KEGG   Arachis duranensis: 107487442
Entry
107487442         CDS       T04300                                 
Name
(RefSeq) DNA-directed RNA polymerase II subunit RPB1
  KO
K03006  DNA-directed RNA polymerase II subunit RPB1 [EC:2.7.7.6]
Organism
adu  Arachis duranensis
Pathway
adu03020  RNA polymerase
adu03420  Nucleotide excision repair
Brite
KEGG Orthology (KO) [BR:adu00001]
 09120 Genetic Information Processing
  09121 Transcription
   03020 RNA polymerase
    107487442
  09124 Replication and repair
   03420 Nucleotide excision repair
    107487442
 09180 Brite Hierarchies
  09182 Protein families: genetic information processing
   03021 Transcription machinery [BR:adu03021]
    107487442
   03400 DNA repair and recombination proteins [BR:adu03400]
    107487442
Enzymes [BR:adu01000]
 2. Transferases
  2.7  Transferring phosphorus-containing groups
   2.7.7  Nucleotidyltransferases
    2.7.7.6  DNA-directed RNA polymerase
     107487442
Transcription machinery [BR:adu03021]
 Eukaryotic type
  RNA polymerase II system
   RNA polymerase II
    Core subunits
     107487442
DNA repair and recombination proteins [BR:adu03400]
 Eukaryotic type
  SSBR (single strand breaks repair)
   NER (nucleotide excision repair)
    TCR (transcription coupled repair) factors
     DNA-directed RNA polymerase II complex
      107487442
SSDB
Motif
Pfam: RNA_pol_Rpb1_1 RNA_pol_Rpb1_5 RNA_pol_Rpb1_2 RNA_pol_Rpb1_6 RNA_pol_Rpb1_7 RNA_pol_Rpb1_3 RNA_pol_Rpb1_4 RNA_pol_Rpb1_R MIF4G_like_2
Other DBs
NCBI-GeneID: 107487442
NCBI-ProteinID: XP_015963571
UniProt: A0A6P5NJ81
Position
5:complement(4032382..4040345)
AA seq 1836 aa
MDIRFPYSPAEVAKVRRVQFGIISPDEIRQMSVVQIEHGETTERGKPKVGGLSDPRLGTI
DKKLKCETCTAGMAECPGHFGHLELAKPMFHIGFMKTVLSIMRCVCFNCSKILADENDHK
FKQATKIRNPKNKLKKILDACKNKSKCEGGDEIDLAGGHDTDEPVKKSRGGCGAQQPKIT
IDGMKMTAEYKSQRKKSDDQEQLPEPGERKQHLTAERVLGVLKRISDEDCKLLGLDPNYA
RPDWMILQVLPIPPPPVRPSVMMDTSSRSEDDLTHQLAMIIRHNENLKRQERNGSPAHII
LEFAQLLQFHIATYFDNELPGLPRATQRSGRPIKSICSRLKAKEGRIRGNLMGKRVDFSA
RTVITPDPTINIDQLGVPWSIALNLTYPETVTPYNIERLKELVEYGPHPPPGKTGAKYII
RDDGQRLDLRYLKKSSDHHLELGYKVERHLNDGDFVLFNRQPSLHKMSIMGHRIKIMPYS
TFRLNLSVTSPYNADFDGDEMNMHVPQSFETRAEVLELMMVPKCIVSPQSNRPVMGIVQD
TLLGCRKITKRDTFITKDVFMNILMWWEDFDGKVPTPTILKPEPLWTGKQVFNLIIPKQI
NLTRVSSWHNDSERGSITPGDTLVRIEKGELLTGTLCKKTLGTSTGSLIHVIWEEVGPDA
ARKFLGHTQWLVNYWLLQNAFSMGIGDTIADASTMEVINQTISKAKEEVKQLIRKAQEKN
LDPEPGRTMMDTFENRVNQALNKARDDAGNSAQRSLSESNNLKAMVTAGSKGSFINISQM
