KEGG T00810: AFE

Acidithiobacillus ferrooxidans ATCC 23270: AFE_2933

Entry

AFE_2933 CDS T00810

Gene name

recD

Definition

exodeoxyribonuclease V subunit alpha (EC:3.1.11.5)

Orthology

K03581

exodeoxyribonuclease V alpha subunit [EC:3.1.11.5]

Organism

afr Acidithiobacillus ferrooxidans ATCC 23270

Pathway

afr03440

Homologous recombination

Class

Genetic Information Processing; Replication and repair; Homologous recombination [PATH:afr03440]

SSDB

Motif

Pfam:

AAA_30 UvrD_C_2 AAA_19 Viral_helicase1 Helicase_RecD AAA_11 PhoH AAA_22 UvrD-helicase DUF2075 PIF1 Mg_chelatase ResIII AAA_25 AAA_28 KaiC

Other DBs

NCBI-GI:

218665442

NCBI-GeneID:

7134529

UniProt:

B7J9Q7

Position

2617837..2619777

AA seq 646 aa
MTSLMIDQLRAWTSAGWLRPLDLAFAQFLIRLDPQAPALLPLAGALLARLEGEGHTCIAL
EDFLGAPERFLDWPAPGHAMLATALGDWPHAAQWTETLARSRCVQVTERNAPVPANGAET
PLVLSAARLYLRRYWRDQQFIAEALRQRAQQRVADAANPEALRPWLEQLFPASDEPGDAL
PWQKIACALALRSHFSIITGGPGTGKTYTAARFMALLMATSSTPLRIVLAAPTGKAAVRI
DESLQSAVGTLPQLSQIPDMTAAFARLRPARTLHSLLGARPDSRRFRHDAANPLELDVLV
VDEASMIHQEMMAALLRALPPAARLILLGDQDQLASVEAGAVLAELSLGSGKYDAETCHY
MQASCGAAPRPGDNGPSPLAANIIRLQRSHRFNAEIGALADAVHGGHPETAVRILQTAHT
GTLAWQPAPAIHRILELARPESAYGRVWQAAGQPPPKDRQQHSAWVKTILNDYAGFRILC
ALRQGPWGVTGINRAIEDYLQRQGILQSRGLWYAGRPTLVTRNDPNLGLSNGDIGIALPD
PDKRLRVYFPNSEEAPRAILPSRLNHTESAWAMTVHKAQGSEFAHTVLILPPEDSPVLSR
ELLYTAITRARKCFTLIAPRERLENAIQRQTRRMSGLHAALYDPRR

NT seq 1941 nt +upstreamnt +downstreamnt
atgaccagcctcatgatcgaccaactccgcgcctggaccagcgccggctggctacggccc
ctcgaccttgccttcgcgcagttcctcatccgcctggacccgcaggccccggccctcctg
cccctggcgggcgctctcctcgcccggctggagggagaaggccacacctgcatcgcgctg
gaagacttcctcggcgcacccgaacgcttcctggactggcctgcgccggggcacgccatg
ctggcaaccgcactcggtgactggccccatgccgcccaatggacagaaaccctcgcccgg
agccgctgcgtacaggtcaccgagcgcaacgcccccgtcccggcaaacggcgcagaaacg
cccctggtcctcagtgccgcccgcctctatttgcgccgctactggcgtgaccagcaattc
atcgccgaggccctgcgccagcgcgcccaacagcgcgtcgccgatgccgccaaccccgag
gcattaagaccctggctggagcaacttttcccggcgtctgacgaacccggcgacgcactc
ccctggcaaaaaatcgcctgcgccctcgccctgcgcagccacttcagcatcatcaccggc
ggccccggtaccggcaaaacctacaccgcagctcgcttcatggccttgctcatggcgacc
agcagcacacccctgcgcatcgtgcttgccgcccccaccggcaaggccgccgtgcgcatc
gacgaatccctgcagagcgcggtcggcactcttccgcaattgagccaaatacccgatatg
actgccgccttcgcccgcctgcgtccggcgcgcaccctgcacagcctgctcggcgcccgc
cccgacagtcgtcgctttcgccacgatgctgccaaccccctcgaactggacgtactcgtg
gtggacgaagcctccatgattcatcaggagatgatggccgccctgctccgcgccctgccg
cctgcggcccgcctcatcctcctcggcgatcaggaccagcttgcctccgtcgaagcgggc
gcggtgctggccgaactcagtctcggcagcggtaaatatgatgccgagacctgccactat
atgcaggccagttgcggtgccgcgccgcggcccggcgacaacggccccagcccccttgcc
gcaaacatcatccgcctgcaacgcagccatcgcttcaatgcagaaatcggcgcgctggcg
gatgccgtgcatggcggccaccccgaaaccgccgtccgcatcctgcaaacggcgcacact
ggcactctcgcctggcaacccgcccctgccatccaccggatactggaactggcccgcccg
gaaagcgcctatggtcgggtctggcaagccgcgggccagccgccacccaaagaccggcaa
caacatagcgcatgggttaaaaccatcctcaacgactacgctggcttccgcatcctctgt
gccctgcgccaaggcccctggggcgttaccggcatcaaccgcgccatcgaagactacctg
cagcgccagggcatcctgcagagccgcggcctttggtatgccggccgccccaccctcgtc
acccgcaatgaccccaacctcggtctcagcaatggcgacatcggcatcgccctgcccgac
ccggataaacgcctgcgcgtctacttccccaatagcgaagaggccccccgcgccatcctc
cccagccgcctcaaccacaccgaaagcgcctgggccatgaccgtccacaaggcacagggt
tccgagttcgcccacaccgtcctcatccttcctccggaagacagccccgtcctcagccgc
gaactgctctacacggccatcacccgcgcccgcaaatgcttcaccctcatcgccccccgg
gagcgactggaaaacgccattcagcgccagacgcggaggatgagcggattacacgcggcg
ttatatgatcccaggcgctga

All links

Pathway (1)   
   KEGG PATHWAY (1)   
Chemical reaction (1)   
   KEGG ENZYME (1)   
Genome (1)   
   KEGG GENOME (1)   
Gene (4)   
   KEGG ORTHOLOGY (1)   
   NCBI-Gene (1)   
   NCBI-GI (1)   
   OC (1)   
Protein sequence (2)   
   UniProt (1)   
   RefSeq(pep) (1)   
Protein domain (16)   
   Pfam (16)   
All databases (25)   

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