KEGG   Actinoalloteichus hymeniacidonis: TL08_22850
Entry
TL08_22850        CDS       T04472                                 
Name
(GenBank) DNA ligase, NAD-dependent
  KO
K01972  DNA ligase (NAD+) [EC:6.5.1.2]
Organism
ahm  Actinoalloteichus hymeniacidonis
Pathway
ahm03030  DNA replication
ahm03410  Base excision repair
ahm03420  Nucleotide excision repair
ahm03430  Mismatch repair
Brite
KEGG Orthology (KO) [BR:ahm00001]
 09120 Genetic Information Processing
  09124 Replication and repair
   03030 DNA replication
    TL08_22850
   03410 Base excision repair
    TL08_22850
   03420 Nucleotide excision repair
    TL08_22850
   03430 Mismatch repair
    TL08_22850
 09180 Brite Hierarchies
  09182 Protein families: genetic information processing
   03032 DNA replication proteins [BR:ahm03032]
    TL08_22850
   03400 DNA repair and recombination proteins [BR:ahm03400]
    TL08_22850
Enzymes [BR:ahm01000]
 6. Ligases
  6.5  Forming phosphoric-ester bonds
   6.5.1  Ligases that form phosphoric-ester bonds (only sub-subclass identified to date)
    6.5.1.2  DNA ligase (NAD+)
     TL08_22850
DNA replication proteins [BR:ahm03032]
 Prokaryotic type
  DNA Replication Elongation Factors
   Elongation factors (bacterial)
    Other elongation factors
     TL08_22850
DNA repair and recombination proteins [BR:ahm03400]
 Prokaryotic type
  SSBR (single strand breaks repair)
   BER (base exicision repair)
    DNA ligase
     TL08_22850
   NER (nucleotide excision repair)
    GGR (global genome repair) factors
     TL08_22850
   MMR (mismatch excision repair)
    DNA ligase
     TL08_22850
  DSBR (double strand breaks repair)
   NHEJ (non-homologous end-joining)
    SHDIR (short-homology-dependent illegitimate recombination)
     RecET pathway
      TL08_22850
SSDB
Motif
Pfam: DNA_ligase_aden DNA_ligase_OB HHH_2 BRCT DNA_ligase_ZBD HHH_5 PTCB-BRCT HHH
Other DBs
NCBI-ProteinID: AOS65350
Position
complement(5366736..5368952)
AA seq 738 aa
MTSESAQETDVPDLDQGNPRPAEGVEDVPAAERERHAALAEEITGHQFRYYVRDAPTISD
GEFDRLLGELAELERRHPGLATPDSPTQRVGGTFSTEFTTVDHLERMLSLDNAFDDEELT
SWVDRVEREVGGDAHYLAELKIDGLAINLLYENGRLVRALTRGDGRTGEDVTLNIRTMDD
VPERLHDNSEFPVPELVEVRGEVFFVLEEFTELNAGLVAGGRAPFANPRNAAAGSLRQKD
PRVTASRPLRLICHGLGRRTGFQPERQSDAYAALRAWGLPVSAHTVVLGSKTELAQHIAY
WGEHRHDAEHEIDGVVFKVDEVSLQRRLGTTSRAPRWAIAFKYPPEEATTELRDIQVNVG
RTGRVTPFAVMEPVKVAGSTVAMATLHNGDEVRRKGVLIGDRVVIRKAGDVIPEVLGPVV
DARDGSEREFVMPTHCPECATELRYEKEGDVDIRCPNARSCPAQLRERLFHLAGRGAFDI
EVLGYEAASALLSSKALTDEGDVFDLDEDALHQVDLFRTKGGELSANGRKLVRNLAAAKE
QPLWRVLVGLSIRHVGPTAARALAREFGSLERIDNADEAELAAAEGVGPTIANAVREWFA
VDWHRDVVDKWRRAGVRMEDEQYDSVPRTLEGLSIVVTGSLETYSRDEAKEAVMVRGGRP
ASSVSKKTAFVVVGDAPGSKYDKAMQLGVPVLDEAGFRVLLTEGPEAAAPLAERPADAEI
DTPAGADGEPTTDEGGAA
NT seq 2217 nt   +upstreamnt  +downstreamnt
