KEGG   Alloalcanivorax dieselolei: B5T_03250
Entry
B5T_03250         CDS       T02259                                 
Symbol
recQ1
Name
(GenBank) ATP-dependent DNA helicase RecQ
  KO
K03654  ATP-dependent DNA helicase RecQ [EC:5.6.2.4]
Organism
adi  Alloalcanivorax dieselolei
Pathway
adi03018  RNA degradation
Brite
KEGG Orthology (KO) [BR:adi00001]
 09120 Genetic Information Processing
  09123 Folding, sorting and degradation
   03018 RNA degradation
    B5T_03250 (recQ1)
 09180 Brite Hierarchies
  09182 Protein families: genetic information processing
   03019 Messenger RNA biogenesis [BR:adi03019]
    B5T_03250 (recQ1)
   03400 DNA repair and recombination proteins [BR:adi03400]
    B5T_03250 (recQ1)
Enzymes [BR:adi01000]
 5. Isomerases
  5.6  Isomerases altering macromolecular conformation
   5.6.2  Enzymes altering nucleic acid conformation
    5.6.2.4  DNA 3'-5' helicase
     B5T_03250 (recQ1)
Messenger RNA biogenesis [BR:adi03019]
 Prokaryotic type
  Bacterial mRNA degradation factors
   RNA degradosome components
    Helicases
     B5T_03250 (recQ1)
DNA repair and recombination proteins [BR:adi03400]
 Prokaryotic type
  DSBR (double strand breaks repair)
   NHEJ (non-homologous end-joining)
    SHDIR (short-homology-dependent illegitimate recombination)
     Supressor
      B5T_03250 (recQ1)
SSDB
Motif
Pfam: RQC DEAD RecQ_Zn_bind HRDC Helicase_C ResIII
Other DBs
NCBI-ProteinID: AFT71517
UniProt: K0CIE5
Position
3621846..3623645
AA seq 599 aa
MQRDPLSILQHVFGYHEFRNQQAAIIDTLVSGGDALVLMPTGGGKSLCYQIPALAREGVG
VVVSPLIALMQDQVDALNALGVSAGFLNSTLDAGRARELEQQVRDGTLDLLYVAPERLTQ
ARTLELLHQSPLALFAIDEAHCVSQWGHDFRSDYLQLSLLHREFPQVPRIALTATADPRT
RQEIAERLDLGGARHFVSSFDRPNIQYRIERKDSARQQLLRLIRNEHAGDAGIVYCLSRN
KVDQTADWLNQQGIAALPYHAGLGGEMRARHQQRFLREDGLVMVATVAFGMGIDKPDVRF
VAHLDLPKSIEAYYQETGRAGRDGAPATAWMAYGLEDAIRHKQMLAQSEGNEQFKRHEHQ
RLEAMLGLCEVTQCRRQALLNYFGETLEQPCGNCDTCLNPPQTFDATEVARKALSCVYRT
GQRFGVNHLVDVLTGNRSDKVASAGHDHVSTWNIGGELSANQWRAIYRQLVALGLLAVDA
AGYGALQLTETCRPYLRGERSLQLRKDVARAQTRSRRAERVPVTDAERPLWEALRACRKQ
LAEEAGVPPYVIFHDATLLDMMAIHPTSLRDIASVSGVGDRKLEAYGDAFLEVFHRYAS
NT seq 1800 nt   +upstreamnt  +downstreamnt
atgcaacgcgatcccctttcgattctccagcacgtattcggctaccacgagttccgtaac
cagcaggccgccattatcgacaccctggtcagcggtggcgatgccctggtattgatgccc
accggcggcggcaaatccctgtgttaccagatccccgccctggcgcgggaaggcgtcggc
gtggtggtcagcccattgatcgcgctgatgcaggatcaagtggacgcgctcaatgctctc
ggggtcagcgccggtttcctcaattccactctggacgccggccgcgcccgggaactggaa
caacaggtccgcgacggcactctcgacctgctctacgtggcgccggaacggctgacccag
gcacgcactctggaactgctgcaccagtcgccgctggcgttgttcgccatcgacgaggcg
cattgcgtgtcgcagtggggccatgatttccgcagcgactatctgcaactgtccctgctg
caccgggagttcccccaggtgccacgcatcgcgctcaccgccaccgccgatccgcgcact
cgccaggaaatcgccgagcggctcgatctcggtggtgcccgccacttcgtttccagcttc
gaccggcccaatatccagtaccggatcgaacgcaaggacagcgcccgccagcagttgcta
aggctgatccgcaacgaacacgccggcgacgccggcatcgtttattgcctgtcccgcaat
aaagtggaccagaccgccgactggctcaaccagcagggcattgccgccctgccctaccac
gccggtctcggcggcgagatgcgcgctcgccaccagcagcgtttcctgcgcgaggatggc
ctggtgatggtggccacggtggcgttcggcatgggcatcgacaaaccggacgtgcgtttc
gtcgcccacctggatctgcccaaaagcattgaggcctattaccaggaaaccggccgcgcc
ggccgtgatggcgcccccgccaccgcctggatggcctatggcctggaagacgccatccgt
cacaagcagatgctggcgcaatcggaaggcaacgaacagttcaagcgtcacgagcatcag
cggctggaggccatgctcggtctctgtgaagtgacccagtgccggcgccaggcgctgctg
aattattttggcgaaaccctggagcaaccctgcggcaactgcgatacctgcctgaatccg
ccgcagacattcgacgccaccgaggtggcgcgcaaggcgctcagctgcgtttaccgcacc
ggccagcgcttcggcgtcaaccatctggtcgatgtgctcaccggcaatcgcagcgacaag
gtggcctccgccggccacgaccatgtctccacctggaacatcggcggcgagctttccgcc
aatcagtggcgggccatttaccggcaactggtggcactgggcctgctcgccgtggatgcc
gccggctatggcgcgctgcaactcaccgagacctgccgtccgtatttacgcggtgaacga
tcgctgcaactgcgcaaggacgtggcccgtgcccagacccgctcccgccgtgccgagcgg
gttccggtgacggacgccgagcgcccgctttgggaagccctgcgcgcctgccgcaagcaa
ctggccgaagaagccggcgtgccgccctatgtgatcttccacgacgccaccctgctcgac
atgatggcgattcacccgacctctctgcgcgacatagccagtgtcagcggggtcggcgac
cgcaagctggaagcctacggcgacgctttcctggaagtgttccaccgctacgcctcgtga

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Ontology (4)   
   KEGG BRITE (4)   
Pathway (1)   
   KEGG PATHWAY (1)   
Chemical reaction (1)   
   KEGG ENZYME (1)   
Genome (1)   
   KEGG GENOME (1)   
Gene (3)   
   KEGG ORTHOLOGY (1)   
   NCBI-PROTEINID (1)   
   OC (1)   
Protein sequence (1)   
   UniProt (1)   
Protein domain (6)   
   Pfam (6)   
All databases (17)   

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