TACVGQQNVEGKRIPYGFIDRTLPHFTKDDYGPESRGFVENSYLRGLTPQEFFFHAMGGR
EGLIDTAVKTSETGYIQRRLVKAMEDIMVKYDGTVRNSLGDVIQFLYGEDGMDAVWIETQ
KLDSLKMKKSEFDRAFKYEFDDENWRPTYMLEEPIEDLKTIREFRNVFEAEVQKLENDRL
QLATEIATTGDSSLPLPVNLRRLIWNAQKMFKVDFRRPSDMHPMEVVEAIDKLQERLKVV
PGEDPLSQEAQKNATLLFNILLRSTFASKRVLEEHRLSREAFEWLVGEIESRFLQSLVAS
GEMIGCVAAQSIGEPATQMTLNTFHYAGVSAKNVTLGVPRLREIINVAKRIKTPSLSVFL
NPETGKTKERAKGVQCALEYTTLRSVTQATEVWYDPDPQSTIIEEDVDFVKSYFEMPDEE
VPLDKMSPWLLRIELNREMMVDKKLSMADIAEKINLEFDSDLQCIFNDDNAEKLILRIRI
MNDEAPKGEIQDESAEDDVFLKKIESNMLTEMTLRGIPDINKVFIKPTKVQKFDEIEGFK
THEEWALDTEGVNLLAVMCHEHVDAKRTTSNHLIEVIEVLGIEAVRKALLDELRVVISFD
GSYVNYRHLAILCDTMTYRGHLMAITRHGINRNDTGPMMRCSFEETVDILLDAAVYAETD
YLRGVTENIMLGQLAPIGTGECALYLNDEMLKNAIELQLPSYMDGLDFGMTPARSPISGT
PYHEGLMSPSYLLSPNLRLSPTSDAQFSPYVGGMAFSPTSSPGYSPSSPGYSPSSPGYSP
TSPGYSPTSPGYSPTSPGYSPTSPTYSPSSPGYSPTSPAYSPTSPSYSPTSPSYSPTSPS
YSPTSPSYSPTSPSYSPTSPAYSPTSPAYSPTSPAYSPTSPSYSPTSPSYSPTSPSYSPT
SPSYSPTSPSYSPTSPAYSPTSPGYSPTSPSYSPTSPSYSPTSPSYNPQSAKYSPSLAYS
PSSPRLSPSSPYSPTSPNYSPTSPSYSPTSPSYSPSSPTYSPSSPYNNSGASPDYSPSSP
QYSPSTGYSPSQPGYSPSSTSQYTPQTSDKDDRSTR
NT seq 5511 nt   +upstreamnt  +downstreamnt
atggatattcggttcccttattctccggcggaggtcgccaaagtccgaagggttcagttc
ggaattatcagccccgacgagattagacaaatgtctgtggtgcaaattgagcacggcgag
actacggagagggggaaacccaaagttggagggttgagcgaccctcgccttggaaccatt
gataagaagttgaagtgtgagacttgcacggctggtatggccgagtgcccggggcatttc
ggtcacttggagctggctaagccaatgtttcacattggatttatgaagacggttctctcc
ataatgcgttgtgtttgcttcaactgctccaagattttagccgatgagaatgaccataag
tttaaacaggcgacgaagattaggaatccgaaaaataagctgaagaagattttggatgct
tgtaagaacaaaagcaagtgtgaaggtggtgacgagattgaccttgctggtggtcacgac
acagacgagccggttaaaaagagccgtggcggctgtggtgctcagcagcctaagatcacc
atcgatggtatgaagatgactgcagagtacaaatctcaaaggaagaagagtgatgatcag
gagcagcttcctgaacctggggaaaggaagcagcatcttactgcagaaagggttcttggt
gttctaaaaagaataagtgatgaggactgcaaattattgggcttggatcccaattatgcc
cgcccagactggatgattttacaagttctcccaattccacctccacctgtgagaccttct
gttatgatggacacatcctcaaggagtgaggatgatttgacccatcagttggccatgatc
atcaggcacaatgagaatttgaagagacaagagaggaatggatcacctgcccatattata
cttgagtttgcccagttgttgcagttccacatagccacatattttgacaatgagttgcct
gggttgccaagagctacccagagatccggaaggcctatcaaatcaatatgtagcaggctc
aaggcaaaggaaggtcgtattagaggaaacttgatgggaaaaagagttgatttttctgcc
cgaacagtgattacaccagatccaaccattaacatcgatcaattgggggtaccatggagt
atcgctctgaaccttacttatcctgagactgtgactccatataacattgaaaggttgaag
gaacttgttgagtatggaccccatcctccacctggaaaaactggtgctaagtacatcatt
