KEGG   Histoplasma mississippiense: HCAG_00751
Entry
HCAG_00751        CDS       T02229                                 
Name
(RefSeq) ATP-dependent helicase NAM7
  KO
K14326  regulator of nonsense transcripts 1 [EC:5.6.2.5 5.6.2.3]
Organism
aje  Histoplasma mississippiense
Pathway
aje03013  Nucleocytoplasmic transport
aje03015  mRNA surveillance pathway
Brite
KEGG Orthology (KO) [BR:aje00001]
 09120 Genetic Information Processing
  09122 Translation
   03013 Nucleocytoplasmic transport
    HCAG_00751
   03015 mRNA surveillance pathway
    HCAG_00751
 09180 Brite Hierarchies
  09182 Protein families: genetic information processing
   03019 Messenger RNA biogenesis [BR:aje03019]
    HCAG_00751
Enzymes [BR:aje01000]
 5. Isomerases
  5.6  Isomerases altering macromolecular conformation
   5.6.2  Enzymes altering nucleic acid conformation
    5.6.2.3  DNA 5'-3' helicase
     HCAG_00751
    5.6.2.5  RNA 5'-3' helicase
     HCAG_00751
Messenger RNA biogenesis [BR:aje03019]
 Eukaryotic type
  mRNA surveillance and transport factors
   Surveillance factors
    Surveillance complex
     HCAG_00751
   mRNA cycle factors
    Common to processing body (P body) and stress granule
     HCAG_00751
SSDB
Motif
Pfam: UPF1_Zn_bind AAA_12 AAA_11 UPF1_1B_dom AAA_30 AAA_19 ResIII DEAD Viral_helicase1 UvrD-helicase SLFN-g3_helicase Helicase_RecD PIF1 nSTAND3 AAA_22 ATPase AAA_16 Ribosomal_S13_N PhoH AAA
Other DBs
NCBI-GeneID: 5449796
NCBI-ProteinID: XP_001543705
AA seq 1088 aa
MGNHLVSDSASTINAGDDMSTVDGDESILNMATGPRRRRHDDDEEEISDSFEDDDLESMA
SVPVDRASKATTSKPEEDKELPIHSCAYCGIHNPGTVVKCLTCTKWFCSARGNTSSSHIV
NHLVRARHKEVQLHPESSLGDTILECYNCGTKNVFLLGFIPAKSDTVVVLLCRQPCAAMP
SSKDMNWDTSRWQPLIEDRSFLPWLVSSPSDQEQLRARHLSPQMIAKLEEMWKDNAAATV
EDLEKATGVDDEPAPVLLRYDDAYQYQNVFGPLVKIEADYDRKLKEAQSQDGLVVRWDLG
LNNKHLASFVLPKLELGDVKLAVGDEMRLKYTGELRPKWDGVGYVIKIPNNQSDEVTIEL
RTKGDHKSVPTDCTHNFTADYVWKATSFDRMQLAMKTFAVDEMSVSGYIFHRLLGNEVAA
GPMRTQMPKKFSVPGLPDLNSSQTNAVKSVLQKPLSLIQGPPGTGKTVTSANIIYNLAKI
NGGQVLVCAPSNVAVDQLCERIHRTGLKTVRVTAKSREDVESPVGFLSLHEQVHNNDSNI
ELVKLNQLKAELGELSSQDEKKFKQLVRAAEKEILSNADVICCTCVGAGDPRLAKFKFRT
VLIDESTQSAEPECMIPLVLGCKQVVLVGDHQQLGPVIMNKKAAKAGLNQSLFERLVILG
CAPIRLNVQYRMHPCLSEFPSNMFYDGSLQNGVTESERLLKDVDFPWPVAHNPMMFWSNL
GNEEISASGTSYLNRTEAANVEKIVTRFFKAGVKPSSIGIITPYEGQRSYVVSSMQATGT
FKKELYKEIEVASVDAFQGREKDYIVLSCVRSNDHQGIGFLSDPRRLNVALTRAKYGLVI
LGNPKVLSKHPLWNYLLLHFKEKNCLVEGPLSNLQVSLVQFSRPKQAYRGPQRFQVAYNH
ASNMASGMVNGRNGHRGDYHDTGSVASYIPDDVSSVNSSAVGGVPIPSGYPHVFRSFTDS
WPHLPRHRRANGSRGKGASSVTGESVAASESDVTGSIVGQGGVSLSGLSIHDMNKQASMS
QSDRLKRYVESGSRGEPYKPGPSDNGSIFGGSSASIRVPRGCRGNPADDDDARSVSTAFA
SQIGGNYD
NT seq 3267 nt   +upstreamnt  +downstreamnt
atggggaatcatctggtttcagactctgcttctacgatcaatgctggagatgacatgtca
accgtcgacggagatgaaagtatcttaaatatggcaactgggcctcgaaggcgacgacat
gatgatgatgaagaggagatatcagatagttttgaggatgatgatttggaaagcatggct
agcgtccctgtggatagagccagcaaggccaccacttccaaacccgaggaagacaaggaa
ctaccaattcattcttgcgcatattgtggaattcacaatcccggcactgtagtgaagtgc
ttaacttgcactaaatggttttgcagcgcgcgtggcaacacgtcttcctcccatatcgtc
aatcacctagttagagcaaggcataaagaagttcaactacaccccgaatcatcacttggt
gacacgattctcgaatgctacaactgcgggaccaaaaatgttttccttctgggctttatt
cctgctaaatcagacactgttgtggtactgctttgtcgacaaccttgtgctgcgatgcca
tcttcgaaagacatgaattgggatacttcgcgctggcaacctcttattgaagaccgctcc
