KEGG   Asticcacaulis excentricus: Astex_1372
Entry
Astex_1372        CDS       T01378                                 
Name
(GenBank) DNA ligase D
  KO
K01971  bifunctional non-homologous end joining protein LigD [EC:6.5.1.1]
Organism
aex  Asticcacaulis excentricus
Pathway
aex03450  Non-homologous end-joining
Brite
KEGG Orthology (KO) [BR:aex00001]
 09120 Genetic Information Processing
  09124 Replication and repair
   03450 Non-homologous end-joining
    Astex_1372
 09180 Brite Hierarchies
  09182 Protein families: genetic information processing
   03400 DNA repair and recombination proteins [BR:aex03400]
    Astex_1372
Enzymes [BR:aex01000]
 6. Ligases
  6.5  Forming phosphoric-ester bonds
   6.5.1  Ligases that form phosphoric-ester bonds (only sub-subclass identified to date)
    6.5.1.1  DNA ligase (ATP)
     Astex_1372
DNA repair and recombination proteins [BR:aex03400]
 Prokaryotic type
  DSBR (double strand breaks repair)
   NHEJ (non-homologous end-joining)
    Two-component NHEJ DNA repair complex
     Astex_1372
SSDB
Motif
Pfam: LigD_Prim-Pol LigD_N DNA_ligase_A_C DNA_ligase_A_M RNA_ligase DNA_primase_S Caerin_1
Other DBs
NCBI-ProteinID: ADU13042
UniProt: E8RPE4
Position
1:1474686..1477229
AA seq 847 aa
MGLDLYNKKRDFAKTAEPEGKPGRKSGQRFLIQKHDARRLHYDFRLELDGVLKSWAVTRG
PSPNPQDKRLAVEVEDHPVAYGTFEGIIPKGQYGGGTVMMWDEGTWEPLDDPHKGLKAGS
LKFVLHGKRLSGEWALVRMKPRPKGPDRANWLLIKHDDAAARDDAAEAWLETQATSITTG
RRMEEIATNTQRVWTSRTRDEPPKRKQSKSMLEFIEPELATLAVAVPKGKDWVHEIKFDG
YRTQALIENGEVRLLTRTGLDWTHRFRPLPDYLAQMPVTSAILDGEIVAVDEGGRADFKT
LQATLAGEADVPLQFYVFDLLHSDGEDLRALPLVSRKARLQRLFNGNHFGGRVHYSEHFT
KDAADLKDRLCALDQEGLICKRANAPYHSGRNRAWLKVKCHKRQEFVIGGFTLPKAGSKG
IGALLIGYFQEGRLTYAGKVGTGFTLDSAIDLRRRLDLIAQKYHPFSDIPPEFKRGAHWV
APHLVAEVQFGEWTSDGRLRHPSFQGLREDKPPQDIHRDRPLSPTEVRKAEDVPAARKPK
RRAPASEKSPTDVVGGVAISSPDRVVFPGTDITKKDVAEYYLSVADHILPHIAGRPISTI
RCPQGIGGQCFFQRHLTQAAIPHVNDTGLPVNGREDDYIMITDAHGLISLMQWGVMEIHP
RGCMATTPNRPDRLIFDLDPDPEADWADVVAGAAEVRERMTEFDLQSFLKTTGGKGLHVV
IPIQPQYDWSAIKAFTRAVAESMTHDSPRRFVAQASKSKRKGRVFIDYLRNDFTATAVAP
YAVRARPGAPVAMPIDWKALSRDLDPAGFTLENTPAHLGRRKADPWADMARMNQRLSPKI
LKALNII
NT seq 2544 nt   +upstreamnt  +downstreamnt
atgggtctcgacctatataacaaaaagcgcgactttgccaaaaccgccgagccggagggc
aagccgggacgtaagagcggccaacgcttcttgatccagaagcacgatgccaggcgcctg
cactatgatttccgacttgagctggacggggtgctgaaatcgtgggcggttactcgcggc
cccagcccaaacccgcaggacaagcgactggcggttgaggtggaggaccaccccgtcgcc
tacggaacctttgagggcatcattccaaagggccagtacggtggcgggacggtgatgatg
tgggacgaagggacttgggaaccattggacgacccgcataaggggctgaaggcgggcagt
ctcaaattcgtactccacggcaagcggctcagcggcgaatgggcactagtgcgcatgaag
ccacgaccaaaaggccctgatcgcgccaactggttgctgatcaaacacgatgatgcggcg
