KEGG   Auricularia subglabra: AURDEDRAFT_183647
Entry
AURDEDRAFT_183647 CDS       T03129                                 
Name
(GenBank) ATP-dependent DNA ligase
  KO
K10777  DNA ligase 4 [EC:6.5.1.1]
Organism
adl  Auricularia subglabra
Pathway
adl03450  Non-homologous end-joining
Brite
KEGG Orthology (KO) [BR:adl00001]
 09120 Genetic Information Processing
  09124 Replication and repair
   03450 Non-homologous end-joining
    AURDEDRAFT_183647
 09180 Brite Hierarchies
  09182 Protein families: genetic information processing
   03400 DNA repair and recombination proteins [BR:adl03400]
    AURDEDRAFT_183647
Enzymes [BR:adl01000]
 6. Ligases
  6.5  Forming phosphoric-ester bonds
   6.5.1  Ligases that form phosphoric-ester bonds (only sub-subclass identified to date)
    6.5.1.1  DNA ligase (ATP)
     AURDEDRAFT_183647
DNA repair and recombination proteins [BR:adl03400]
 Eukaryotic type
  DSBR (double strand breaks repair)
   NHEJ (non-homologous end-joining)
    DNA Ligase 4 complex
     AURDEDRAFT_183647
SSDB
Motif
Pfam: DNA_ligase_A_M DNA_ligase_A_N BRCT_2 BRCT RNA_ligase DNA_ligase_A_C PTCB-BRCT Solute_trans_a SKA1
Other DBs
NCBI-ProteinID: EJD47877
JGI: 183647
AA seq 1038 aa
MPLPTPAPSSPGTLAGDDELQNDGQEVVIEAPENAGTYPEFGALCALLDRLQKERRQEMR
RTLLQKWFALWRERVGPDLYPLLRLLLPQKDRERAVYNIKEKTLAKAFIKALGLDPKAPD
SMRLMNWKKPTEKGKTAGDFPTVLYEVVSKRSSVMRGTMRVDQVNACLDDLAACAGKLDK
IMHAVRRISDATTPSEQRWIVRIILKDLIISVKETTILSVFHPDALSLFNTCSDLKRVAH
QLWDENCRLNDQDKGVQLFRCFAPMLCKRPTKSLEETVALMKGAKFIIEEKLDGERIQVH
KRGNEYLYYSRKGKDYTYLYGKTVSSEKASLTPYLHKAFRGDVRDCILDGEMLVWDPVSE
KLMPFGHLKTAALGNARELTNPRPCFKIFDILYVNGKSLLDKKLSQRKRLAHEIIKENKG
RVEFSYQDEGHTAKEIRDALQKVMEERGEGLVIKHPDSQYQLNGRVSDWIKVKPEYMDDM
GETVDVLVVGGNYGSGKRGGGVSTFVCAVIEDRDNSEDDTKYSTFVRIGSGFTYGDYLSI
RAKPWKPWGKKGPSWLITAPTGQDDKADVYLDPEESFVVKVKAAEITKTDQYGMKLTMRF
PRAVRIRDDLDWTQCMTASDILEMTASTSKKRKAEDDPEGSKKKRKTVKKPSALSQAFKG
ADTTNILVTSDIFAGMKFHVLDNPRVVDQKKSLETLIKQHGGAFCQKPLAREVTSVFRVF
GGSDQKPPLRVANIINEDSSDILRPSYIFDSVERNERLPLSKKYFFHRAGGKSRTEEEEA
EYQQDDEAAQASDDAMDASASVDLRNSVHPVKRESVEPELDPSLSQYSEWVSVSDGEKAK
QTRHKNDPADESETEDESSWEAADDDEQTDEWEMLSSGRLNESIVNREATLEGDDVQFTP
TVKQAAILPLAEKVAAKMGEDDSAMEYDPDIIFKHLCFYLDTPANARRNGMDVSSNLEAQ
ITDDLDEIQKMIEDNGGKIVDLTDPKLTHVIVDKRDYTRMRELRKRTSKPKQRQLVQSDF
IRAAVDAETLPDEDGFRP
NT seq 3117 nt   +upstreamnt  +downstreamnt
atgcccctacccacgccggcgccgtcctcgccgggcacactcgcgggagacgatgagctg
cagaatgacgggcaggaagtcgtcatcgaagcgcccgagaacgcgggcacgtacccggaa
ttcggagcgctctgtgcgctgctggaccgactgcagaaggagcgcaggcaggaaatgcgc
cggacgctgctccagaagtggtttgccctgtggcgcgagcgtgtcggtccggacttgtac
ccactcctgcgcctgctcctgccccagaaagaccgcgagcgcgcagtatacaacatcaag
gagaagacgctcgccaaagcgttcatcaaggctctcggactcgaccccaaggccccggac
tccatgcgcctcatgaactggaagaaaccgacagagaagggcaaaacggcgggcgacttc
cccaccgtgctctacgaagtcgtctccaagcgctcgtccgtcatgcgcggcaccatgcgt
gtcgaccaggtcaacgcctgcctcgacgatctcgcggcctgcgctggtaaacttgacaag
attatgcatgctgtccgacgtatcagcgacgcgactacgccgtccgagcagcgttggatc
gtccgtattatcctgaaagacctcattatctccgtgaaggagactactatcctctccgtc