cgtgatgatgggcaaagacttgatctcagatatttgaagaaaagtagtgatcatcatttg
gagcttgggtacaaggtcgagcgtcatttgaatgacggagactttgttctcttcaatcgt
cagcctagtcttcataaaatgtctatcatggggcatagaatcaaaatcatgccttattct
acgttccggcttaatctgtctgtaacttccccttataatgctgattttgatggggatgaa
atgaatatgcatgttcctcagtcatttgaaacaagagcagaggtgttggagcttatgatg
gtgcctaaatgcattgtgtcacctcaatcaaacaggcctgtaatgggaattgtgcaagat
acacttttaggatgcagaaaaatcacaaagagagataccttcatcacaaaggatgttttt
atgaacattttgatgtggtgggaagattttgatgggaaagttccgactcctacaatattg
aagccagagccattgtggactgggaaacaagttttcaatctcatcattcctaaacaaata
aatttaacaagagtttcaagctggcacaatgatagtgaacggggatccataacccctggg
gataccttggtcagaattgagaagggagaattacttactggaactctttgcaaaaagaca
cttggtacatctactggaagtctaattcacgtcatctgggaagaggttggccctgatgca
gctcgtaaatttcttggccatactcagtggcttgtaaactactggcttttgcagaatgcg
tttagcatgggaattggtgatacaattgctgatgcttcgactatggaggttattaaccag
actatatcaaaggctaaggaggaagtgaagcaactcattaggaaggctcaagaaaaaaat
ctggaccctgaacctggtcggacaatgatggatacctttgaaaatagagtgaatcaggca
ctgaataaagctcgagatgatgctggaaacagtgcacaaagaagtttatccgagagcaat
aatctaaaagcaatggtcacagcaggctccaaaggaagttttatcaatatatctcagatg
actgcttgtgtgggacagcagaatgttgaggggaagagaattccatatgggtttatagat
cggacactgccccactttacaaaagatgattatgggcctgaaagtcgtggctttgtggag
aactcatatctccgtggacttacccctcaggagttctttttccatgccatgggaggtcga
gaaggtcttattgatactgcagtgaagacttctgaaactgggtacatccagagacggctt
gtgaaggctatggaggacatcatggttaagtatgatgggacagttaggaactctttggga
gatgttatacaatttctttatggagaagatggtatggatgcagtttggatagaaacacag
aagttggattcactgaaaatgaagaagtcagaatttgatagggcctttaagtatgagttt
gatgatgaaaactggaggcccacttacatgctagaagagcctatagaagacttgaaaacc
atcagagagtttcgcaatgtgtttgaggctgaagttcaaaagcttgaaaatgatagactt
caacttgcaactgagatagccactactggtgacagttctcttccactacctgttaatcta
aggaggcttatctggaatgctcagaagatgttcaaggttgacttccgaaggccttctgat
atgcatccaatggaagtcgtggaagctattgataagctacaagagagacttaaggttgtt
ccaggtgaagatcccttgagtcaagaagctcagaagaatgctaccctcttgttcaatatt
ttgctccgcagcacttttgctagtaaacgtgtcttggaagaacataggctctctcgtgag
gcatttgagtggctagtgggagaaatagaatcaaggttcctgcagtcacttgtagcctct
ggggaaatgattggttgtgtagcagcgcaatcaattggtgagcctgctactcagatgact
ctcaacaccttccactatgctggtgttagtgctaagaacgttacacttggtgttccgagg
ttaagggaaatcattaatgttgcaaagaggatcaaaacaccttctttgtcggtatttttg
aatcccgagactggcaagactaaagaaagggccaagggtgtgcagtgtgctttagaatat
actactcttaggagtgtgactcaggctacagaggtttggtatgatccagacccccagagt
acaataattgaagaagatgttgattttgtgaagtcttactttgaaatgcccgatgaagaa
gttcctcttgataaaatgtcaccttggttgcttcgcatagaactgaatcgtgaaatgatg
