KEGG   Acinetobacter sp. DUT-2: A0J50_09370
Entry
A0J50_09370       CDS       T04353                                 
Name
(GenBank) transcription-repair coupling factor
  KO
K03723  transcription-repair coupling factor (superfamily II helicase) [EC:5.6.2.4]
Organism
acw  Acinetobacter sp. DUT-2
Pathway
acw03420  Nucleotide excision repair
Brite
KEGG Orthology (KO) [BR:acw00001]
 09120 Genetic Information Processing
  09124 Replication and repair
   03420 Nucleotide excision repair
    A0J50_09370
 09180 Brite Hierarchies
  09182 Protein families: genetic information processing
   03400 DNA repair and recombination proteins [BR:acw03400]
    A0J50_09370
Enzymes [BR:acw01000]
 5. Isomerases
  5.6  Isomerases altering macromolecular conformation
   5.6.2  Enzymes altering nucleic acid conformation
    5.6.2.4  DNA 3'-5' helicase
     A0J50_09370
DNA repair and recombination proteins [BR:acw03400]
 Prokaryotic type
  SSBR (single strand breaks repair)
   NER (nucleotide excision repair)
    TCR (transcription coupled repair) factors
     TRCF (transcription-repair coupling factor)
      A0J50_09370
SSDB
Motif
Pfam: TRCF DEAD UvrB_inter Helicase_C CarD_TRCF_RID MFD_D3 ResIII SNF2-rel_dom ERCC3_RAD25_C Glyco_tran_WecG RecG_dom3_C
Other DBs
NCBI-ProteinID: AMO40840
Position
complement(1999790..2003251)
AA seq 1153 aa
MFQQEISQLNLQQLKAGEKRWVGSLLGSSAALLFKEIAVQHSSLLVVVARNNQHVAQLES
ELEFYGIKPTIFPDWEILPYDRLSPHQDIVSERLAILSNMPQKGILLISASTLAQRVAPY
SWVLGEHFDIRVGQKFDLEQQKLRLVQAGYHLVDTVYDHGEFAVRGSIMDIFASGQDAPI
RIDLFDDEIDTLKFFDPETQRTTTTLKSFTVLPAKEFPLKEARSIFRDRYSELFPTANPK
KNPIYQDVLDGIASPGIEFYLPLFFDKTHMQSQSTLTTYFPKNCIVITNNDIDIDLTSFW
KEVFRRYEDRRHNADQPILPPDELFIAPNNLLSALNQFPRMLVSAEAVEEKAGALNLKVE
QPPKLPVDPKKDKPFAVVKKYIDEANHPVLLVAESAGRRESLRDGLRASLGDIPSVDSFE
QFQKSQFAIAITNAPLDRGLLLTDQLSVISENQLYEHRVVQRRRKRQQEVSEEFLIRSLT
ELSIGAPVVHIDHGVGRYAGLITLAIEGQDYEFLQLDYAEEAKVYVPVTNLHLISRYSGG
DPDLAPLHKIGTDAWSKAKRKALEQIHDVAAELLHIQARRQSKPGFGFEVDQSLYMQFAS
GFAYEETLDQANAIEATLYDMQQAKPMDRLVCGDVGFGKTEVAMRAAFVAVQNGKQVAVL
VPTTLLAQQHYESFKDRFADWPVRIEVLSRFGSNKTHTKNIEDLAEGKVDIVVGTHKLLQ
ENVQFKDLGLMVVDEEHRFGVRDKERIKALRADVDMLTLTATPIPRTLNMAFSGMRDLSI
IATPPARRLAVKTFVQEHTEASIKEAILRELLRGGQVYFLHNEVDTIERAAENIRVLVPE
ARVAVAHGQMRERELEQVMQQFYHKEYNVLVCSTIIETGIDVPNANTILIERADKLGLAQ
LHQLRGRVGRSHHQAYAYLLVPSIKHLKGDAEKRLDAIQRASTLGAGFMLATEDLEIRGA
GELLGEQQSGSMQAIGYSLYMEMLEKATKAIQQGKTPNFDAPLSLTAEINLHIPALIPDE
YLGDVHQRLLFYKRISNTDTQEKLDNIRMELIDRFGVPPQSVKHLFSVHQIRLKAEQLGI
TKIDINTQGGNIEFSPDTPVQAISIIQLMQKHPTYYRMEGGQRLKVMVQLEEQEKRIQFI
NDLLAKLLNELHA
NT seq 3462 nt   +upstreamnt  +downstreamnt
atgtttcaacaagaaatctctcaattgaatttacaacagctcaaagccggtgaaaagcgt
tgggtagggtcgttattaggttcttctgctgcattattattcaaagaaattgccgttcag
cattcatctttgctcgttgtagtagctcgaaataaccaacatgttgctcagttagaaagt
gaacttgaattttatggcataaaaccgacaattttccctgattgggaaattttgccgtat
gaccgcttgtcacctcatcaagatattgtttcagaacgactcgcgattttatccaatatg
ccgcaaaaaggtatattgctcatttcagcaagcactttagctcaaagagttgcaccatat
tcttgggttttaggtgagcattttgatatacgtgtggggcaaaaatttgatttagaacaa
cagaagctacgtttagtacaagctgggtatcatttagtagatacagtttacgaccatggt
gagtttgctgtacgtggcagcattatggatatttttgcatctggtcaggatgcacctatc
cgtattgacctgtttgatgatgaaattgatactttaaaattctttgatccagaaacacaa
agaaccaccacaactttaaaaagttttacagttcttcccgcgaaagagttcccattaaaa
