KEGG   Anoxybacillus gonensis: AFK25_01375
Entry
AFK25_01375       CDS       T04000                                 
Symbol
ligA
Name
(GenBank) NAD-dependent DNA ligase LigA
  KO
K01972  DNA ligase (NAD+) [EC:6.5.1.2]
Organism
agn  Anoxybacillus gonensis
Pathway
agn03030  DNA replication
agn03410  Base excision repair
agn03420  Nucleotide excision repair
agn03430  Mismatch repair
Brite
KEGG Orthology (KO) [BR:agn00001]
 09120 Genetic Information Processing
  09124 Replication and repair
   03030 DNA replication
    AFK25_01375 (ligA)
   03410 Base excision repair
    AFK25_01375 (ligA)
   03420 Nucleotide excision repair
    AFK25_01375 (ligA)
   03430 Mismatch repair
    AFK25_01375 (ligA)
 09180 Brite Hierarchies
  09182 Protein families: genetic information processing
   03032 DNA replication proteins [BR:agn03032]
    AFK25_01375 (ligA)
   03400 DNA repair and recombination proteins [BR:agn03400]
    AFK25_01375 (ligA)
Enzymes [BR:agn01000]
 6. Ligases
  6.5  Forming phosphoric-ester bonds
   6.5.1  Ligases that form phosphoric-ester bonds (only sub-subclass identified to date)
    6.5.1.2  DNA ligase (NAD+)
     AFK25_01375 (ligA)
DNA replication proteins [BR:agn03032]
 Prokaryotic type
  DNA Replication Elongation Factors
   Elongation factors (bacterial)
    Other elongation factors
     AFK25_01375 (ligA)
DNA repair and recombination proteins [BR:agn03400]
 Prokaryotic type
  SSBR (single strand breaks repair)
   BER (base exicision repair)
    DNA ligase
     AFK25_01375 (ligA)
   NER (nucleotide excision repair)
    GGR (global genome repair) factors
     AFK25_01375 (ligA)
   MMR (mismatch excision repair)
    DNA ligase
     AFK25_01375 (ligA)
  DSBR (double strand breaks repair)
   NHEJ (non-homologous end-joining)
    SHDIR (short-homology-dependent illegitimate recombination)
     RecET pathway
      AFK25_01375 (ligA)
SSDB
Motif
Pfam: DNA_ligase_aden DNA_ligase_OB HHH_2 BRCT HHH_5 DNA_ligase_ZBD PTCB-BRCT HHH BRCT_2 5_3_exonuc RNA_pol_A_CTD HHH_3 HHH_8 RNA_ligase zf-NADH-PPase
Other DBs
NCBI-ProteinID: AKS37234
Position
244220..246226
AA seq 668 aa
MKNVTQHDVEKQIAELRQQIEKYNYEYYVLDKPSISDAEYDELMRKLMELEEQYPQYKTT
DSPSQRVGGAPLEGFAKVLHRVPMLSLSNAFHEGDLRDFDRRVRQEVGDVRYVCELKIDG
LAVSLRYENGYFVQGATRGDGTTGEDITENLKTIRSLPLRLRKQVTIEVRGEAYMPRQSF
EKLNEKRKMNGEELFANPRNAAAGSLRQLDPKVVASRQLDIFVYHVVNAEELGFVSHSES
LHYLDELGFKTNPARQVCETIDDVLSYIEQWHERRASLPYDIDGIVIKVDAFAQQKQLGA
TAKSPRWAIAYKFPAEEVVTQLVDIELSVGRTGVVTPTAILQPVRVAGTIVQRASLHNED
YIREKDIRLGDYVVIKKAGDIIPEVVRSLPERRTGQEKPFDMPTHCPACASELVRLDDEV
ALRCVNPQCPAQIREGLTHFVSRQAMNIDGLGEKVIAQLFEHGLVRSVADLYTLTKDKLV
ALERMGEKSATNLLQAIETSKQNSLERLLFGLGIRHVGAKAAKTLAEHFETMERLQQATK