gtggataagaagttgagtatggctgacattgctgagaagattaaccttgaatttgattct
gatctgcaatgtatttttaatgatgacaatgctgaaaagcttatacttcgtatccgtatt
atgaatgatgaagctcccaagggagagattcaggatgagtcggctgaagatgatgttttc
ttaaagaaaatagaaagcaacatgctgactgaaatgaccttacgtggcattccagacatc
aacaaagtttttataaaacccaccaaagttcagaaatttgacgagattgaaggttttaaa
actcatgaggaatgggcacttgatacagaaggtgtcaatcttttagctgtgatgtgccat
gagcatgttgatgccaagaggaccacaagcaaccatttgattgaagttatcgaagttctt
ggaattgaggcagtccgaaaagctctgcttgatgaactgcgtgttgtcatttcttttgat
ggttcttatgtgaactacaggcatctggctattctttgtgataccatgacttatcggggg
catttgatggctattacacgtcatggtatcaacaggaatgataccgggccaatgatgaga
tgctcatttgaagagacagttgacattctccttgatgctgcagtatatgccgagactgat
tacttgaggggagtcactgaaaatattatgttaggtcagcttgcccctattggaactgga
gaatgtgctctatatctaaatgatgagatgcttaagaatgctattgagctccagctacct
agctatatggatggtcttgattttggcatgacgcctgctcgttccccaatttctggaact
ccctatcatgaaggcttgatgtctccaagttatttgttgagcccaaatctgcgcctgtca
ccaactagtgatgcacagttttcaccttatgttggtggaatggctttctctcctacttca
tccccggggtacagtccttcatcaccgggatatagtccatcatcacctggatatagccct
acctctcctggctacagcccgacatctcctggctacagccccacctctccaggctacagc
cctacctctcccacgtatagtcctagttctccaggatatagtcctacaagtccagcttat
tctcctactagtccatcatactctcccacttcaccaagctacagcccaacttctccaagc
tacagcccaacttctccaagctatagccccacctcaccaagctacagccccacctcacct
gcctacagcccaacttcacctgcctacagcccaacatcacctgcatacagtcctacttct
ccttcatatagcccaacatcaccttcatatagtcctacttctccttcatatagcccaaca
tcaccttcatacagcccaacatcaccttcatacagtcctacatcacctgcgtacagccct
acctctcctggttatagccccacatcacctagttatagccccacttctcccagttatagt
cctacttctcccagttacaatccacagtctgcaaagtatagtccttccttggcatattct
ccaagtagccctagattgtctccgtcaagcccgtatagtccaacatctccaaactacagc
ccaacatctccatcatattctccaacatctccatcttattctccatcaagcccaacatac
agccccagcagcccatacaataattctggtgcaagcccggactatagcccaagctctcca
caatacagccccagtacgggatactcaccgagtcaacctggttattcaccatcatcaacc
agccaatacaccccacaaacaagtgacaaggatgataggagcactcgctga

  All links  
Ontology (4)   
   KEGG BRITE (4)   
Pathway (2)   
   KEGG PATHWAY (2)   
Chemical reaction (1)   
   KEGG ENZYME (1)   
Genome (1)   
   KEGG GENOME (1)   
Gene (4)   
   KEGG ORTHOLOGY (1)   
   NCBI-PROTEINID (1)   
   NCBI-Gene (1)   
   OC (1)   
Protein sequence (2)   
   UniProt (1)   
   RefSeq(pep) (1)   
DNA sequence (5)   
   RefSeq(nuc) (1)   
   GenBank (2)   
   EMBL (2)   
Protein domain (9)   
   Pfam (9)   
All databases (28)   

Download RDF
DBGET integrated database retrieval system