KEGG   Altererythrobacter epoxidivorans: AMC99_01187
Entry
AMC99_01187       CDS       T04070                                 
Name
(GenBank) RNA-binding protein Hfq / RNA-binding protein Hfq
  KO
K03666  host factor-I protein
Organism
aep  Altererythrobacter epoxidivorans
Pathway
aep02024  Quorum sensing
aep03018  RNA degradation
Brite
KEGG Orthology (KO) [BR:aep00001]
 09120 Genetic Information Processing
  09123 Folding, sorting and degradation
   03018 RNA degradation
    AMC99_01187
 09140 Cellular Processes
  09145 Cellular community - prokaryotes
   02024 Quorum sensing
    AMC99_01187
 09180 Brite Hierarchies
  09182 Protein families: genetic information processing
   03019 Messenger RNA biogenesis [BR:aep03019]
    AMC99_01187
   03036 Chromosome and associated proteins [BR:aep03036]
    AMC99_01187
Messenger RNA biogenesis [BR:aep03019]
 Prokaryotic type
  Bacterial mRNA degradation factors
   Other RNA degradation factors
    Chaperones
     AMC99_01187
Chromosome and associated proteins [BR:aep03036]
 Prokaryotic type
  Nucleoid associated proteins
   Other nucleoid associated proteins
    AMC99_01187
SSDB
Motif
Pfam: Hfq DUF5761 Polysacc_deac_1
Other DBs
NCBI-ProteinID: ALE16482
UniProt: A0A0M3TA58
Position
complement(1135489..1136031)
AA seq 180 aa
MTNGRTLSARPRSEPDPVSSKDSRQANLQDAFLNLLRKNKVPVTMFLVKGVKLQGIVTWF
DNFSILLRRDGQSQLVYKHAISTIMPGQPIDAEQFASQAGNKKQRLLQDVFLSRVSEVNV
QVTMFLVNGVMLQGRIAAYDLFCMLLERDGFVQLAYKHAVSTIQPASPVDLTDDWEGDED
NT seq 543 nt   +upstreamnt  +downstreamnt
atgaccaatgggcgaaccctttctgcccgaccgcgttccgagcccgatccagtctcttcg
aaagatagcaggcaggccaatctccaggacgcgtttcttaatttgctgcgcaagaacaag
gttcctgtaacgatgttcctggtgaagggcgtcaaactgcagggcattgtcacgtggttc
gacaacttctcgatccttttgcgccgcgatggccaatcgcagcttgtttacaagcatgcg
atatcgaccatcatgcccggtcagccgatcgatgccgaacagttcgccagccaggcgggg
aacaagaagcagcgcctgttgcaggatgttttcctatcgcgcgtcagcgaagtgaacgtc
caggtcacgatgttcctcgtgaacggcgtgatgctccaggggcggatcgcagcatacgac
ctcttctgcatgttgctggagcgcgacgggttcgtacagcttgcctacaagcacgcagtt
tcgacgatccagcctgcatcgccggtcgacctgaccgacgattgggaaggtgacgaagac
tga

  All links  
Ontology (3)   
   KEGG BRITE (3)   
Pathway (2)   
   KEGG PATHWAY (2)   
Genome (1)   
   KEGG GENOME (1)   
Gene (3)   
   KEGG ORTHOLOGY (1)   
   NCBI-PROTEINID (1)   
   OC (1)   
Protein sequence (1)   
   UniProt (1)   
Protein domain (3)   
   Pfam (3)   
All databases (13)   

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