gtgaccagcgaatcagcgcaggagacggacgtcccggacctcgaccagggcaacccccga
cctgcggagggcgtcgaggatgtgcccgccgcggagcgggagcgccacgcggccctcgcc
gaggagatcaccggacaccagttccgctactacgtgcgggatgcgcccacgatctccgac
ggcgagttcgatcgactcctcggcgaactggccgagttggagcgacggcatcccgggctg
gccacccccgactcgccgacccagcgggtcggcggcaccttctccaccgagttcaccacc
gtcgatcacctggagcggatgctcagcctggacaacgccttcgacgacgaggaactgacc
tcctgggtcgatcgggtcgagcgcgaggtcggcggcgacgcgcactacctcgccgagctc
aagatcgacggactcgcgatcaatctgctgtacgagaacggtcgactggtcagggcgctg
accaggggagacggtcgcaccggcgaggacgtcacgctcaatatccgcaccatggacgac
gtgccggaacgactgcacgacaactccgagttcccggtgccggagctggtcgaggtgcgc
ggtgaggtcttcttcgtgctggaggagttcaccgagctcaacgcgggtctggtcgcgggc
ggccgcgcgccgttcgccaacccgcgcaacgcggccgcaggctcgctgcggcagaaggac
ccccgcgtgacggcatcccgcccgttgcgcctgatctgtcacggactcggcaggcgaacc
ggcttccaacctgagcggcagtccgacgcctatgccgcgctgcgcgcctggggcctgccg
gtctccgcgcacacggtggtgctcggctccaagaccgaactggcccagcacatcgcctac
tggggcgagcaccggcacgacgccgaacacgagatcgacggcgtggtgttcaaggtcgac
gaggtgtccctgcaacgcaggctgggcaccacctcccgcgcgccgcgctgggcgatcgcc
ttcaagtacccgccggaggaggcgaccaccgagctgcgcgacatccaggtcaacgtgggt
cgcaccggccgcgtgacgccgttcgcggtgatggagccggtgaaggtcgcgggttcgacc
gtggcgatggcgacgttgcacaacggcgacgaggtgcggcgcaagggggtgctgatcggc
gaccgggtggtgatccgcaaggcgggtgacgtcattccagaggtgctcggcccggtcgtg
gacgcccgcgacggttccgaacgcgagttcgtcatgccgacgcactgcccggagtgtgcg
acggagctgcgctacgagaaggagggcgatgtcgacatccgttgccccaacgcgcggtcc
tgcccggcgcagctgcgggaacgactgttccacctggcgggccggggggccttcgacatc
gaggtgctcgggtacgaggccgcctcggccttgctgagctcgaaggcactgaccgacgag
ggcgatgtcttcgacctggacgaggacgccctgcatcaggtcgacctgttccgaaccaag
ggcggcgagctgtcggccaacggtcgcaagctggtccgcaatctggctgcggccaaggaa
caaccgctgtggcgggtgttggtcgggctgtcgatccggcacgtcggtcccacggcggct
cgggccctggccagggagttcggttcgctggagcgcatcgacaacgccgacgaggccgag
ctggccgccgccgagggcgtcgggccgaccatcgcgaacgcggtacgcgagtggttcgcc
gtggactggcaccgggacgtcgtcgacaagtggcggcgggccggggtgcgcatggaggac
gagcagtacgactcggtcccacgcacattggagggactgtcgatcgtggtcaccggttcg
ctggagacctattcgcgcgacgaggccaaggaagccgtgatggtgcgcggcggtagaccg
gcgagctcggtgtccaagaagacggcgttcgtcgtcgtcggcgacgcacccggctcgaag
tacgacaaggccatgcagttgggcgtcccggtgctcgacgaggccggtttccgggtgttg
ttgaccgaggggcccgaggccgccgcgccgttggccgagcggcccgctgacgccgagata
gacacgcctgccggagccgacggcgagcccacgacagacgagggcggtgcggcatga

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Ontology (4)   
   KEGG BRITE (4)   
Pathway (4)   
   KEGG PATHWAY (4)   
Chemical substance (5)   
   KEGG COMPOUND (5)   
Chemical reaction (2)   
   KEGG ENZYME (1)   
   KEGG REACTION (1)   
Genome (1)   
   KEGG GENOME (1)   
Gene (13)   
   KEGG ORTHOLOGY (1)   
   RefGene (10)   
   NCBI-PROTEINID (1)   
   OC (1)   
Protein domain (8)   
   Pfam (8)   
All databases (37)   

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