KEGG   Pseudalgibacter alginicilyticus: APS56_05525
Entry
APS56_05525       CDS       T04100                                 
Name
(GenBank) DNA-directed RNA polymerase subunit beta'
  KO
K03046  DNA-directed RNA polymerase subunit beta' [EC:2.7.7.6]
Organism
ahz  Pseudalgibacter alginicilyticus
Pathway
ahz03020  RNA polymerase
Brite
KEGG Orthology (KO) [BR:ahz00001]
 09120 Genetic Information Processing
  09121 Transcription
   03020 RNA polymerase
    APS56_05525
 09180 Brite Hierarchies
  09182 Protein families: genetic information processing
   03021 Transcription machinery [BR:ahz03021]
    APS56_05525
   03400 DNA repair and recombination proteins [BR:ahz03400]
    APS56_05525
Enzymes [BR:ahz01000]
 2. Transferases
  2.7  Transferring phosphorus-containing groups
   2.7.7  Nucleotidyltransferases
    2.7.7.6  DNA-directed RNA polymerase
     APS56_05525
Transcription machinery [BR:ahz03021]
 Prokaryotic type
  Bacterial type
   RNA polymerase
    Core subunits
     APS56_05525
DNA repair and recombination proteins [BR:ahz03400]
 Prokaryotic type
  SSBR (single strand breaks repair)
   NER (nucleotide excision repair)
    TCR (transcription coupled repair) factors
     DNA-directed RNA polymerase complex (RNAP)
      APS56_05525
SSDB
Motif
Pfam: RNA_pol_Rpb1_1 RNA_pol_Rpb1_5 RNA_pol_Rpb1_2 RNA_pol_Rpb1_3 RNA_pol_Rpb1_4 RPOC_hybrid DUF3879
Other DBs
NCBI-ProteinID: ALJ04629
UniProt: A0A0P0D7B9
Position
complement(1337111..1341409)
AA seq 1432 aa
MARKQDKNTVKRFNKISIGLASPESILAESRGEVLKPETINYRTHKPERDGLFCERIFGP
VKDYECACGKYKRIRYKGIVCDRCGVEVTEKKVRRDRVGHINLVVPVAHIWYFRSLPNKI
GYLLGLPSKKLDMIIYYERYVVIQPGNAKNEEGEPLQKLDFLTEEEYLNILESLPQDNQY
LDDTDPNKFLAKMGAECLIDLLARIDLESLSYELRHKANTETSKQRKTEALKRLQVVEAL
RESNNNRENRPEWMIMKVVPIIPPELRPLVPLDGGRFATSDLNDLYRRVIIRNNRLKRLV
EIKAPEVILRNEKRMLQESVDSLFDNTRKSSAVKTDSNRPLKSLSDSLKGKQGRFRQNLL
GKRVDYSARSVIVVGPELRLFECGLPKNMAAELYKPFVIRKLIERGIVKTVKSAKKIIDK
REPVVWDILENVLKGHPVLLNRAPTLHRLGIQAFQPKLIEGKAIQLHPLVCTAFNADFDG
DQMAVHLPLGPEAILECQLLMLASHNILNPANGSPVTVPSQDMVLGLYYMTKLRTSTPEV
PIKGEGLTFYSPEEVEIAFNEQQVDLNAGIKVRTIDINEDGKLAPMIIETTVGRVLFNQH
VPQAAGYINQVLTKKSLRDIIGEILKRTSVPETADFLDNIRTLGFKFAFQGGLSFSLGDI
IIPPEKQSMIDKANGLVDGITGNYNMGLITNNERYNQVIDIWTSTNAELTELSMKRIRED
QQGFNSVFMMLDSGARGSKEQIRQLTGMRGLMAKPKKSNAGGGEIIENPILSNFKEGLSI
LEYFISTHGARKGLADTALKTADAGYLTRRLVDVSQDVIINTEDCGTLRGVEVEPLKKND
EIVEKLSERIVGRVSLNDVYNPLTDELLVASGQLIEDQIAKAIEESPIESVEVRSALTCE
ALHGICAKCYGRNLATGKMVQRGEAVGVVAAQSIGEPGTQLTLRTFHVGGIAGNISEDNK
