KEGG   Anaeromyxobacter dehalogenans 2CP-C: Adeh_4332
Entry
Adeh_4332         CDS       T00326                                 
Name
(GenBank) transcription-repair coupling factor
  KO
K03723  transcription-repair coupling factor (superfamily II helicase) [EC:5.6.2.4]
Organism
ade  Anaeromyxobacter dehalogenans 2CP-C
Pathway
ade03420  Nucleotide excision repair
Brite
KEGG Orthology (KO) [BR:ade00001]
 09120 Genetic Information Processing
  09124 Replication and repair
   03420 Nucleotide excision repair
    Adeh_4332
 09180 Brite Hierarchies
  09182 Protein families: genetic information processing
   03400 DNA repair and recombination proteins [BR:ade03400]
    Adeh_4332
Enzymes [BR:ade01000]
 5. Isomerases
  5.6  Isomerases altering macromolecular conformation
   5.6.2  Enzymes altering nucleic acid conformation
    5.6.2.4  DNA 3'-5' helicase
     Adeh_4332
DNA repair and recombination proteins [BR:ade03400]
 Prokaryotic type
  SSBR (single strand breaks repair)
   NER (nucleotide excision repair)
    TCR (transcription coupled repair) factors
     TRCF (transcription-repair coupling factor)
      Adeh_4332
SSDB
Motif
Pfam: TRCF DEAD UvrB_inter Helicase_C CarD_TRCF_RID ResIII AAA_22 RecG_dom3_C SNF2-rel_dom UB2H AroM
Other DBs
NCBI-ProteinID: ABC84095
UniProt: Q2IHN6
Position
4982740..4986465
AA seq 1241 aa
MPPAPSPAMTAATGETPGASARDRVRRALEEKRRADVTGLVGAARGLLVRDLLAPGPGRA
RSVLAVAADEEEADALARDLAFFLGEGAVLRVPADAVLPYDDLSPDRGVEMERLAALARL
HLAPEQAKAVVVSARALARRTVPRRVFEAGSDLLGKGIEVDREALAAKLVLLGFARTPLV
EDPGTFAVRGGIVDLWSPADPRPVRLEFFGDEIESCRAFDPSNQRSEGDVEEVLLCPSRE
ALFTEEGKEAAKTAVREVAERVNRPTSRVREVLDAIDAGTPFFGLEALLPGFHPGGLGTL
FDYLPPGTAVYVDGVAAVEDALAELDEALAREHAAALDREELVLPPAAHFLPGAEARARA
LALPTVVRHQVWLGTEEPIRVALEETAGIRAEIEGAHGEEGALAPLTRRLEDWRKRGIAA
VVAAGTASASERLRRLLEDRRQHSRVHTGPPGAPRELYDPAVHVHVFAGEISAGFVDAAA
GLAVVSDEEIFGRRVRKKARRAAEENAFAAAFRELNEGDLVVHVEHGIAKYLGLTKMQIR
GVEGDFLVLAYDGADRLYLPVAKLRQVQKFTGASPETIRLDRLGGSSFALRKARVKEQLL
KMAAELLDIYAARAAHPGFAYPEPDELFREFEAEFPWEETPDQAKAIEDVVRDMRKGRQG
PAAAAPMDRLVCGDVGYGKTEVAMRAAMLAVLAKKQVAVLVPTTVLAAQHERTFRERFKG
YPVRIEAVSRMRTADEVKRALKAAADGKVDILVGTHRLLAADVSFKDLGLVVVDEEQRFG
VAHKERLKKLRKLVDVLTLTATPIPRTLHMSLAGVRDLSIIATPPEDRRAIRTFVMKFDP
AAVKEAIETELKRGGQVFFVHNRVRSIHAMQRFLGELVPKARVGVAHGQMGEGKLEHVMT
QFVDKELDVLLATSIIESGLDIPSANTIIVNRADHFGLAQLYQIRGRVGRSRERAYAYLL