ttccacccagacgcgctgtcgctgttcaacacctgctcagacctgaagcgcgtcgcgcac
cagttgtgggacgagaactgtcgtttgaatgaccaggacaagggcgtgcagttgttccgc
tgctttgcgcccatgctttgcaaacgtccgactaagagtctcgaggaaactgtggcgctt
atgaagggtgccaagttcatcattgaggagaagctggacggcgagcgcatccaggtgcac
aagcgcgggaatgagtacctttactactcgaggaaaggcaaggattacacgtacctgtac
ggcaagaccgtcagctcggagaaggcgagcctcacgccgtacttacacaaggcgttccgc
ggtgacgtgcgcgattgcattttggacggggaaatgctcgtgtgggatccggtcagtgag
aagctcatgccgttcggtcacctcaagacggcagctttgggtaatgccagagaactcacc
aatccacgtccatgcttcaagattttcgatatcctctacgtcaatggcaagtctctgctg
gacaagaagctttcgcagcgcaagagactggcgcacgagatcatcaaggagaacaagggt
cgtgtcgagttctcctatcaggacgaaggacacactgcgaaggaaattcgagacgctctg
cagaaagtcatggaggaacggggcgaggggctggtcataaagcatcccgattcgcagtac
caactgaacggccgcgtgagcgactggatcaaggtcaagcccgagtacatggacgatatg
ggcgagactgtcgatgtactcgtcgtcggtgggaattatggctctggaaagcgtggtgga
ggcgtctcgacctttgtctgcgccgtcatcgaggatcgcgacaactcggaagacgacacc
aagtactcgacgttcgtgcgcatcggttccgggttcacgtacggcgactacctgtccatt
cgcgcgaagccctggaagccgtggggcaagaaaggaccttcctggctgattactgcgcct
accggccaggatgacaaggccgacgtatacctcgaccccgaagagtcgttcgtcgtgaaa
gtcaaggcggcagagatcactaagactgatcagtacggcatgaagctgaccatgcgcttt
ccgcgtgcggtgcgcatccgcgacgatctggattggacgcaatgcatgaccgcgtctgat
atccttgagatgaccgcgtcgacctcgaagaagcgcaaggcagaagatgacccggaagga
tcgaagaagaagcggaagactgtgaagaaaccctccgcattatcgcaggccttcaaggga
gcagacacaacgaatatcctggtcacatccgatatcttcgccggcatgaaattccatgtg
ctcgataacccgcgcgtggtggaccagaagaagtcgcttgagaccctgatcaagcagcac
ggtggcgctttctgccagaagccgttggctcgggaggttacgtccgtattcagagtgttc
ggcgggtcggaccagaagccacccctcagagtggccaacatcataaacgaggactcgtct
gacatcctgcggccgagctacatcttcgactctgtggagcgcaacgaacggctgccgttg
agcaagaaatacttcttccacagagcaggtgggaaatctcgtacagaggaagaagaagcg
gaatatcagcaagacgacgaggctgcacaggcaagcgacgacgccatggacgcgagtgct
agcgtcgatctgcgcaattccgtgcatcctgtgaagcgcgagagcgttgagcctgagctc
gatccttcgttatcgcagtactccgagtgggtgtccgtgagcgacggcgagaaggccaag
cagacgaggcacaagaacgaccctgcggacgagtccgagacggaagacgagtcttcgtgg
gaggcggccgatgacgatgagcagaccgacgagtgggagatgttgagctctggcaggctc
aacgagtcaatagtgaatcgcgaagcgactctggagggcgatgacgtccagttcacaccg
accgtaaagcaggcagccattttgccgttagcagaaaaggtcgctgccaagatgggcgaa
gacgattctgccatggagtacgaccccgatatcatattcaaacacttatgtttctacttg
gatacacctgcaaatgcacggcggaatggcatggacgtcagctccaatcttgaggctcaa
atcacggacgacttggacgaaatccagaagatgatagaagataacggagggaagattgtt
gacctgacggacccgaagttaacccatgtcattgtcgacaagcgagactacacacgaatg
cgcgagttgaggaagaggaccagcaagccgaagcagaggcagctagtacaatccgacttt
atcagagccgcggtggatgcggagacgctgccagatgaggatggattccggccctga

  All links  
Ontology (3)   
   KEGG BRITE (3)   
Pathway (1)   
   KEGG PATHWAY (1)   
Chemical substance (5)   
   KEGG COMPOUND (5)   
Chemical reaction (2)   
   KEGG ENZYME (1)   
   KEGG REACTION (1)   
Genome (1)   
   KEGG GENOME (1)   
Gene (20)   
   KEGG ORTHOLOGY (1)   
   RefGene (16)   
   NCBI-PROTEINID (1)   
   JGI (1)   
   OC (1)   
Protein domain (9)   
   Pfam (9)   
All databases (41)   

Download RDF
DBGET integrated database retrieval system