KEGG   Altererythrobacter epoxidivorans: AMC99_01243
Entry
AMC99_01243       CDS       T04070                                 
Name
(GenBank) Metallo-beta-lactamase family protein, RNA-specific
  KO
K12574  ribonuclease J [EC:3.1.-.-]
Organism
aep  Altererythrobacter epoxidivorans
Pathway
aep03018  RNA degradation
Brite
KEGG Orthology (KO) [BR:aep00001]
 09120 Genetic Information Processing
  09123 Folding, sorting and degradation
   03018 RNA degradation
    AMC99_01243
 09180 Brite Hierarchies
  09182 Protein families: genetic information processing
   03019 Messenger RNA biogenesis [BR:aep03019]
    AMC99_01243
Messenger RNA biogenesis [BR:aep03019]
 Prokaryotic type
  Bacterial mRNA degradation factors
   RNA degradosome components
    Ribonucreases
     AMC99_01243
SSDB
Motif
Pfam: Lactamase_B Lactamase_B_2 RMMBL RNase_J_C
Other DBs
NCBI-ProteinID: ALE16537
UniProt: A0A0M5KZF8
Position
complement(1193759..1195420)
AA seq 553 aa
MKKDCTPENELLFLALGGSGEIGMNVNLYGCDGKWLMVDLGMTFSGNEYPGVDLVFADLE
FIEERADDLLGIVLTHAHEDHIGAVPYFAAELGVPLYATPFTADLVLRKLEEAGIAGEIE
LNVIPDDHGSFELGSFGITYIPLAHSIAEGNALLIETPYGRIFHTGDWKLDEEPIIGEPT
TAEELTEIGDEGVLALVCDSTNVFNTASSGSEGAVYRGLMEEVARHPGKRVLVTTFASNV
ARLQTLGDVAKETGRQLCVAGRSLDRIIEVAQDNGYLTDLPDLIDFDTAMSLPRGEVLIL
ATGGQGEPRAALARIAEGNHPIELVSGDVVLFSSRQIPGNELSIGRVQNQLASRGITMVT
DRQSEIHVSGHPGRPDLEALYGWLRPEILVPVHGEMRHMREQAKFGRSTGIPQAVVQQNG
DIVRLAPGKAGKLADVRAGRLVLDGDIIAPADGDAITMRRRLARDGLLMVVLDQSLQPTI
EAIGLPLDEDLPEFLAEAQSDIVDALRKLKGRGGRSIDDVHEAARLAARRAAQRWSGKKP
QVKVIILPGSSNR
NT seq 1662 nt   +upstreamnt  +downstreamnt
ttgaagaaagactgcactcccgaaaacgaactgcttttcctcgcgctcggtggctcgggc
gagatcggcatgaacgtcaacctctatggttgcgacggcaaatggctgatggtcgatctc
ggcatgacattttccggcaacgagtatccgggtgtcgacctggtgtttgccgacctcgaa
ttcatcgaagagcgcgctgatgatctattgggcatcgtcctgacgcatgcgcacgaagat
cacatcggcgcagtgccctatttcgccgccgagctcggcgttccgctatacgccacaccg
tttacagccgacctcgtcctgcggaagctggaagaagcgggtatcgctggcgagatcgaa
ttgaacgtaattcccgacgaccacggctctttcgagctcggctcgttcggcatcacttat
attccgctggcgcactcgattgcagagggcaacgccctgctgatcgagacgccctatggc
cgcatcttccatacgggcgactggaaactcgacgaagagccgatcatcggtgaaccgaca
accgcagaagagctgaccgagatcggtgacgagggggttctcgcgctcgtctgcgacagc
accaatgtcttcaacacggcatcgagcgggtccgagggcgcggtctatcgcggcctgatg
gaagaagtcgcaaggcacccgggcaagcgggttctggtcacgactttcgcctccaacgtc
gcaaggctgcaaactctgggagatgtagccaaggaaaccggccgccaattgtgtgttgcc
gggcgctcgctcgaccgcattatcgaggtggcgcaggataatggttatctcacggacctg
cccgatctgatcgatttcgacaccgccatgtcgctgccgcggggcgaagtcctgattctg
gcaacgggcggccagggtgagccgcgcgcggcactcgcccggattgctgaaggaaatcat
cccatcgagctcgttagcggcgatgtcgtcctgttttcgtcgcgccagatccctggaaac
gaactgtcgattggccgggtccagaaccagctcgcgtctcgcggcatcacgatggtgacc
gaccggcaaagcgaaatccacgtgtccggccacccgggacgccccgatctggaagcgctt
tacggttggctgcgacctgaaatcctcgtgccggtccacggcgaaatgcgtcatatgcgg
gagcaggccaaattcggccgctcgaccggaatcccccaagctgttgtccagcagaatggc
gatatcgttcgccttgctccgggcaaggctgggaagttggccgatgtgcgcgccgggcgg
ctcgtcctggatggggatatcatcgctcctgcagatggcgatgccatcaccatgcggcgt
cgtctggcgcgtgacgggctgttgatggtcgtgctcgaccaaagcctgcagccgaccatc
gaagcgataggtcttccgctcgacgaagacctgccagaattcctcgccgaagctcagagc
gacatcgtcgatgcgctccgcaagctgaaagggcgcggcggcaggagcatcgatgacgtg
cacgaagcggcacggcttgctgcgcgcagggctgcgcagcggtggtcgggcaagaagccg
caggtcaaggtgatcattctacccgggagcagcaatcgatga

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Ontology (2)   
   KEGG BRITE (2)   
Pathway (1)   
   KEGG PATHWAY (1)   
Genome (1)   
   KEGG GENOME (1)   
Gene (3)   
   KEGG ORTHOLOGY (1)   
   NCBI-PROTEINID (1)   
   OC (1)   
Protein sequence (1)   
   UniProt (1)   
Protein domain (4)   
   Pfam (4)   
All databases (12)   

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