gaagctcgttccattttcagagatcgttattctgaactttttccgactgcaaatcctaag
aaaaacccaatttaccaagatgttcttgatggaattgcatctccgggaattgagttttat
ttaccgttattttttgataaaactcacatgcaatctcaaagtacacttacaacgtacttt
ccaaagaattgcattgtaattacaaataatgatatagatattgatttaaccagtttttgg
aaagaagtttttcgtcgctatgaagatagacgccataacgcagaccagccaattctccct
cctgatgagttatttattgcaccaaataacttactaagtgctttaaatcagttcccgcgt
atgcttgtgagcgctgaagcagttgaagaaaaagctggggctctaaatcttaaggttgag
caaccacctaagttgccagttgatccgaaaaaagacaaaccatttgctgtagttaaaaaa
tatattgatgaagcaaatcatcctgttttattggttgcagaaagtgctggtcgacgtgaa
agtttaagagatggcttgcgtgccagtctgggagatattcctagcgtagatagttttgag
caattccagaaaagtcagtttgcgattgcgattacgaatgcaccattagaccgtggtttg
cttttaaccgatcaattgtctgttatttcagaaaatcagttgtatgagcatcgcgtagtt
caacgtcgtcgtaaacgtcagcaagaagtttcagaagaattcctaattcgtagtttgacc
gaattaagcataggtgctcctgttgttcatattgaccatggtgtagggcgttatgctgga
ttaattactttggcaattgaagggcaagattatgaattcttgcaactagactatgctgaa
gaggcaaaagtttacgtgcctgtgactaacttgcatctcattagtcgctatagtggcgga
gatccagatttagcaccattacataaaattggaactgacgcgtggagtaaggctaaacgt
aaagctttagaacaaattcatgatgttgcagcagagttgctacatatacaggcacgtcgt
cagtcaaaacctggttttggctttgaagtcgatcagtcgctttatatgcaatttgcaagc
ggatttgcgtatgaagaaacacttgatcaagccaatgctattgaagcgacgctttatgat
atgcaacaagctaaaccgatggatcgacttgtttgtggggacgttggttttggtaaaaca
gaagttgcaatgcgagcagcatttgttgcggtgcaaaatggtaagcaggtcgctgtttta
gtaccgacgacattacttgctcaacagcattatgaatcttttaaagaccgctttgccgac
tggcctgttcgtattgaagtattatcacgctttggttcaaataaaacgcatacgaaaaat
attgaagatcttgctgagggcaaagtcgatattgtggtgggtacccataaacttttacaa
gaaaatgtacagtttaaagatctagggttaatggtagtcgacgaagaacatcgttttggt
gtgcgtgataaagagcgtattaaagcattacgcgcagatgttgatatgttaacacttaca
gctacaccaattccacgaactttaaatatggctttttcgggaatgcgtgatttatctatc
attgctacaccgccagcccgtcgtttagctgttaaaacctttgtacaagaacataccgaa
gcgtctattaaagaagcgatcttgcgtgagttactacgtggtggccaagtatatttcttg
cacaatgaagttgatacgattgagagagcagctgaaaatattcgcgtgcttgttcctgaa
gctcgtgtagcagtggctcatgggcaaatgagggaaagagaacttgagcaagtcatgcaa
cagttctatcacaaagaatacaatgtattggtatgttcaacaattatcgaaactggaatt
gatgttccaaatgccaacactattttgatagaaagggctgacaaacttggtttagctcaa
ctacaccaattacgtggccgtgtggggcgttcacatcaccaagcttatgcttatttatta
gttccttcgataaagcatctaaaaggtgatgctgaaaaacgccttgatgcaatccaacgt
gcttcaactcttggtgctggtttcatgctggctacagaagatttagaaattcgaggcgca
ggtgagcttttaggtgagcagcaaagtggttcaatgcaagcaattggttatagtttgtat
atggaaatgcttgaaaaagctactaaggcgattcaacaagggaaaacaccgaattttgat
gcacctttatcattaacagcagaaattaatttacacattcctgcactgattccagatgag
tatttaggtgacgtacatcagcgtttattattctataagcgtattagtaatacagatacc
caagaaaagctcgacaatatacgtatggagctgattgaccgttttggggttccaccgcaa
tcagttaaacacttatttagtgttcaccaaattcgcctgaaagctgaacagttagggatt
actaaaatcgatattaatactcaaggcggcaatattgaattctcgcctgatacacctgtt
caggccatcagtattattcaactcatgcaaaagcatccaacctattatcgtatggaaggt
ggtcaacgtttaaaggttatggttcagcttgaggaacaggaaaaacgaatccaatttatt
aatgatttgttagcgaaattattgaatgaattacatgcttaa

  All links  
Ontology (3)   
   KEGG BRITE (3)   
Pathway (1)   
   KEGG PATHWAY (1)   
Chemical reaction (1)   
   KEGG ENZYME (1)   
Genome (1)   
   KEGG GENOME (1)   
Gene (3)   
   KEGG ORTHOLOGY (1)   
   NCBI-PROTEINID (1)   
   OC (1)   
Protein domain (11)   
   Pfam (11)   
All databases (20)   

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