KEGG T01595: Acife

Acidithiobacillus ferrivorans: Acife_0728

Entry

Acife_0728 CDS T01595

Definition

RecD/TraA family helicase

Orthology

K03581

exodeoxyribonuclease V alpha subunit [EC:3.1.11.5]

Organism

afi Acidithiobacillus ferrivorans

Pathway

afi03440

Homologous recombination

Class

Genetic Information Processing; Replication and repair; Homologous recombination [PATH:afi03440]

SSDB

Motif

Pfam:

AAA_30 HHH_4 UvrD_C_2 AAA_19 HHH_5 AAA_11 Viral_helicase1 Helicase_RecD HHH_2 AAA_29 DUF258 T2SE NTPase_1 AAA_16 AAA PIF1 AAA_22 AAA_28 MobB cobW AAA_17 PhoH NACHT IstB_IS21 UvrD-helicase ABC_ATPase MMR_HSR1 ABC_tran AAA_25 AAA_18 AAA_14 DUF2075 Arch_ATPase AAA_10 DEAD ArgK UvrD_C AAA_23 ATP_bind_1 AAA_3 Zeta_toxin SMC_N

Other DBs

NCBI-GI:

NCBI-GeneID:

JGI:

UniProt:

Position

750491..752674

AA seq 727 aa
MAKPERQKQDTPNELLGGLIERVTFHNDGSGFCVLRIKARGHKELVTVVGHAAAVTAGEW
ITASGLWITDRDHGLQFKAAFLKISAPTSLDGIEKYLGSGMIRGIGPVYAKKLVKAFGDQ
VFTVIEETPERLAEVEGIGPIRRERMVSAWADQKVIREIMLFLHTHGVGTARAVRIFKTY
GTDAVRVMTENPYRLARDIHGIGFKTADAIAMKMGIEPHAPIRVRAGISYALMEARDEGH
CGLPHEELIPLAEKLLEVPTGAIESAIQEELREGAIIADQVQDADCVFLAPLYRNEQGIA
SLLKHLRTGKAPWAGIAADAAIDWVQKRLNIDLADSQQSAIRMVLQEKVALITGGPGVGK
TTLVNAILNILDAKKLRIALAAPTGRAAKRMSETTGKEAKTIHRLLEIDPQGGGFKRKED
YTLDIDLLVLDECSMIDVPLMHAVLKALPSQAGLLMVGDPDQLPSVGPGQVLADLIAAKT
IPEVHLTEIFRQAAQSRIIQAAYQINAGHTPDLRNPEGLSDFYYIAADDPAEAAEKLVKL
VTTHIPRRFGLDPLHDIQVLCPMNRSALGARALNEALQTALNGESTPTIEKFGRRFAPGD
KVMQIQNDYEKEVFNGDIGFVQGVDVEEGTLTVDFEGREVSYVFGELDLLQPAYAITVHK
SQGSEYPAVVIPMSTQHYPMLQRNLLYTAVTRGKRLVVLVGQKKAVAMAARNGSGKRRWS
KLREWMQ

NT seq 2184 nt +upstreamnt +downstreamnt
atggctaaaccggagcgccagaagcaggatacccccaatgaactgctcggtggactgatc
gaacgggtcaccttccataacgatggaagcggcttctgtgtgctccgcatcaaagcccgt
ggccacaaggaattggtcaccgtcgtggggcatgcggcagccgtcactgcgggtgagtgg
atcacggcttcgggcctctggatcaccgatcgcgatcatggcctgcagttcaaagccgct
tttctgaaaatctccgcgccgaccagcctggatggcatcgaaaagtatctgggctccggc
atgatccggggcattggtcccgtctatgccaaaaagctcgttaaagcttttggggatcag
gtattcaccgtcatcgaagaaacaccggaacgcctggcggaagtggaaggtattggccct
attcgccgggaacgcatggtcagcgcctgggcggaccagaaagtgattcgtgagatcatg
ctgtttctgcacacccatggtgtgggtaccgcccgggcggtgcgcatcttcaaaacctac
ggcaccgatgccgttcgggtcatgacggaaaacccctatcggctggccagggatattcat
ggcatcggcttcaaaaccgctgacgccatcgccatgaaaatgggtattgaaccccatgct
cccattcgggttcgggcaggcatttcctatgccctcatggaggcacgcgacgaggggcac
tgcggattaccgcatgaggaactgatccctctggccgaaaagttgctggaagtcccgaca
ggcgccatcgaaagcgccattcaggaagaattacgggaaggggcgatcatcgcagatcag
gtgcaggacgccgattgtgtcttcctggcccccctttaccgcaatgaacagggcatcgcc
agcctcctgaagcatctacgtactggcaaagccccatgggcgggcattgcggccgatgcg
gctattgattgggtgcagaagcggctgaatattgatcttgccgacagtcagcaatcagcc
atccgtatggtgttgcaggaaaaagtggcactgattaccggcggccccggtgtgggaaag
accacgctcgtgaacgcaatcctgaatatcctcgacgccaagaaactgcgcatcgcactg
gccgcccccaccggacgtgcggccaaacgcatgagtgaaaccaccggcaaagaggccaag
accatccaccggctcctcgaaatagatccccagggcggtgggttcaaacgcaaagaggat
tataccctcgatatcgatctgctggtcctggatgaatgctccatgatcgacgtgcccctg
atgcacgccgtcctcaaagccctgccatcccaggcgggactgctgatggtgggtgatccc
gatcagttgccctccgtaggcccagggcaggtgctggctgatctcattgccgccaaaacc
atccccgaagttcatctgacggaaatctttcgccaggcggcgcaaagccggatcattcag
gcggcctatcagatcaatgcagggcacacgccggacctgcgaaacccggaggggctcagc
gatttttattacatcgcagcggatgatccagcggaagcggcagaaaagctcgtcaaactg
gtcaccacccatatcccacgtcgcttcggcctggacccgctgcatgatatccaggtgctt
tgccccatgaaccgcagtgcgctgggtgcccgcgcgctcaatgaagcgctccaaacggcc
ctcaatggtgaaagcacaccaaccatcgaaaagttcggccgccgtttcgcacccggtgac
aaggtcatgcagatccagaacgattatgaaaaagaggttttcaatggcgacatcggattt
gtgcaaggtgtggacgtggaagaaggcaccctgaccgtagactttgagggcagagaggtc
agctatgtttttggggaactggatctcctgcaaccggcctatgccatcaccgtgcacaag
agtcagggttcggagtatcctgccgtggtcattcccatgagcacgcaacactaccccatg
ctgcaacgcaatctgctctatactgctgttacccggggcaagcgtctggtcgtgcttgtg
ggtcagaaaaaggctgtggccatggcggcgcggaatggatccgggaaacggcgatggtca
aaactgcgggagtggatgcagtag

All links

Pathway (1)   
   KEGG PATHWAY (1)   
Chemical reaction (1)   
   KEGG ENZYME (1)   
Genome (1)   
   KEGG GENOME (1)   
Gene (5)   
   KEGG ORTHOLOGY (1)   
   NCBI-Gene (1)   
   NCBI-GI (1)   
   JGI-AFI (1)   
   OC (1)   
Protein sequence (2)   
   UniProt (1)   
   RefSeq(pep) (1)   
Protein domain (42)   
   Pfam (42)   
All databases (52)   

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