LVVKFNGIAEIEDLKTVKGEDNEGNEIDIVISRTSELKLTDKKTGITLSTNNIPYGSTLS
VKNGQELSKGDVVCSWDPYNGVIISEFAGKIKYENIEQGITYQVEIDEQTGFQEKVISES
RNKKLIPTLHIEDSKGEVIRSYNLPVGAHLMIDDGDKIKVGKILVKIPRKSAKAGDITGG
LPRVTELFEARNPSNPAVVSEIDGVVSFGKIKRGNREIIVESKLGEVKKYLVKLSSQILV
QENDYIKAGMPLSDGSITPNDILNIKGPSAVQQYLVNEVQEVYRLQGVKINDKHFEVVVR
QMMRKVRIIDSGDTIFLEDQLAHKDDFIKENDDIFGMKVIEDAGDSTNLKAGQIISPREL
RDENSILRREDKELVVARDAMPATATPILQGITRASLQTKSFISAASFQETTKVLNEAAV
AGKVDDLEGLKENVIVGHRIPAGTGMRRYTDIIVGSKEEFDEMMQAKELNYN
NT seq 4299 nt   +upstreamnt  +downstreamnt
atggcaagaaaacaagataagaatacagtaaagagatttaataaaatctccattggttta
gcgtcaccagagtctattttagcagagtcaagaggtgaggttttaaaaccagaaactatc
aattatcgaactcacaaaccagaaagagatggtttgttctgtgagcgtatttttggtcct
gtaaaggattatgaatgtgcttgtggtaaatataaaagaattcgctacaaaggaatcgtt
tgtgaccgttgtggtgtagaagtaactgaaaagaaagtacgtcgtgatagagtcgggcat
atcaaccttgttgttcctgtggctcatatctggtacttccgttcgttaccaaataaaatt
ggttatttattaggtttaccatctaagaaattagatatgataatttactacgaacgttac
gtagtaattcagcctggtaatgcaaaaaatgaagaaggagagcctttacaaaaattggat
ttccttacagaagaagaatatttaaatattttagagtcactgcctcaagataatcaatat
ttagatgatacagatcctaataagtttttagctaaaatgggagctgaatgtttaattgat
ttattagcgaggatagatttagaatctttatcatacgaattacgtcataaagcaaataca
gaaacatctaaacaacgtaaaacagaagctttaaaacgtttgcaagttgttgaagctcta
agagagtctaataacaacagagaaaatcgtccagaatggatgataatgaaagttgtgcca
attatcccgccagaattacgtcccttagtgccgttggatggtggtcgttttgcaacatca
gatttaaatgacttataccgtcgagttattatccgtaacaaccgtcttaaaagattggtt
gagataaaagctccagaagtgattttacgtaatgaaaaacgtatgctacaggaatctgta
gattcgttgtttgataacacacgtaaatcgtctgccgtaaaaacagattctaatagacca
ttaaaatcgttatccgattcacttaaaggtaagcaaggacgtttccgtcaaaacttactt
ggtaaacgtgtagattattctgcacgttcggtaattgttgttggaccagaattaagatta
tttgaatgtggactgccgaaaaacatggcagctgagttatacaaaccttttgtaattaga
aaattaattgaaagaggtattgtaaaaacagtaaaatctgcaaagaaaattatagataaa
agagagcctgtagtttgggatatattggaaaatgttctgaaaggacatccagtattacta
aaccgtgcgcctactttacacagattgggtatccaagcattccaaccaaaattaattgag
gggaaagctattcaattacacccattggtttgtacggcatttaatgcggattttgatggt
gatcaaatggcggtacatttaccattaggtccagaggctattttggaatgtcaattatta
atgttggcatcacataatatcttaaatccagctaatggttcacctgtaacggtaccttct
caagatatggtacttggtctttattatatgaccaaacttcgtacttcaactccagaagta
ccaattaaaggtgaaggattaactttttattctccagaggaagtagaaattgctttcaat
gagcaacaagttgatttgaatgctggtataaaagtaagaaccattgatattaatgaagat
ggtaaacttgctccaatgattattgaaactacggttgggcgtgtattgtttaatcaacac
gtgcctcaagcagctggatatatcaaccaagtattgaccaaaaaatctttaagagatatt
attggtgaaatccttaaaagaacatccgttccagaaacggctgatttcttagataatatt