gcacgcgacgatgcggccgaggcgtggctggaaacccaggcgaccagcatcaccacggga
cgtcgaatggaggagatcgccacgaacacccaacgtgtttggacatcacgaaccagggac
gagccgccgaaacgcaagcagtccaaatcaatgcttgaatttatagagccggagttggca
accctcgccgtcgcggtccccaaaggtaaggactgggtgcatgagatcaagttcgatggt
taccgaacgcaggccctgatcgaaaatggcgaggtgcgacttctgacacgcacgggcctg
gactggacgcaccgctttcgtccactgcctgactatttggcgcagatgccggtcaccagc
gctatacttgatggtgagatcgtcgccgtggacgaggggggccgtgcggatttcaagacc
ctccaggccaccctggccggagaagccgatgtgccattgcaattttatgtcttcgatctt
ctgcacagcgacggcgaggacttgcgcgcccttccgctcgtgtcacgtaaggccagactg
caaaggctgtttaatggcaatcatttcggcggacgtgttcactacagcgaacattttacg
aaggatgccgctgatctgaaggaccggctctgcgcgttggatcaggaaggcctgatctgt
aaacgcgccaatgcgccttaccactcagggcgcaaccgtgcatggctgaaggtcaagtgc
cacaagcggcaggaattcgttatcggtgggttcaccctccccaaggccggcagtaagggg
attggggctttgctgatcggctattttcaggagggccgcctgacctatgccggtaaggtg
gggacgggttttactctcgacagcgccatcgacctgcgccgcagactggacctgatcgct
caaaaatatcatccgttcagtgatattccgccagaatttaaacgcggggcgcattgggtc
gcgccgcaccttgtcgccgaggtgcagttcggcgaatggacttcagatggccgcttgcgc
cacccctcgtttcaaggcctgcgtgaagacaagccgccgcaggacatccaccgcgaccgc
ccactcagcccaactgaagtgcgcaaagccgaggacgtacctgcggctcgcaagcccaag
cgccgggcccccgcatcagaaaaatccccgacagacgtggtcggtggggtcgcgatctcg
tcgccagaccgcgtcgtttttcccggcacggatatcaccaagaaggacgtggctgagtat
tatctcagcgtcgccgaccatatcctgccgcacattgccgggcgtcccatctcaacgatc
cgctgcccacaaggcattggcggacaatgttttttccaacgccacctcacccaggccgcc
atcccgcacgtcaacgataccggtcttccggtcaatggccgcgaagacgattacataatg
attacggacgctcacggcctgatcagcctgatgcaatggggcgtgatggagatacacccc
cggggctgcatggccaccacgcccaaccgtcccgaccgcctgatcttcgatctcgacccc
gatccggaagcggactgggccgacgtggtggccggggcggctgaggtgcgcgagcgtatg
accgagttcgacctccagagtttcctcaaaaccacgggtggcaagggattgcacgtggtc
atccctattcaaccccagtacgactggagcgccatcaaagcctttacgcgtgccgtggcg
gaatccatgacgcacgacagcccgagacgctttgtggcgcaagcatcaaaatccaagcgc
aaaggccgagtctttatcgattacctgcgcaatgacttcaccgccaccgccgtggctccc
tatgctgtccgcgcgcgtcccggtgcgcccgtggcgatgccgatagattggaaggcactc
agccgcgacctcgatccggcaggtttcaccttggagaacacacctgctcatctcggacgg
cgcaaggccgatccgtgggcagatatggctcgaatgaatcagcgcctgtcgccaaaaata
cttaaggcgttgaatattatttaa

  All links  
Ontology (3)   
   KEGG BRITE (3)   
Pathway (1)   
   KEGG PATHWAY (1)   
Chemical substance (5)   
   KEGG COMPOUND (5)   
Chemical reaction (2)   
   KEGG ENZYME (1)   
   KEGG REACTION (1)   
Genome (1)   
   KEGG GENOME (1)   
Gene (14)   
   KEGG ORTHOLOGY (1)   
   RefGene (11)   
   NCBI-PROTEINID (1)   
   OC (1)   
Protein sequence (1)   
   UniProt (1)   
Protein domain (7)   
   Pfam (7)   
All databases (34)   

Download RDF
DBGET integrated database retrieval system