KEGG   Aeromonas hydrophila subsp. hydrophila ATCC 7966: AHA_0924
Entry
AHA_0924          CDS       T00424                                 
Symbol
hfq
Name
(GenBank) RNA chaperone Hfq
  KO
K03666  host factor-I protein
Organism
aha  Aeromonas hydrophila subsp. hydrophila ATCC 7966
Pathway
aha02024  Quorum sensing
aha03018  RNA degradation
Brite
KEGG Orthology (KO) [BR:aha00001]
 09120 Genetic Information Processing
  09123 Folding, sorting and degradation
   03018 RNA degradation
    AHA_0924 (hfq)
 09140 Cellular Processes
  09145 Cellular community - prokaryotes
   02024 Quorum sensing
    AHA_0924 (hfq)
 09180 Brite Hierarchies
  09182 Protein families: genetic information processing
   03019 Messenger RNA biogenesis [BR:aha03019]
    AHA_0924 (hfq)
   03036 Chromosome and associated proteins [BR:aha03036]
    AHA_0924 (hfq)
Messenger RNA biogenesis [BR:aha03019]
 Prokaryotic type
  Bacterial mRNA degradation factors
   Other RNA degradation factors
    Chaperones
     AHA_0924 (hfq)
Chromosome and associated proteins [BR:aha03036]
 Prokaryotic type
  Nucleoid associated proteins
   Other nucleoid associated proteins
    AHA_0924 (hfq)
SSDB
Motif
Pfam: Hfq LSM
Other DBs
NCBI-ProteinID: ABK37341
UniProt: A0KGS1
Position
999328..999591
AA seq 87 aa
MAKGQSLQDPFLNALRRERIPVSIYLVNGIKLQGQIESFDQFVILLKNTVSQMVYKHAIS
TVVPARAVNHHQHAPGAAGEEQGEAEA
NT seq 264 nt   +upstreamnt  +downstreamnt
atggctaaggggcaatctctccaagacccgtttttgaatgcgctgcgccgtgagcggatt
cctgtttctatctatttggtgaacggcatcaaactgcagggtcagatcgaatcgtttgac
cagtttgtcattttgctgaagaacaccgtgagccagatggtctacaagcacgccatctct
accgtggtgccggcccgtgccgtcaaccaccaccagcatgcgccgggcgcggctggcgaa
gagcagggtgaagccgaggcgtga

  All links  
Ontology (3)   
   KEGG BRITE (3)   
Pathway (2)   
   KEGG PATHWAY (2)   
Genome (1)   
   KEGG GENOME (1)   
Gene (6)   
   KEGG ORTHOLOGY (1)   
   RefGene (3)   
   NCBI-PROTEINID (1)   
   OC (1)   
Protein sequence (2)   
   UniProt (1)   
   SWISS-PROT (1)   
Protein domain (2)   
   Pfam (2)   
All databases (16)   

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