KEGG T01595: Acife

Acidithiobacillus ferrivorans: Acife_0111

Entry

Acife_0111 CDS T01595

Definition

exodeoxyribonuclease V subunit alpha

Orthology

K03581

exodeoxyribonuclease V alpha subunit [EC:3.1.11.5]

Organism

afi Acidithiobacillus ferrivorans

Pathway

afi03440

Homologous recombination

Class

Genetic Information Processing; Replication and repair; Homologous recombination [PATH:afi03440]

SSDB

Motif

Pfam:

AAA_30 UvrD_C_2 AAA_19 Viral_helicase1 Helicase_RecD AAA_11 AAA_22 PhoH DUF2075 PIF1 UvrD-helicase ResIII Mg_chelatase AAA_24 AAA_25 AAA AAA_17 AAA_28 AAA_18

Other DBs

NCBI-GI:

NCBI-GeneID:

JGI:

UniProt:

Position

complement(127472..129412)

AA seq 646 aa
MTSAMMDQLRSWTEEGWLRPLDLAFAQFLIRLDPQAPALLPLAGALLARLEGEGHPCVAL
DDFLSAPERFLDWPAPELATLATALGYWPHAAAWTETLAQSLCVQVTERNISDPANSAET
PLVLSATRLYLRRYWRDQQFIAETLRQRAQQRVADTAKPEALKPWLEQLFPAPDETRNEL
PWQKIACALALRSHFGIITGGPGTGKTYTAARLMTLLMATSSTALRIVLAAPTGKAAVRI
DESLQSAVSTLPQLGPGPDMAAAFARLRPARTLHSLLGARPDRRRFRHNAANPLELDVLV
VDEASMIHQEMMAALLRALPPTARLILLGDQDQLASVEAGAVLAEICQGSGSYDTETCHY
LQASCGATPQPNDSGTSPLTASIVRLQRSHRFNAEIGALADAVHGGHPETAIRILQAAQT
STLAWQSAPAIHQILDLAGTEIAYGRVWQAAGQPPPKDPQQHSAWVKAILKDYADFRILC
ALRQGPWGVTGINRAIEDYLQRQGILQSRGLWYVGRPALVTRNDSGLGLSNGDIGIALPD
PDRRMRVYFPNSDGPPRAILPSRLNHSESAWAMTVHKAQGSEFAHTVLILPPEDSPVLSR
ELLYTAITRARICFTLIAPRARLENAIQRQTRRMSGLHAALRNARR

NT seq 1941 nt +upstreamnt +downstreamnt
atgacctcagccatgatggaccaactccgcagctggactgaggaaggctggctacgcccc
ctcgacctcgcctttgcgcagttcctcatccgcctggacccgcaggccccggccctcctg
cccttggcgggtgccctcctcgcgcgcctcgagggggaagggcacccctgcgtcgcgcta
gatgacttcctcagcgcgcccgaacgcttcctggactggcccgcgccggagctcgccacg
ctggcaaccgcgctcggttactggccccacgccgccgcatggacagaaaccctcgcccag
agcctctgcgtgcaggtcaccgagcgcaacatatccgacccggcaaacagcgcagaaaca
cctctggtcctcagtgccacccgcctttatttgcgccgctactggcgcgaccagcaattc
atcgccgaaactctgcgccagcgtgcccaacagcgtgtcgccgataccgccaagcccgag
gccttaaaaccctggctggagcagcttttccccgcacctgacgaaacccgcaacgagctc
ccctggcaaaaaatcgcctgcgccctcgccctgcgcagtcacttcggcatcatcaccggc
ggccccggcaccggcaaaacctacaccgcagcgcgcctcatgaccttgctcatggcgacc
agcagcaccgctctgcgcatcgtcctcgccgcccccaccggcaaggccgccgtgcgcatt
gacgaatccctgcagagcgccgtcagcacccttccgcaactgggcccgggacccgatatg
gccgccgccttcgcccgcctgcgtccggcgcgcaccctgcacagcctgctcggcgcccgt
cccgaccgccgccgctttcgccacaatgccgccaatcccctcgaactcgacgtactggtg
gtggatgaagcctccatgatccatcaagagatgatggccgccctgctccgcgcgctaccg
cccacggcccgcctcattctcctcggcgaccaggaccagctcgcctccgtcgaagcgggc
gccgtgctggccgagatctgccaaggcagcggtagctacgataccgagacctgccactat
ctgcaggccagttgtggtgccacaccgcagcccaacgacagcggcaccagcccccttaca
gcaagcatcgtccgcctgcaacgcagtcaccgcttcaacgccgaaatcggcgctttggcg
gatgccgtccacggcggtcaccccgaaaccgctatccgcatcctgcaagctgcgcagacc
agcaccctcgcctggcaatccgcccccgccatccaccagatactggatctcgccggcact
gagatcgcctatggccgcgtctggcaagcggcgggacagccgccgccaaaagacccgcaa
caacatagcgcgtgggttaaggccatcctcaaagactatgccgatttccgcatcctctgc
gccttgcgccaaggcccttggggcgtcaccggcatcaaccgcgccattgaagactatctg
caacgccagggcatcttgcagagccgcggcctttggtatgtcggccgccccgccctcgtc
acccgcaacgactccggcctcggtctcagcaatggcgatatcggcatcgccctgcccgac
ccggataggcgtatgcgcgtctattttcccaacagcgacggcccgccccgtgccatcctt
cccagccgtctcaaccacagcgaaagcgcttgggccatgaccgtccacaaggcgcagggc
tccgagttcgcccacaccgtactcatccttccgccagaagacagcccagtgctgagccgc
gaactgctctacacggccatcacccgggcccgcatctgcttcaccctcatcgccccccgc
gcgcgcctggaaaacgccattcagcgccagacgcggcgcatgagcgggctacatgcggcc
ttgcgcaatgccagacgttga

All links

Pathway (1)   
   KEGG PATHWAY (1)   
Chemical reaction (1)   
   KEGG ENZYME (1)   
Genome (1)   
   KEGG GENOME (1)   
Gene (5)   
   KEGG ORTHOLOGY (1)   
   NCBI-Gene (1)   
   NCBI-GI (1)   
   JGI-AFI (1)   
   OC (1)   
Protein sequence (2)   
   UniProt (1)   
   RefSeq(pep) (1)   
Protein domain (19)   
   Pfam (19)   
All databases (29)   

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