KEGG   Actinoalloteichus hymeniacidonis: TL08_02910
Entry
TL08_02910        CDS       T04472                                 
Name
(GenBank) DNA-directed RNA polymerase, beta' subunit, predominant form
  KO
K03046  DNA-directed RNA polymerase subunit beta' [EC:2.7.7.6]
Organism
ahm  Actinoalloteichus hymeniacidonis
Pathway
ahm03020  RNA polymerase
Brite
KEGG Orthology (KO) [BR:ahm00001]
 09120 Genetic Information Processing
  09121 Transcription
   03020 RNA polymerase
    TL08_02910
 09180 Brite Hierarchies
  09182 Protein families: genetic information processing
   03021 Transcription machinery [BR:ahm03021]
    TL08_02910
   03400 DNA repair and recombination proteins [BR:ahm03400]
    TL08_02910
Enzymes [BR:ahm01000]
 2. Transferases
  2.7  Transferring phosphorus-containing groups
   2.7.7  Nucleotidyltransferases
    2.7.7.6  DNA-directed RNA polymerase
     TL08_02910
Transcription machinery [BR:ahm03021]
 Prokaryotic type
  Bacterial type
   RNA polymerase
    Core subunits
     TL08_02910
DNA repair and recombination proteins [BR:ahm03400]
 Prokaryotic type
  SSBR (single strand breaks repair)
   NER (nucleotide excision repair)
    TCR (transcription coupled repair) factors
     DNA-directed RNA polymerase complex (RNAP)
      TL08_02910
SSDB
Motif
Pfam: RNA_pol_Rpb1_1 RNA_pol_Rpb1_5 RNA_pol_Rpb1_2 RNA_pol_Rpb1_3 RNA_pol_Rpb1_4
Other DBs
NCBI-ProteinID: AOS61416
Position
607886..611797
AA seq 1303 aa
MLDVNFFDELRIGLATADDIRQWSYGEVKKPETINYRTLKPEKDGLFCEKIFGPMRDWEC
YCGKYKRVRFKGIVCERCGVEVTRSKVRRERMGHIELAAPVTHIWYFKGVPSRLGYLLDL
APKDLEKIIYFAAYVITSVNTELRHNDLPTLENEFGVERKRVEEKRDADIEARAQKLEAD
IAELEAEGAKSDVRRKVKEGGEREMRQLRDRAQRELDRLDEIWTTFTKLEPKQLVPDELI
YRELYDRYGDYFTGGMGAESIQSLLGTFDIAREAEILRDTIRNGKGQKKLRALKRLKVVA
AFLATGNNPQGMVLDCTPVIPPDLRPMVQLDGGRFATSDLNDLYRRVINRNNRLKRLIDL
GAPEIIVNNEKRMLQEAVDALFDNGRRGRPVTGPGNRPLKSLSDLLKGKQGRFRQNLLGK
RVDYSGRSVIVVGPQLKLHQCGLPKQMALELFKPFVMKRLVDLNHAQNIKSAKRMVERQR
GQVWDVLEEVITEHPVLLNRAPTLHRLGIQAFEPQLVEGKAIQLHPLVCEAFNADFDGDQ
MAVHLPLSAEAQAEARILMLSSNNILSPASGRPLAMPRLDMVTGIYFLTKVREGAEGEGH
AFTSPSEAIMAYDRGALSLHAKAKIRVTDRVPPRGKEPEGWEPGKTWLAETTLGRVLFND
LLPADYPFIDELLPKKKQAAIVNDLAERYPMVVVAQTLDKLKDAGFHWATRSGITISISD
VVVPANKQEILDKYELEASRIEKRYQRGALSYSERNSELVKVWQRAKDEVAEAMEKNFPE
DNPIPTIVKSGAAGNMTQVVQLAGMRGVVSNTKGEYIPRPIKANFREGLSVLEYFISTHG
TRKGLADTAIRTADSGYLTRRLVDVSQDVIIRETDCGTERGIIMPIGDDGTEGRLIRDVH
VETSVYSRSSAEDVTDEDGNVLLARGSDLGDPAIETLLSAGVSKLKVRSVLTCESAVGVC