tttttgccttggctcgtgagttctccctctgaccaagagcagcttcgcgctcgacatcta
agtcctcaaatgattgcgaagctagaggagatgtggaaagacaatgccgcagctaccgtt
gaagatctggaaaaagcaactggcgttgatgacgaacctgcgccagttctccttcggtat
gacgacgcataccaatatcagaatgtttttggtcctctcgtcaagatcgaagccgactat
gatcgcaaattgaaagaggcccaatctcaagatggtctggttgtacgctgggacctggga
ctgaacaacaagcatcttgcgagctttgttctcccaaagctagaacttggcgatgtgaag
ctagcagttggcgatgaaatgcggcttaaatataccggagagctgcggcctaagtgggac
ggcgtgggatacgtcatcaaaatcccgaacaaccagtctgacgaggttactattgaattg
cgaaccaagggcgaccataaatctgtccccaccgactgcacacataatttcacagctgac
tatgtttggaaagcgacgtcctttgaccgtatgcagctagccatgaaaacatttgctgtt
gatgagatgagtgtttcgggctacattttccatcggcttttagggaatgaagttgccgct
gggcctatgagaactcaaatgcctaaaaagttcagcgtaccaggcctcccagacctcaac
agcagtcaaaccaatgccgttaaaagcgttcttcagaaacctctgagcttgattcaagga
cctcctggtactggaaaaactgtcacttctgctaacataatttacaacttagcgaaaata
aacggcggccaagtattggtctgcgcaccatctaatgttgcggttgaccaactttgtgaa
cgcatccacagaactggcttgaagaccgttcgtgtcactgccaagtctcgagaagatgtg
gagtctcctgtgggctttctttctctccacgaacaggtccataacaacgacagcaatatc
gaacttgtcaaactcaaccaactgaaggctgagctgggtgagctttccagccaagatgag
aagaagttcaaacaactagttcgtgctgcggaaaaggagattttgagcaatgcggatgtt
atttgctgtacttgcgttggagctggcgatcctcgcctcgcaaagttcaaattccgaacc
gttcttatcgatgagtctacgcagtcagcggagcccgagtgcatgattccactcgtcctg
ggatgtaaacaagttgtccttgttggcgaccatcaacagcttgggcctgttatcatgaac
aagaaggcggccaaggctggacttaaccaatccctgtttgagcgcttggtcatcctagga
tgtgcacctattcggcttaacgtacagtatcgcatgcatccatgtctctccgagttcccg
tcaaacatgttctacgatggttccctgcagaacggagttaccgaatcagaacgtcttcta
aaagatgttgattttccttggcctgtggcgcacaatccaatgatgttctggtcaaatttg
ggaaatgaagaaatttcggcatcagggacgtcatacctcaaccgcacagaagctgccaac
gtggaaaaaattgtcaccagatttttcaaggctggcgtaaagccttccagtatcgggatc
atcacaccttatgaaggacagcgtagctatgttgtcagctcgatgcaagcgactggcacg
ttcaaaaaggagctttacaaagaaattgaagttgcgtcagttgatgcgttccagggccga
gagaaagactacatcgtgctctcctgtgtcagatctaacgaccatcaaggaattggattt
ttgagtgacccacgtcggcttaatgtcgctcttacgcgtgccaaatatggcctggtcatc
ctaggaaacccgaaagttctgtcgaagcatcctctgtggaactatcttctacttcatttc
aaagaaaagaactgcctagtagaaggtccattgtcaaacttgcaggtgtctcttgtccag
ttcagccgcccgaaacaggcctatcgaggaccacagcgtttccaggtagcctataaccac
gcatccaatatggccagtggcatggtcaatggcaggaatggccatcgcggtgactaccac
gacacaggatctgtggccagttacatcccagatgatgtctcctcagttaattcgtctgct
gttggaggcgttcctattccatctggatatcctcatgtattccggagctttactgactcc
tggccacaccttccacgccaccgtcgcgctaacggatctagaggcaaaggtgcgtctagc
gttactggcgagtcggtcgcagcttctgagtccgacgtcacgggcagtatcgttggacaa
ggaggcgtaagcctctctggtttaagcattcatgatatgaataagcaggcaagcatgagc
cagtctgatcgtttgaaacgctatgtcgaatccggcagtcgtggagagccatacaaacct
ggacctagtgataacggcagcatatttggaggaagttcggcaagcattcgtgttcctcgt
ggctgccgtggtaatccagctgatgacgacgatgctcgcagtgtctcgacagcctttgca
agtcaaatcggtggaaactacgactga

  All links  
Ontology (3)   
   KEGG BRITE (3)   
Pathway (2)   
   KEGG PATHWAY (2)   
Chemical reaction (2)   
   KEGG ENZYME (2)   
Genome (1)   
   KEGG GENOME (1)   
Gene (49)   
   KEGG ORTHOLOGY (1)   
   RefGene (45)   
   NCBI-PROTEINID (1)   
   NCBI-Gene (1)   
   OC (1)   
Protein sequence (1)   
   RefSeq(pep) (1)   
DNA sequence (1)   
   RefSeq(nuc) (1)   
Protein domain (20)   
   Pfam (20)   
All databases (79)   

Download RDF
DBGET integrated database retrieval system