KEGG T00559: Anae109

Anaeromyxobacter sp. Fw109-5: Anae109_0939

Entry

Anae109_0939 CDS T00559

Definition

DNA ligase D

Orthology

K01971

DNA ligase (ATP) [EC:6.5.1.1]

Organism

afw Anaeromyxobacter sp. Fw109-5

Pathway

afw03410	Base excision repair
afw03420	Nucleotide excision repair
afw03430	Mismatch repair
afw03450	Non-homologous end-joining

Class

Genetic Information Processing; Replication and repair; Base excision repair [PATH:afw03410]
Genetic Information Processing; Replication and repair; Nucleotide excision repair [PATH:afw03420]
Genetic Information Processing; Replication and repair; Mismatch repair [PATH:afw03430]
Genetic Information Processing; Replication and repair; Non-homologous end-joining [PATH:afw03450]

SSDB

Motif

Pfam:

LigD_N DNA_ligase_A_M DNA_ligase_A_C DNA_primase_S DNA_ligase_OB_2

Other DBs

NCBI-GI:

NCBI-GeneID:

JGI:

UniProt:

Position

1065326..1067869

AA seq 847 aa
MPDRLERYRAKRDPERTPEPFGPAEAGARALDAPRLFVVQKHAARRLHWDFRLELGGTLR
SWAVPKGPSADPSDKRMAVEVEDHPIEYANFEGIIPAGNYGAGAVIVWDRGTWRPVGDPY
DGLARGKLVFQLSGHKLHGEWTLVRTRAAQGGKQQWLLLKHRGDAWAGPGRPFPEESVLS
GRLLEELAAGEGRAEAAVRAAEGLGAPRRALADADARPMLAETREGPFDAPGWLFELKYD
GYRLVARREGSRVSLRYRSGEDATALYPELAKALESWPLDAVLDGEVVVLGPDGRPSFQA
LQGRAQLARPADVARAALERPATYFVFDLLSLAGLDLRALPLVERKRLLAEVAPRLGPVR
LAEHVEARGEDLYREVRARGLEGIVAKRADAPYRAGRSAAWLKIRVERTGDFAIVGFTAP
AGARARFGALHLAVHDGEGLLYAGSVGTGFGERLLEELHARLAPRARKTPPCRGAVPRGR
GHTWVEPELVCEVRFREWTAEGLLRQPVFLRLREDKRPEEAVREVAPHEGPPPVPRPARA
ERRVEVTNGAKVWFPAEGITKAEVVDYYRAIAPFMLPYLRDRPVVLTRYPDGIDGKSFFQ
KDAPEWRPEWIRTVRIRSEEAERDLDHFLVDDADGLAWIANLGTIPLHVWASRAGALERP
DWCVVDLDPKEAPFEHVVRIARALHALCDDLGLPSYPKTTGQKGLHVLVPLGGQLTHAQS
RTLGELLARAVEGELPRLATTARALSARGGRVYLDFLQNGYGKTIAAPYAVRPRPGAPVS
TPLRWSEVTPRLDPARFTIRNVPARARRLRADPLLPVLSERPDLAAALERLRVRMGEGER
AAARRRS