AVCYGRSMATGKLVDIGEAVGIVAAQSIGEPGTQLTMRTFHQGGVAGDDITTGLPRVQEL
FEARIPKGKAPISEVDGRIQLEEGDRFRKITIIPDDGSEEIVHDKLSRRQWLATVQVDDS
ERPLQDGDRVTVGQQLLEGAVDPHEVLRVMGPREAQLHLVREVQKVYRTQSVSIHDKHIE
VIVRQMLRRVTVIDSGSTEFLPASWAERSVFEAANRRVVAQGGEPASGRPVLMGITKASL
ATESWLSAASFQETTRVLTDAAINGKSDKLVGLKENVIIGKLIPAGTGINRYRNIQVQPT
EEARAAAYAIPSYDDGYYTPDVFGTGTGAAVPLDDYDFGRDFR
NT seq 3912 nt   +upstreamnt  +downstreamnt
gtgctggacgtcaacttcttcgatgaactccgtatcggcctggccacggcagacgacatt
cgtcagtggtcctacggcgaggtcaagaagcccgagaccatcaactaccgcactctcaag
ccggagaaggacggtctcttctgcgagaagatcttcggtcccatgcgggactgggagtgc
tactgcggtaagtacaagcgtgtccgcttcaagggcatcgtctgtgagcgctgtggcgtc
gaggtgactcggtccaaggtccgtcgtgagcggatgggccacatcgagctggccgcaccg
gtcacgcacatctggtacttcaagggtgtgccgagccggttgggttacctgctcgacctg
gcccccaaggacctcgagaagatcatctacttcgccgcgtacgtgatcacctcggtgaac
accgaactccggcacaacgatctgcccacgctggagaacgagttcggcgtagagcgcaag
cgggtcgaggagaagcgggacgccgacatcgaggcgcgcgcgcagaagctcgaggccgac
atcgccgagctggaggccgagggcgccaagagcgacgtccgccgcaaggtcaaggagggc
ggcgagcgggagatgcgccagctccgcgaccgcgcccagcgtgagctggaccggctcgac
gagatctggacgaccttcaccaagctcgagccgaagcagctcgtgcccgatgagttgatc
taccgtgagctctacgaccgttacggtgactacttcaccggcggcatgggcgcggagtcg
atccagtccctgctggggaccttcgacatcgcccgtgaggcggagatccttcgggacacc
atccgcaacggcaagggccagaagaagctccgtgcgctgaagcggttgaaggtcgtcgcg
gcgttcctggcgaccgggaacaacccgcagggcatggtcctggactgcaccccggtgatc
ccgccggacctgcgtcccatggtccagctcgacggtggccggttcgccacctccgacctg
aacgacctctaccgtcgggtgatcaaccggaacaaccggttgaagcggctgatcgacctc
ggcgctcccgagatcatcgtcaacaacgagaagcggatgctccaggaggccgtcgacgca
ctgttcgacaacggccgccggggacgtccggtcaccggaccgggcaaccgcccgctgaag
tcgttgtccgacctcctcaagggcaagcagggtcggttccggcagaacctgctcggtaag
cgtgtcgactactcgggccgttcggtcatcgtggtcggtccgcagctcaagctgcaccag
tgcggcctaccgaagcagatggcgttggagctgttcaagccgttcgtcatgaagcggctg
gtcgacctgaaccatgcgcagaacatcaagtcggccaagcggatggtcgagcggcagcgc
ggccaggtgtgggacgtcctcgaagaggtcatcaccgagcacccggtgttgctgaaccgt
gcaccgacgctgcaccgcctcggtatccaggccttcgagccgcagctcgtcgagggcaag
gcgatccagctgcacccgctggtctgtgaggcgttcaacgccgacttcgacggcgaccag
atggcggtccaccttccgctgtcggccgaggcgcaggccgaggcccgcatcctgatgctg
tccagcaacaacatcctctcgcctgcttcgggtaggcccctggcgatgccgcgactggac
atggtcaccggtatctacttcctcaccaaggtccgcgagggagcagagggcgagggacac
gcgttcacctccccatccgaggcgatcatggcctacgaccggggtgcgctctccctgcac
gccaaggcgaagatccgggtcaccgaccgggttccgccgcgcggcaaggagccggaaggc