EELTAIHEIGEKMAESIVTYFSKEEVKQLLERLRAYGVNMTYKGAKRTADISSTFAGKTF
VLTGTLQSMSRSEAKEKIEALGGKVTGSVSKKTDVVVVGEDAGSKLEKAKQLGITIWDEA
RFLQEIQQ
NT seq 2007 nt   +upstreamnt  +downstreamnt
atgaagaatgtgacacaacacgacgttgaaaagcaaattgctgaattgcgccaacaaatt
gagaaatataactatgaatattacgtattagacaaaccttctatttctgatgctgaatac
gatgaattaatgagaaaattgatggagttagaggagcaatatccacaatataaaacaacg
gattctccgtcgcaacgcgttggcggagcgccgttagagggatttgccaaggtgctccac
cgcgtgccgatgcttagtttaagcaacgcttttcatgaaggagatttacgagattttgac
cgacgtgtacgccaagaagttggtgacgtccgttacgtatgtgaattaaaaattgacggt
ttagccgtatcgctccgttatgaaaatggttatttcgtacaaggagcaacgcgcggagat
gggacgacaggggaagatattacggaaaatttaaaaaccattcgctcattgccgcttcga
ttgcgtaaacaagtgacgattgaagtgcgtggggaagcatatatgccacgccaatcattt
gaaaagttaaatgaaaagcgcaaaatgaacggagaagaattgtttgctaatccgcgcaat
gcggcagccggatcgcttcgtcagcttgatccaaaagtcgtcgcttcccgtcagttagat
atatttgtatatcatgtcgtcaatgcagaagagctcggattcgtctcccatagtgagtcg
cttcattatttagatgagctcggatttaaaacaaatccggctcggcaagtatgcgaaacg
atagatgacgtattgtcttacattgaacagtggcatgaacgacgcgcgtcattgccgtat
gatattgatggaatcgtcattaaagtagatgcgtttgcgcaacaaaagcaactaggagcg
acagcgaaaagtccacgctgggccattgcttataaatttccggctgaagaagttgtgaca
caacttgttgatattgagctaagtgtcggtcgaacaggtgtggtcactccgacagctatt
ttacagcctgtgcgtgtggcaggcacgattgtacagcgtgcatcgctgcataatgaagac
tacattcgtgaaaaagatattcgtcttggcgattacgtcgttattaaaaaagcgggcgat
attattccagaggttgtacgttcattgccagagcggcgaacaggacaggagaagcctttc
gatatgccgacgcattgcccagcatgcgcaagcgaactcgttcgtcttgatgatgaagtc
gcgcttcgctgtgtcaatccgcaatgtccggcacaaattcgagaggggcttactcatttc
gtttcacgccaagcgatgaatattgacggattaggcgaaaaagtgatcgctcaactattt
gaacacggtctcgttcgtagtgtggcggatttgtatacgttaacgaaagacaaacttgtc
gcgttagaacgaatgggagaaaaatcagcaacaaacttactgcaagcgattgaaacatcg
aaacaaaattcactggagcgcttattgttcgggcttggtattcgccacgttggcgcaaaa
gcggcaaaaacgttagcggaacattttgaaacgatggaacgtcttcaacaagcgacgaaa
gaagaactaacagccattcatgaaattggtgagaaaatggcggaatcgattgtgacgtat
ttttcaaaagaagaagtaaagcagttgcttgaacgcttgcgggcgtatggtgtcaatatg
acatataaaggtgcgaaacggacagcggacataagctcaacgtttgctgggaagacgttt
gttttaacaggcacgttacaatcgatgtcgcggagcgaagcaaaagaaaaaattgaagca
ctaggtggaaaagtgacaggaagtgtcagtaaaaaaacagacgttgtcgttgtaggtgaa
gatgctggatcaaaattagaaaaagcgaaacagcttggcattacaatttgggatgaagcg
cgttttcttcaagaaatacaacaataa

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Ontology (4)   
   KEGG BRITE (4)   
Pathway (4)   
   KEGG PATHWAY (4)   
Chemical substance (5)   
   KEGG COMPOUND (5)   
Chemical reaction (2)   
   KEGG ENZYME (1)   
   KEGG REACTION (1)   
Genome (1)   
   KEGG GENOME (1)   
Gene (3)   
   KEGG ORTHOLOGY (1)   
   NCBI-PROTEINID (1)   
   OC (1)   
Protein domain (15)   
   Pfam (15)   
All databases (34)   

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