KEGG   Tsuneonella dongtanensis: A6F68_02347
Entry
A6F68_02347       CDS       T04466                                 
Symbol
rnr
Name
(GenBank) Ribonuclease R
  KO
K12573  ribonuclease R [EC:3.1.13.1]
Organism
ado  Tsuneonella dongtanensis
Pathway
ado03018  RNA degradation
Brite
KEGG Orthology (KO) [BR:ado00001]
 09120 Genetic Information Processing
  09123 Folding, sorting and degradation
   03018 RNA degradation
    A6F68_02347 (rnr)
 09180 Brite Hierarchies
  09182 Protein families: genetic information processing
   03019 Messenger RNA biogenesis [BR:ado03019]
    A6F68_02347 (rnr)
   03016 Transfer RNA biogenesis [BR:ado03016]
    A6F68_02347 (rnr)
Enzymes [BR:ado01000]
 3. Hydrolases
  3.1  Acting on ester bonds
   3.1.13  Exoribonucleases producing 5'-phosphomonoesters
    3.1.13.1  exoribonuclease II
     A6F68_02347 (rnr)
Messenger RNA biogenesis [BR:ado03019]
 Prokaryotic type
  Bacterial mRNA degradation factors
   RNA degradosome components
    Ribonucreases
     A6F68_02347 (rnr)
Transfer RNA biogenesis [BR:ado03016]
 Prokaryotic type
  tRNA degradation factors
   A6F68_02347 (rnr)
SSDB
Motif
Pfam: RNB CSD2 S1 RNase_II_C_S1
Other DBs
NCBI-ProteinID: ANY20846
UniProt: A0A1B2AFD7
Position
complement(2358575..2360845)
AA seq 756 aa
MKKNHRSGTPTRAQILEFLQSSPTIAGKREIAKAFGLKGQEKIALKALLKDMAEEGLIDG
KKTAYHRMGGVPKVTVLRIAEIEDGEPYAIPDAWSPDDATPPPRLRVIEGRKGRGNAKFP
ALKVGDRILARTEETGRGWTAHPMKKLPARTDGLMGVVELDRTGKGWLAPVDKRVRTSSP
IADLGGAEEGQLVLAEPAGKSPRSGVNVVEVLGDPLAPKAFSLIAIAKHGIPHVFGEETI
AEAERAAQLPLSAEHREDLRDLPIVAIDPADARDHDDAIWAEPDGEGGYRAVVAIADVSF
YVRPGGQLDREARKRGNSVYFPDRVVPMLPEVLSADVCSLKEGEDRAAMACHLRISPEGK
VTKFRFTRALVRIAHNIAYEDAQAEIDGDAPREFLSHLWGAWKLLAAARAARDPLELELP
ERQVRLDEHGKISEIAIRERLDAHRVVEDFMIAANVAAAKALEAKTAPVVYRVHEAPGRE
KLVALRDYMKTFGHSLALGQVITPGLFNRLLKDIVDDSEKAQVMEAVLRSQTQAYYGPAN
AGHFGLALGSYAHFTSPIRRYADLLVHRALVDAYKLEQPKPKGSLPESTGLSDRDRADLS
KVSEAISQAERRAMEAERETIDRYVAAWLAGRVGEVFPTRITGVQSFGFFATIVGLGGDG
LIPVSTLGSEYFTYDEAAQRLVGKDSGTTYAPGDKLELRLAEANPLTGALKFELPNAEGR
IEPRGNRPPPKDRPKPKHLQGKRGRPGNIRHQGRGR
NT seq 2271 nt   +upstreamnt  +downstreamnt
atgaagaagaaccacagatccgggacgcccacccgggcgcagatcctcgaattcctccag
tcgagtccgacgatcgccggcaagcgcgagatcgccaaggctttcgggttgaaggggcag
gaaaagatcgcgctgaaggcgctgctcaaggacatggccgaggaaggcctgatcgacggt
aagaagaccgcctatcaccgcatgggcggcgtgcccaaggtcaccgtgctgcgcatcgca
gagatcgaggacggcgaaccctatgccattcccgacgcctggtcgcccgacgacgccact
