcaggtcgccgagctctacgggcccgagtac
gtgcccgccaaggctcgcgtctacgccacgaagaccaagggcgctcaggaggcccacgag
gccatccggcccgccggcgaccacttccgcacccccgcgcaggtcagcggtgagctcagc
ggcgcgcagttccggctctacgagctcatctggaagcggaccgtcgcctcccagatggcc
gacgccgtcggctccaccgcgaccgtccgagtggaggtgcccctggcgcccgccgatggc
ggctcgcgcgactccgggcagaccttctccaccgcgtccttcaccgcctcgggcaccgtc
atcaccttccgcggcttcctggccgcctacgaggaggggcgcgacgccgagcgctactcc
gaggccgccgcgggcagtgtcggtggggccggcgagtccggcagcgccggggcgggcggc
gcgggcggcggtgctggcgccggtggcgggagcgcgtcgtcgcgcgagacgcgcctgccc
gccatgatcgccgggcaggagctcgcggccctcggcgccgaggccgccgggcacgagacc
accccgccgccgcgctacaccgaggcgtccctggtcaaggcactggaggagcgcgagatc
ggccgcccctccacctacgccgccacgatgtccaccatctccgatcgcggctacgtggac
caccggggccaggccctcgtgcccacctggctggccttcgccgtcacgcgcctgctggag
gagaacttcgccgagctggtggactacgacttcaccgcctccatggaggccgacctcgac
cgcatcgccgccggggaggcggaccgggtcgcctggctgacccgcttctacttcggggcc
gacgggacgggctcatctgatgccgccggggccgcgagggccgccggggccgcgcaaggc
tcggggagcactgggggagtgggccaggatggcgagcgcagcctgcgcgccatgctcgac
acgctcggcgagatcgacgccagggccatcaactccgtgccgatcggcgagggcatgacc
ctgcgcgtgggccgctacggcccctacctggagtccgaggacggcaagcgcgccaacgtg
cccgccgacctcgccccggatgagctgaccgtcgagcgcgcccgtgagctcttcgcccgc
gccgccgacgacggtcgtgaactcggcgtcgacccatccaccggccatacgatcatcgcc
aaggacgggcgctacgggccctacgtcaccgaggtgctgcccgccccggagggcggggcc
gatgaggaggcgacggcgtcgggagcgaagaggaagcggaccacgaagaaggccgccggg
cccaagccgcgcacggcgagcctgctgaagtccatggacctgtccaccgtcaccctggag
caggcgctcgacctgctcagcctgccgcgcgtggtgggccaggacgccgagggcgtggac
atcaccgcgcagaacgggcgcttcgggccctacctgaagaaggggacggactcgcgctcc
ctggcctccgaggagcagatcttcacggtgaccctggaggaggcgctcgcgctcttcgcc
cagcccaagacccgccgcggccaggccgccgcgcgcgggcccctgcgcgagctcggcacg
gatccgaccaccggcaagcccgtggtcatcaaggacgggcgcttcggcccctacttcacc
gacggcgagacgaatgtgacgctgcgccgcggtgacgacccggccaccgtcacccccgag
cgcgcctacgagctcctcgccgagaagcgcgccaagggcccgaccaagaagcgcaccacc
cgcaagaccgccgccaagaagacgactgccaagaagactccctccaagaagaccgccgcg
aagaataccgactcataa

  All links  
Ontology (4)   
   KEGG BRITE (4)   
Chemical reaction (1)   
   KEGG ENZYME (1)   
Genome (1)   
   KEGG GENOME (1)   
Gene (3)   
   KEGG ORTHOLOGY (1)   
   NCBI-PROTEINID (1)   
   OC (1)   
Protein sequence (1)   
   UniProt (1)   
Protein domain (5)   
   Pfam (5)   
All databases (15)   

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