KEGG T01378: Astex

Asticcacaulis excentricus: Astex_1372

Entry

Astex_1372 CDS T01378

Definition

DNA ligase d

Orthology

K01971

DNA ligase (ATP) [EC:6.5.1.1]

Organism

aex Asticcacaulis excentricus

Pathway

aex03410	Base excision repair
aex03420	Nucleotide excision repair
aex03430	Mismatch repair
aex03450	Non-homologous end-joining

Class

Genetic Information Processing; Replication and repair; Base excision repair [PATH:aex03410]
Genetic Information Processing; Replication and repair; Nucleotide excision repair [PATH:aex03420]
Genetic Information Processing; Replication and repair; Mismatch repair [PATH:aex03430]
Genetic Information Processing; Replication and repair; Non-homologous end-joining [PATH:aex03450]

SSDB

Motif

Pfam:

LigD_N DNA_ligase_A_M DNA_ligase_A_C DNA_primase_S mRNA_cap_enzyme DNA_ligase_OB_2 Caerin_1

Other DBs

NCBI-GI:

NCBI-GeneID:

JGI:

UniProt:

Position

1:1474686..1477229

AA seq 847 aa
MGLDLYNKKRDFAKTAEPEGKPGRKSGQRFLIQKHDARRLHYDFRLELDGVLKSWAVTRG
PSPNPQDKRLAVEVEDHPVAYGTFEGIIPKGQYGGGTVMMWDEGTWEPLDDPHKGLKAGS
LKFVLHGKRLSGEWALVRMKPRPKGPDRANWLLIKHDDAAARDDAAEAWLETQATSITTG
RRMEEIATNTQRVWTSRTRDEPPKRKQSKSMLEFIEPELATLAVAVPKGKDWVHEIKFDG
YRTQALIENGEVRLLTRTGLDWTHRFRPLPDYLAQMPVTSAILDGEIVAVDEGGRADFKT
LQATLAGEADVPLQFYVFDLLHSDGEDLRALPLVSRKARLQRLFNGNHFGGRVHYSEHFT
KDAADLKDRLCALDQEGLICKRANAPYHSGRNRAWLKVKCHKRQEFVIGGFTLPKAGSKG
IGALLIGYFQEGRLTYAGKVGTGFTLDSAIDLRRRLDLIAQKYHPFSDIPPEFKRGAHWV
APHLVAEVQFGEWTSDGRLRHPSFQGLREDKPPQDIHRDRPLSPTEVRKAEDVPAARKPK
RRAPASEKSPTDVVGGVAISSPDRVVFPGTDITKKDVAEYYLSVADHILPHIAGRPISTI
RCPQGIGGQCFFQRHLTQAAIPHVNDTGLPVNGREDDYIMITDAHGLISLMQWGVMEIHP
RGCMATTPNRPDRLIFDLDPDPEADWADVVAGAAEVRERMTEFDLQSFLKTTGGKGLHVV
IPIQPQYDWSAIKAFTRAVAESMTHDSPRRFVAQASKSKRKGRVFIDYLRNDFTATAVAP
YAVRARPGAPVAMPIDWKALSRDLDPAGFTLENTPAHLGRRKADPWADMARMNQRLSPKI
LKALNII