ccgccgccgcggctgcgggtgatcgaaggcaggaagggccgcggcaacgcgaagtttccc
gcgctcaaggtcggcgaccgcatccttgcgcggaccgaggaaaccgggcgcggctggacc
gcgcatccgatgaagaagctgcccgcgcggaccgacgggctgatgggggtggtcgagctc
gaccggaccggcaagggctggcttgcgccggtcgacaagcgggtgcgtacgtcgagcccg
atcgccgacctgggcggggcggaagaggggcagctcgtgctcgccgagccggcgggcaag
tcgccgcgctcgggcgtcaatgtcgtcgaggtcctcggcgatccgcttgcacccaaggcc
ttcagcctgatcgccatcgccaagcacggcattccgcacgtcttcggcgaagagacgatc
gccgaagcagagcgtgccgcgcaattgccgctgtcggccgaacatcgcgaggacctgcgc
gacctgccgatcgtcgcgatcgatccggccgacgcgcgcgaccacgacgacgcgatctgg
gccgaacccgacggggagggcggataccgcgccgtcgtcgcgatcgcggacgtgtcgttc
tacgtccgcccaggcggccagctcgaccgcgaagcgcgcaagcgcggcaactcggtctat
ttccccgatcgcgtggtgcccatgctgcccgaggtgctgagcgccgacgtctgctccctg
aaggaaggcgaggaccgcgcggcgatggcgtgccacctgcgcatttcgcccgaggggaag
gtcaccaagttccgcttcacccgcgcgctggtccgcattgcgcacaacatcgcctatgag
gacgcccaggccgaaatcgacggcgatgctccgcgcgaattcctgtcgcatctgtggggc
gcgtggaagctgctcgcggccgcacgggcggcacgcgatccgctcgaactcgaactcccc
gagcggcaggtcaggctcgacgagcacggcaagatcagcgagatcgcgatccgcgaacgg
ctcgatgcgcaccgcgtggtcgaggacttcatgatcgccgccaacgtcgctgcggccaag
gcgctcgaggcgaagaccgcacccgtcgtctaccgcgtccacgaagcgccggggcgcgag
aagctcgtcgcgctgcgcgattacatgaagaccttcggccacagcctcgcgctggggcag
gtgatcacgcccggtctgttcaatcgcctgctcaaggacattgtcgacgacagcgagaag
gcgcaggtcatggaagccgtcctgcgcagccagacgcaggcgtattacggcccggccaat
gcggggcacttcggccttgcgctgggcagctacgcgcacttcacgtcgcccatccggcgc
tatgccgacctgctcgtgcaccgcgcgctggtcgatgcctacaagctcgaacagccgaag
ccgaagggcagcctgccggaatcgaccggcctgtcggatcgcgaccgcgccgacctgtcg
aaggtgtccgaagcaatcagccaggcggaacgccgcgcgatggaggccgagcgcgagacg
atcgaccgttacgtcgccgcctggctcgccgggcgcgttggcgaggttttcccgacccgc
atcaccggagtgcagagcttcggcttcttcgccaccatcgtcggcctcggcggcgacggt
ctgatccctgtttcgaccctcggcagcgaatacttcacctacgacgaggcggcccagcgg
ctcgttggcaaggacagcggcacgacctacgcgcccggcgacaagctcgaactgcggctt
gccgaagcgaacccgctcaccggcgcgctgaagttcgagctgccgaatgccgagggccgg
atcgagccgcgcggcaaccggccgccgcccaaggacaggcccaagccgaagcacctgcag
ggcaagcgcgggcgccccggcaacatccgtcaccagggccgggggcgctag

  All links  
Ontology (4)   
   KEGG BRITE (4)   
Pathway (1)   
   KEGG PATHWAY (1)   
Chemical reaction (1)   
   KEGG ENZYME (1)   
Genome (1)   
   KEGG GENOME (1)   
Gene (3)   
   KEGG ORTHOLOGY (1)   
   NCBI-PROTEINID (1)   
   OC (1)   
Protein sequence (1)   
   UniProt (1)   
Protein domain (4)   
   Pfam (4)   
All databases (15)   

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