VPARRPVTKDAQKRLEVLQRFSELGAGFKIASHDLEIRGAGNLLGKDQSGQIEAVGFELY
QELLDEAVRELKGEAPREEIDPDVQLPVPAFIPDPYMPDVHQRLFFYKRLAQASTDEDLD
EVRAEMVDRCGDPPDEVDALFEVMAVKVRLRALRIRALETGPGRLVLTLGESAALDPFQL
AKHVQASAGALRLTPDMKLVAQLGGPPAPKAVAARPAKGAAARQSPRQAAAQRRVAADAA
RRAQPPPAAAPSPAMQAASGRELLQAVREVLAGLARCARAE
NT seq 3726 nt   +upstreamnt  +downstreamnt
atgccgcccgctccgagccccgccatgaccgcagcaacaggagagaccccgggcgcgagc
gcgcgcgatcgcgtgcgccgcgccctcgaggagaagcgccgcgccgacgtcaccggcctc
gtgggggccgcgcgcggcctcctggtccgcgacctgctcgcccccggcccgggccgcgcc
cgctcggtgctggcggtggcggcggacgaggaggaggcggacgcgctcgcccgcgacctc
gccttcttcctgggcgagggcgcggtgctccgcgtccccgccgacgcggtgctcccctac
gacgacctctcgcccgaccgcggcgtggagatggagcggctcgccgcgctggcgcgcctg
cacctcgcccccgagcaggcgaaggcggtggtggtctcggcccgcgcgctggcgcgccgc
accgtgccacggcgggtgttcgaggccggctcggacctgctcggcaagggcatcgaggtg
gaccgcgaggcgctcgccgcgaagctcgtgctgctcggcttcgcccgcacgccgctcgtc
gaggacccgggcacgttcgcggtccgcggcggcatcgtggacctttggagcccggccgac
ccgaggccggtgcggctcgagttcttcggcgacgagatcgagagctgccgcgcgttcgac
ccgtccaaccagcgcagcgagggcgacgtggaggaggtgctgctctgcccctcgcgcgag
gcgctcttcaccgaggagggcaaggaggccgccaagaccgcggtgcgcgaggtcgccgag
cgggtgaaccgccccacctcgcgggtgcgcgaggtgctcgacgccatcgacgccggcacg
ccgttcttcgggctggaggcgctgctccccggcttccacccggggggcctcggcacgctg
ttcgactacctgccgcccgggaccgcggtctacgtggacggggtcgcggcggtggaggac
gcgctcgccgagctcgacgaggcgctcgcccgcgagcacgccgccgcgctggaccgcgag
gagctggtgctgccgcccgcggcgcacttcctccccggcgccgaggcgcgcgcccgcgcg
ctggcgctgccgacggtggtccggcaccaggtgtggctcggcaccgaggagcccatccgc
gtcgcgctcgaggagaccgccggcatccgcgccgagatcgagggcgcgcacggcgaggag
ggcgcgctcgccccgctcacccggcggctcgaggactggcgcaagcgcggcatcgcggcg
gtggtggcggccgggaccgcgtcggcgtccgagcgcctccgccgcctgctcgaggaccgg
cgccagcactcgcgcgtccataccggcccgcccggcgcgccgcgggagctctacgacccg
gcggtgcacgtgcacgtcttcgccggcgagatctcggccggcttcgtggacgcggccgcg
ggcctggcggtggtctccgacgaggagatcttcggccgccgcgtgcgcaagaaggcgcgc
cgcgccgccgaggagaacgcgttcgcggcggcgttccgcgagctgaacgagggcgacctg
gtcgtgcacgtcgagcacggcatcgccaagtacctgggcctcaccaagatgcagatccgc
ggggtggagggcgacttcctcgtcctcgcctacgacggcgccgaccggctctacctgccg
gtcgcgaagctgcgccaggtgcagaagttcaccggcgcctcgcccgagacgatccggctc
gacaggctgggcggcagctccttcgcgctccgcaaggcgcgggtgaaggagcagctcctc
aagatggccgccgagctgctcgacatctacgcggcccgcgccgcccaccccggcttcgcc
tacccggagccggacgagctgttccgcgagttcgaggcggagttcccctgggaggagacg