agaactttaggatttaaattcgctttccaaggtggattgtcatttagtttaggagatatt
atcattccaccagaaaagcaatccatgattgataaggctaatggtttagtggatggtatt
accggaaactataacatggggcttattacaaataacgaacgttataaccaagttattgat
atttggacttctaccaatgcagaattgactgaattgtcaatgaaacgtattcgtgaagac
caacaaggatttaactcggtgtttatgatgcttgattctggagctcgtggatctaaagaa
cagattcgtcagcttacaggtatgcgtggattaatggcaaaacctaaaaaatcgaatgca
ggtggaggagagattattgaaaatccaattctatctaactttaaggaaggtctttcaatt
ttagaatactttatctctacgcacggtgctcgtaaaggtcttgcggatacggcccttaaa
acagccgatgcaggttatttaacacgtcgtctggtagatgtttctcaagatgttattatc
aatactgaagattgtggtacattaagaggtgtagaagtagagccattaaagaaaaatgat
gaaattgttgaaaaactttctgaaagaattgttggacgtgtatcattaaatgatgtttat
aatccattaactgatgagttgttagtcgcttctggtcaattaattgaagatcaaatagct
aaagctattgaagaatctccaattgaatctgttgaagtgcgttctgcattaacttgcgaa
gctttacatggtatttgtgctaaatgttacgggcgtaatttagcaactggtaaaatggta
caacgtggagaagctgttggggttgttgctgcacagtctatcggtgaaccaggaacacag
ttaacattacgtacattccacgtgggtggtattgcaggaaatatttctgaagataacaag
ttagttgttaagtttaatggtatagctgaaattgaagacttaaaaacggttaaaggtgaa
gataatgaaggaaatgagattgatattgttatttctagaacatctgaacttaaattaact
gataagaaaacaggtattactttaagcacaaataatattccttacggatctacattatct
gttaagaatggtcaagaactatctaaaggtgatgttgtttgttcttgggacccatataat
ggcgttattatttctgaatttgctggtaagattaaatatgaaaatattgagcaaggtatt
acctatcaggtagaaattgatgaacaaacaggtttccaagaaaaagtgatttccgaatct
agaaacaaaaaacttattcctacacttcatattgaggattctaaaggagaagtaatacgt
tcttataacttaccagtaggggctcacttaatgattgatgatggagacaaaattaaggtt
ggaaaaattttagttaaaatccctcgaaaatctgcaaaagcgggtgatattacaggaggt
ttaccacgtgtaacagaattatttgaagcacgtaatccttcaaatccagcagttgtaagt
gaaattgatggtgttgtttctttcggtaaaattaaaagaggtaaccgtgaaattatagta
gaatctaaattaggtgaagttaaaaagtatttagtaaaactttctagccagattttagtt
caagaaaacgattatattaaagcagggatgcctttatcagatggttcaattacgccaaat
gatattttaaatatcaaagggccttctgcagtacaacagtatttagtaaatgaagtacaa
gaagtatatcgtttacagggtgtgaaaattaatgacaagcactttgaagttgttgtaaga
caaatgatgcgtaaagtaagaattattgattctggagatactattttcttagaagatcaa
ttggctcataaagatgattttatcaaagaaaacgatgacatttttggaatgaaagtaatt
gaagatgctggagattctacgaatttaaaagcaggtcaaattatttcacctcgtgaatta
cgtgatgaaaattctattttgcgtagagaagataaagaacttgtagtagcaagagatgct
atgccagcaacggcaacaccaatcttacaagggattacaagagcgtcattacagactaaa
tcgtttatttcggcggcatctttccaagaaacaactaaagtacttaacgaagctgctgta
gcaggtaaagttgatgatttagaaggtcttaaagaaaatgttatcgttggacatagaatt
cctgcaggtacaggtatgcgtagatatacagatattatcgtaggttctaaagaagagttt
gatgaaatgatgcaagctaaagagttaaattataattag

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