tgggagccgggtaagacctggctggcggagaccacgctcggccgggtgctgttcaacgac
ctgctccctgcggactacccgttcatcgacgagctgcttccgaagaagaagcaggctgcg
atcgtgaacgacctcgcggagcgctacccgatggtcgtcgttgcgcagacgctggacaag
ctcaaggacgccggattccactgggcgacgcgttcgggtatcaccatctccatctcggac
gtcgttgttcctgccaacaagcaggaaatcctcgacaagtacgagctggaagccagccgt
atcgagaagcggtaccagcgtggtgccctctcctacagcgagcgcaacagcgagttggtc
aaggtctggcagcgggcgaaggacgaagtcgctgaggcgatggagaagaacttccccgag
gacaacccgatcccgacgatcgtgaagtcgggtgcggcgggcaacatgacgcaggtcgtc
cagctggccggtatgcgtggcgtggtgtccaacaccaagggtgagtacatccctcggccg
atcaaggcgaacttccgtgagggcctgtcggtgctggagtacttcatctccacgcacggc
acccgtaagggtctcgccgacaccgcgattcgtaccgccgactcgggttacctgacccgg
cgtctggtggacgtctcgcaggacgtcatcatccgcgagaccgactgcggcaccgagcgc
ggcatcatcatgccgatcggtgatgacggcaccgagggacgtctcatccgcgacgtccac
gtcgagaccagcgtctactcgcgtagctctgcggaagacgtcaccgacgaggacggcaac
gtcctgctcgccagaggctccgacctcggtgacccggcgatcgagacgctgctgagcgcg
ggcgtgtcgaagctcaaggtccgcagcgtgctgacctgtgagtccgctgtcggtgtgtgt
gcggtctgctacggccgttcgatggcgaccggcaagctggtcgacatcggtgaggccgtc
ggcatcgtcgccgcgcagtcgatcggtgagccgggtacgcagctgacgatgcgtaccttc
caccagggcggcgtcgcgggtgacgacatcaccaccggtctgccccgtgtccaggagctg
ttcgaggctcgaatcccgaagggtaaggcgccgatctccgaggtcgacggccgaatccag
ctggaggagggcgaccgcttccggaagatcaccatcattccggacgacggcagcgaggag
atcgttcacgacaagctgtctcggcggcagtggttggccaccgtccaggtggacgacagc
gagcggccgttgcaggacggcgaccgggtgacggtcggccagcagctgctcgaaggtgcg
gtcgacccgcacgaggtgctgcgagtgatgggcccgagggaagcacagcttcacctggtt
cgcgaggtgcagaaggtgtatcggacgcagagcgtctcgatccacgacaagcacatcgag
gtcatcgttcgccagatgcttcgtcgggttacggtcatcgactccggttcgaccgagttc
cttcctgcatcctgggcggagcgcagcgtgttcgaggcggccaaccgtcgggtggtggcc
cagggcggcgagcccgcctcgggtcgtccggtcctgatgggtatcacgaaggcttcgctg
gcgaccgagtcctggctgtcggcggcctcgttccaggagaccaccagagtgctcaccgat
gccgcgatcaacggcaagagcgacaagctggtcggtctcaaggagaacgtgatcatcggt
aagttgatcccggcgggtaccggaatcaaccgctaccgcaacatccaggtgcagccgact
gaggaggcacgggccgcggcctacgcgatcccgtcctacgacgacggctactacacgcct
gatgtgttcggtaccggcaccggtgcggcagtgccgctggacgattacgacttcggtcgt
gacttccgctga

  All links  
Ontology (4)   
   KEGG BRITE (4)   
Pathway (1)   
   KEGG PATHWAY (1)   
Chemical reaction (1)   
   KEGG ENZYME (1)   
Genome (1)   
   KEGG GENOME (1)   
Gene (14)   
   KEGG ORTHOLOGY (1)   
   RefGene (11)   
   NCBI-PROTEINID (1)   
   OC (1)   
Protein domain (5)   
   Pfam (5)   
All databases (26)   

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