NT seq 2544 nt +upstreamnt +downstreamnt
atgggtctcgacctatataacaaaaagcgcgactttgccaaaaccgccgagccggagggc
aagccgggacgtaagagcggccaacgcttcttgatccagaagcacgatgccaggcgcctg
cactatgatttccgacttgagctggacggggtgctgaaatcgtgggcggttactcgcggc
cccagcccaaacccgcaggacaagcgactggcggttgaggtggaggaccaccccgtcgcc
tacggaacctttgagggcatcattccaaagggccagtacggtggcgggacggtgatgatg
tgggacgaagggacttgggaaccattggacgacccgcataaggggctgaaggcgggcagt
ctcaaattcgtactccacggcaagcggctcagcggcgaatgggcactagtgcgcatgaag
ccacgaccaaaaggccctgatcgcgccaactggttgctgatcaaacacgatgatgcggcg
gcacgcgacgatgcggccgaggcgtggctggaaacccaggcgaccagcatcaccacggga
cgtcgaatggaggagatcgccacgaacacccaacgtgtttggacatcacgaaccagggac
gagccgccgaaacgcaagcagtccaaatcaatgcttgaatttatagagccggagttggca
accctcgccgtcgcggtccccaaaggtaaggactgggtgcatgagatcaagttcgatggt
taccgaacgcaggccctgatcgaaaatggcgaggtgcgacttctgacacgcacgggcctg
gactggacgcaccgctttcgtccactgcctgactatttggcgcagatgccggtcaccagc
gctatacttgatggtgagatcgtcgccgtggacgaggggggccgtgcggatttcaagacc
ctccaggccaccctggccggagaagccgatgtgccattgcaattttatgtcttcgatctt
ctgcacagcgacggcgaggacttgcgcgcccttccgctcgtgtcacgtaaggccagactg
caaaggctgtttaatggcaatcatttcggcggacgtgttcactacagcgaacattttacg
aaggatgccgctgatctgaaggaccggctctgcgcgttggatcaggaaggcctgatctgt
aaacgcgccaatgcgccttaccactcagggcgcaaccgtgcatggctgaaggtcaagtgc
cacaagcggcaggaattcgttatcggtgggttcaccctccccaaggccggcagtaagggg
attggggctttgctgatcggctattttcaggagggccgcctgacctatgccggtaaggtg
gggacgggttttactctcgacagcgccatcgacctgcgccgcagactggacctgatcgct
caaaaatatcatccgttcagtgatattccgccagaatttaaacgcggggcgcattgggtc
gcgccgcaccttgtcgccgaggtgcagttcggcgaatggacttcagatggccgcttgcgc
cacccctcgtttcaaggcctgcgtgaagacaagccgccgcaggacatccaccgcgaccgc
ccactcagcccaactgaagtgcgcaaagccgaggacgtacctgcggctcgcaagcccaag
cgccgggcccccgcatcagaaaaatccccgacagacgtggtcggtggggtcgcgatctcg
tcgccagaccgcgtcgtttttcccggcacggatatcaccaagaaggacgtggctgagtat
tatctcagcgtcgccgaccatatcctgccgcacattgccgggcgtcccatctcaacgatc
cgctgcccacaaggcattggcggacaatgttttttccaacgccacctcacccaggccgcc
atcccgcacgtcaacgataccggtcttccggtcaatggccgcgaagacgattacataatg
attacggacgctcacggcctgatcagcctgatgcaatggggcgtgatggagatacacccc
cggggctgcatggccaccacgcccaaccgtcccgaccgcctgatcttcgatctcgacccc
gatccggaagcggactgggccgacgtggtggccggggcggctgaggtgcgcgagcgtatg
accgagttcgacctccagagtttcctcaaaaccacgggtggcaagggattgcacgtggtc
atccctattcaaccccagtacgactggagcgccatcaaagcctttacgcgtgccgtggcg
gaatccatgacgcacgacagcccgagacgctttgtggcgcaagcatcaaaatccaagcgc
aaaggccgagtctttatcgattacctgcgcaatgacttcaccgccaccgccgtggctccc
tatgctgtccgcgcgcgtcccggtgcgcccgtggcgatgccgatagattggaaggcactc
agccgcgacctcgatccggcaggtttcaccttggagaacacacctgctcatctcggacgg
cgcaaggccgatccgtgggcagatatggctcgaatgaatcagcgcctgtcgccaaaaata
cttaaggcgttgaatattatttaa

All links

Pathway (4)   
   KEGG PATHWAY (4)   
Chemical reaction (1)   
   KEGG ENZYME (1)   
Genome (1)   
   KEGG GENOME (1)   
Gene (5)   
   KEGG ORTHOLOGY (1)   
   NCBI-Gene (1)   
   NCBI-GI (1)   
   JGI-AEX (1)   
   OC (1)   
Protein sequence (2)   
   UniProt (1)   
   RefSeq(pep) (1)   
Protein domain (7)   
   Pfam (7)   
All databases (20)   

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