NT seq 2544 nt +upstreamnt +downstreamnt
gtgcccgaccgcctcgagcgatatcgcgccaagcgcgacccggaacggacgccggagccg
ttcggcccggccgaggcgggggcacgcgcgctcgacgccccgcgcctgttcgtggtccag
aagcacgccgcccgccgcctccactgggacttccggctcgagctgggcgggacgctgcgc
tcctgggccgtccccaaggggccctccgccgacccctccgacaagcggatggcggtggag
gtggaggaccaccccatcgagtacgcgaacttcgaggggatcatccccgcggggaactac
ggcgccggcgcggtgatcgtctgggatcgcgggacctggcggccggtcggcgatccgtac
gacgggctggcgcgcggcaagctcgtcttccagctctccggccacaagctgcacggcgag
tggacgctcgtccgcacgcgcgcggcgcagggcggcaagcagcagtggctgctcctgaag
caccgcggcgacgcgtgggccggcccgggccggcccttcccggaggagtcggtgctctcc
ggccggctgctcgaggagctcgccgccggcgagggacgcgccgaggccgcggtgcgcgcg
gcggaggggctcggggccccgcggcgagcgctggcggacgcggacgcccgccccatgctc
gcggagacgcgcgaggggccgttcgacgcgccggggtggctgttcgagctcaagtacgac
gggtaccggctcgtcgcgcgtcgcgagggctcgcgcgtctcgctgcgctaccggagcggc
gaggacgcgacggcgctctacccggagctcgcgaaggcgctcgagtcctggcccctcgac
gccgtcctcgacggcgaggtggtcgtgctcgggcccgacggccgcccgtccttccaggcc
ctccagggccgcgcgcagctcgcgcgcccggcggacgtggcgcgcgccgcgctcgagcgt
cccgccacctacttcgtcttcgatctcctctcgctcgccggcctcgacctccgcgcgctc
ccgctggtggagcgcaagcgcctcctcgcggaggtcgcgccgcggctcggacccgtccgc
ctcgccgagcacgtcgaggcgcgcggcgaggacctctaccgcgaggtgcgcgcccgcggg
ctcgaggggatcgtggcgaagcgggcggacgcgccctaccgcgccggccgctccgccgcg
tggctcaagatccgggtcgagcgcacgggcgacttcgcgatcgtcggcttcaccgcgccg
gccggcgcccgcgctcgcttcggcgcgctgcacctcgccgtgcacgacggcgaggggctc
ctgtacgcgggcagcgtcgggacggggttcggcgagcggctgctcgaggagctccacgcg
cgcctcgcgccgcgcgcacgaaagacgcctccctgccgcggggcggtcccgcgcgggcgc
gggcacacctgggtcgagccggagctcgtgtgcgaggtgcgcttcagggagtggacggcg
gagggcctcctccggcagccggtgttcctgaggctgcgcgaggacaagcggccggaggag
gccgtgcgcgaggtcgcgccgcacgagggcccgccgccggtgccgcgcccggcgcgcgcc
gagcggcgcgtggaggtgacgaacggcgccaaggtgtggttcccggcggagggcatcacc
aaggccgaggtggtggactactaccgcgcgatcgcgcccttcatgctgccgtacctgagg
gaccggcccgtcgtgctgacgcgctaccccgacggcatcgacgggaagagcttcttccag
aaggacgcgccggagtggcggcccgagtggatccgcacggtgcgcatccgcagcgaggag
gcggagcgcgacctcgaccacttcctcgtcgacgacgccgacggcctcgcgtggatcgcg
aacctggggaccatccccctgcacgtgtgggcgagccgcgccggcgcgctcgagcggccg
gactggtgcgtcgtggatctcgatccgaaggaggcgccgttcgagcacgtggtgcgcatc
gcgcgggcgctgcacgcgctgtgcgacgacctcgggctgccctcgtacccgaagaccacg
gggcagaagggcctgcacgtgctcgtccccctcggcggccagctcacccacgcgcagtcc
cggacgctcggcgagctcctcgcccgcgcggtggagggggagctgccgcggctcgccacc
accgcgcgcgctctctccgcccgcggcggccgcgtctacctcgacttcctgcagaacggg
tacggcaagacgatcgccgcgccgtacgcggtccgccccaggccgggcgcgcccgtctcc
acgccgctgcgctggagcgaggtgacgcccaggctcgatcccgcgcgcttcaccatccgg
aacgtcccggcgcgcgcgaggcggctgcgcgccgacccgctgctgcccgtcctgtcggag
cggcccgacctcgccgccgcgctcgagcgcctgagggtgcgcatgggcgagggggagcgc
gccgcggcgcggcggcgctcgtag

All links

Pathway (4)   
   KEGG PATHWAY (4)   
Chemical reaction (1)   
   KEGG ENZYME (1)   
Genome (1)   
   KEGG GENOME (1)   
Gene (5)   
   KEGG ORTHOLOGY (1)   
   NCBI-Gene (1)   
   NCBI-GI (1)   
   JGI-AFW (1)   
   OC (1)   
Protein sequence (2)   
   UniProt (1)   
   RefSeq(pep) (1)   
Protein domain (5)   
   Pfam (5)   
All databases (18)   

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