KEGG T00810: AFE

Acidithiobacillus ferrooxidans ATCC 23270: AFE_1047

Entry

AFE_1047 CDS T00810

Definition

recombinase D

Orthology

K03581

exodeoxyribonuclease V alpha subunit [EC:3.1.11.5]

Organism

afr Acidithiobacillus ferrooxidans ATCC 23270

Pathway

afr03440

Homologous recombination

Class

Genetic Information Processing; Replication and repair; Homologous recombination [PATH:afr03440]

SSDB

Motif

Pfam:

AAA_30 UvrD_C_2 HHH_4 AAA_19 Viral_helicase1 AAA_11 HHH_5 AAA_22 Helicase_RecD IstB_IS21 PIF1 AAA_28 DUF258 NTPase_1 AAA DnaB_C AAA_16 T2SE AAA_25 Zeta_toxin UvrD_C Flavi_DEAD AAA_10 FtsK_SpoIIIE NACHT MobB AAA_14

Other DBs

NCBI-GI:

218667869

NCBI-GeneID:

7136052

UniProt:

B7J7Z5

Position

943788..945923

AA seq 711 aa
MPEMQTLIGQVTRLIFSGKADSFRIFEVQIKGANKREIVTGEWQRARVGANIEAAGTWEK
RKGKDEIQFKARSILEIVPTSADSILSWLEGGAVKGIGKVSAKKLVACFGAGLLEILDQH
PERIVEAGIGKKQREKIIEGWKIASATRIIMQFLREVGIGPERSNAVWRQFKDHPAIAGQ
PAVLVARLRNNPYRLIRVRGIGFSLADQAAGKLGIRADADYRVDAGIEHTLQTRTEDGHV
WTPEPTLLGLCKELLGVSQEKIVARIQVMQEAQQIATELGAPNRFASVRLSRMEISLAAK
IRSLSGPAPKKTMRFPAGFVPDPTQIEALNQISDRKLAILAGGPGMGKTTLLKTCAQSAV
ASGMRVALCAPTGRAAKRMNEATGMEAKTIHRLLEMKRGGLAERNRDNPIEADWIIVDEV
SMLDMELAWKLFDAIPARARVLLVGDPDQLPSVGPGQVLADLIACGKVTVARLSKIFRQQ
AGSGIPVMATQVIQGVVPNLDPDSSDCPFVDAECIGEESEEATAVVVRRIVQESEKLGSR
MQALAPMRNGPLGTLKLNQALREAFNPDAGQPHRGRFRLGDWVIQTRNNYDLDVYNGDLG
TVVAIEEGDEQAVVVDFEDRVVRYEDNEDLRDLDHAYCLTIHKSQGGQFPGVAMVATTAH
FVMLKRNLLYTGMTRAEKHLLLISTKRALQIACKKSGIEKRDTLLAQRIGG

NT seq 2136 nt +upstreamnt +downstreamnt
atgcccgaaatgcagacgctcatcggccaggtcacccgccttatcttctcaggcaaggcg
gattcctttcgcatttttgaggtgcagatcaagggcgcgaacaagcgcgagattgtcacc
ggcgagtggcaacgggcccgtgtgggcgcgaacatcgaagcggcgggaacctgggagaag
cgcaaaggaaaggatgaaattcagttcaaagcccgttctattctggaaatcgtaccgaca
agcgccgacagcattttgtcttggcttgagggcggggcggtaaagggcattggcaaggtg
tccgcgaaaaagctggtggcctgcttcggcgctggattgctggagattctggaccagcat
ccagaacggatcgtggaggccggtatcggcaagaaacagcgcgaaaagattatcgagggc
tggaaaatcgcgtccgccaccagaatcatcatgcagtttcttcgggaagtcgggattggc
ccggaacgctccaacgcggtatggcgccagttcaaggatcaccccgccatcgctggccag
ccggcggtgctggtggcccggctgcgcaacaacccctatcgcctgatccgcgtgcgcggc
atcgggttctcgttggccgaccaggcggccggcaaactgggcattcgcgccgacgcggat
tatcgggtggacgcggggatcgagcacactctgcaaactcgcaccgaagacggtcacgtt
tggactcccgagccgacgttgctgggcctttgcaaagaattgctgggcgtcagccaggaa
aagatcgtggcgcgcatccaggtgatgcaggaagcacagcagatcgcgactgaactgggc
gcgcctaatcgcttcgccagcgtacgtctttccagaatggaaatttccctggcggccaag
attcgctccctgtctggtccggcgcccaagaaaacgatgcgcttccccgccggattcgtt
ccggatcccacgcaaatcgaggcgctgaaccagatcagcgatcgcaagctggcgattctg
gccggcgggccaggcatgggaaagaccaccctactcaagacctgcgcacagtcggcagtg
gcgagcggcatgagggttgctctttgcgccccaaccggccgtgcggccaaacgcatgaac
gaggcgacgggcatggaggccaagaccattcatcggctgttggagatgaagaggggtggg
ctggcggagcgtaatcgggacaaccctatcgaagcggactggatcatcgtggacgaggtc
tccatgctggatatggagttggcctggaagctgtttgacgccattccggcccgtgcccgc
gtgctgctggtcggcgatccggaccagttgccttccgtgggccccgggcaagttctggcc
gatctcattgcctgcggcaaggttacggtggccaggttgagcaagatcttccggcagcaa
gccgggtccggtattccggtgatggccacccaggtcattcagggcgtcgtgccgaacctg
gatcccgattcgtcggattgtccgttcgtggatgcagaatgcatcggggaagaaagcgag
gaggcgacagcggtggtggtgcggcgcatcgtccaagagtcggaaaaactgggcagccgc
atgcaggcgctggcgcccatgcggaacggtccgctgggcacgctgaagctcaaccaggcc
ttgcgtgaggcgttcaacccggatgccgggcagccgcaccggggccggttccggctgggg
gactgggtaattcagacgcgcaacaactacgacctggatgtctataacggcgatctgggt
accgtggtggccatagaggagggcgacgaacaggccgtggtggtggatttcgaggatcgc
gtcgtccgctatgaggataatgaggacttgcgggatcttgatcacgcgtattgcctgacc
atccacaagtcccagggtggccagtttcccggggtcgccatggtggccactaccgcgcac
tttgtcatgctcaagcgcaatctgctgtacacgggcatgacgcgggccgagaagcatctg
ctgctgatctcgacgaaaagggccctgcagatcgcgtgtaagaaatccggcattgagaag
cgggacacgctgttggcccagaggatcggcggatga

All links

Pathway (1)   
   KEGG PATHWAY (1)   
Chemical reaction (1)   
   KEGG ENZYME (1)   
Genome (1)   
   KEGG GENOME (1)   
Gene (4)   
   KEGG ORTHOLOGY (1)   
   NCBI-Gene (1)   
   NCBI-GI (1)   
   OC (1)   
Protein sequence (2)   
   UniProt (1)   
   RefSeq(pep) (1)   
Protein domain (27)   
   Pfam (27)   
All databases (36)   

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