cccgaccaggcgaaggccatcgaggacgtggtccgcgacatgcgcaagggccgccagggc
ccggccgcggccgcgcccatggaccggctggtctgcggcgacgtgggctacggcaagacc
gaggtggcgatgcgcgccgccatgctggcggtgctcgcgaagaagcaggtggcggtgctc
gtgcccaccaccgtgctcgcggcccagcacgagcgcacgttccgcgagcggttcaagggc
tacccggtgcgcatcgaggcggtctcgcgcatgcgcaccgccgacgaggtgaagcgggcg
ctgaaggccgccgccgacggcaaggtggacatcctcgtcggcacgcaccggctgctcgcg
gccgacgtgtcgttcaaggacctgggcctggtggtggtggacgaggagcagcgcttcggc
gtcgcgcacaaggagcgcctgaagaagctgcgcaagctcgtggacgtgctcacgctcacc
gccacgcccatcccccgcaccttgcacatgagcctcgccggcgtgcgcgacctctccatc
atcgcgacgccgccggaggaccgccgggccatccgcaccttcgtgatgaagttcgacccg
gccgcggtgaaggaggccatcgagaccgagctgaagcgcggcgggcaggtgttcttcgtc
cacaaccgcgtgcgctcgatccacgccatgcagcgcttcctcggcgagctcgtgccgaag
gcgcgggtgggcgtcgcgcacgggcagatgggcgaggggaagctcgagcacgtcatgacg
cagttcgtggacaaggagctcgacgtgctcctcgccacgagcatcatcgagtccggcctc
gacatccccagcgcgaacaccatcatcgtgaaccgcgccgaccacttcggcctggcgcag
ctctaccagatccgcggccgcgtcggccgaagccgggagcgcgcttacgcgtacctgctc
gtgccggcgcgccgcccggtcacgaaggacgcgcagaagcggctcgaggtgctccagcgg
ttcagcgagctgggcgccggcttcaagatcgcgagccacgacctcgagatccgcggcgcg
ggcaacctgctcggcaaggaccagtccggccagatcgaggcggtggggttcgagctgtac
caggagctgctcgacgaggcggtgcgcgagctgaagggcgaggcgccgcgcgaggagatc
gacccggacgtgcagctgccggtgccggcgttcatccccgacccgtacatgcccgacgtc
caccagcggctgttcttctacaagcggctcgcgcaggcctccaccgacgaggacctcgac
gaggtccgggccgagatggtggaccgctgcggcgacccgccggacgaggtggacgcgctg
ttcgaggtcatggcggtgaaggtccggctgcgcgcgctgcgcatccgcgcgctcgagacc
gggccggggcggctcgtcctcacgctgggcgagtcggccgcgctcgacccgttccagctc
gcgaagcacgtgcaggcctcggccggcgcgctccggctcaccccggacatgaagctggtg
gcgcagctcggcgggccgccggcgccgaaggccgtcgcggcgcgcccggcgaagggcgcc
gcggcgcggcagagcccgcggcaggctgcggcacagcgccgcgtggccgccgacgccgcc
cgccgcgcccagccgccgccggccgcggcgccctcgccggcgatgcaggccgcgagcggc
cgcgagctgctgcaggcggtgcgcgaggtgctcgccggcctggcgcgctgcgcgcgcgcg
gagtga

  All links  
Ontology (3)   
   KEGG BRITE (3)   
Pathway (1)   
   KEGG PATHWAY (1)   
Chemical reaction (1)   
   KEGG ENZYME (1)   
Genome (1)   
   KEGG GENOME (1)   
Gene (38)   
   KEGG ORTHOLOGY (1)   
   RefGene (35)   
   NCBI-PROTEINID (1)   
   OC (1)   
Protein sequence (1)   
   UniProt (1)   
Protein domain (11)   
   Pfam (11)   
All databases (56)   

Download RDF
DBGET integrated database retrieval system