KEGG   Histoplasma mississippiense: HCAG_07085
Entry
HCAG_07085        CDS       T02229                                 
Name
(RefSeq) similar to U5 snRNP 100 kD protein
  KO
K12858  ATP-dependent RNA helicase DDX23/PRP28 [EC:5.6.2.7]
Organism
aje  Histoplasma mississippiense
Pathway
aje03040  Spliceosome
Brite
KEGG Orthology (KO) [BR:aje00001]
 09120 Genetic Information Processing
  09121 Transcription
   03040 Spliceosome
    HCAG_07085
 09180 Brite Hierarchies
  09182 Protein families: genetic information processing
   03041 Spliceosome [BR:aje03041]
    HCAG_07085
Enzymes [BR:aje01000]
 5. Isomerases
  5.6  Isomerases altering macromolecular conformation
   5.6.2  Enzymes altering nucleic acid conformation
    5.6.2.7  DEAD-box RNA helicase
     HCAG_07085
Spliceosome [BR:aje03041]
 Complex B
  U4/U6.U5 tri-snRNP components
   U5 snRNP specific factors
    HCAG_07085
 Complex C
   U5 SnRNP specific factors
    HCAG_07085
SSDB
Motif
Pfam: DEAD ResIII DUF2986
Other DBs
NCBI-GeneID: 5444348
NCBI-ProteinID: XP_001537663
AA seq 635 aa
MFSRQNANDVTESFNSEKSTCYLAITMDWIAENRPPGPPPEPFERSPTPPPPPPVSLVPP
PPPDAAAPPPPPDSIAPPPPPPEDAPLPEPPAAKRKKVGWGSQRSATPLSVEELLRKKRE
ADEAASKPKFLTRAEREKLALEKRAKEVENKKRLQTNGARPSPRNSETNGYNSSASRSDG
IDGSSRAPIPTGPRGMRHGEIPTAPAAMRTKQNDMPPPPSPGQKAEQKGEKRPSPEEAQA
ALIRQRYMGSDQTSNFSAKKKRRRTTERKFNFEWNADEDTSPDYNPLYQNRSIANFFGRG
RLAGFSDEFADAVTRNYARALEDRDPEAGRARAREILEMERRRKEEGGRHALDAHWSEKK
LEHMRERDWRIFKEDFNISTKGGSIPNPMRSWAESGLPKRLLSIVEQVGYTDPSPIQRAA
IPIALQNRDLIGVAVTGSGKTAAFLLPLLVYIAELPRLDEFEWRRNDGPYAIILAPTREL
AQQIEIEAKKFSVPLGFNVVSIVGGHSLEEQAYSLRNGAEIIIATPGRLVDCIERRMIVL
SQCCYVIMDEADRMIDLGFEEPVNKILDALPVTNQKPDTEDAENAQAMSRHIGGKDRYRQ
TMMYTATMPSAVERIARKYLRRPAIVTIGNIGEAV
NT seq 1908 nt   +upstreamnt  +downstreamnt
atgttttccagacagaacgccaacgatgtaactgagagcttcaattctgagaagagcacc
tgttatttggcaataactatggattggatcgctgaaaatagaccccctggaccacccccg
gagccctttgaacgctctcctacaccacctccgccgccacccgtatcgctggtgccgcct
ccgccaccagatgccgctgctcctcctccgcccccggattcaatagctcctcctcctcct
cctcccgaagatgcgccgcttcccgagccgcctgcagctaagagaaagaaggttggctgg
ggaagtcagcggtcagcgacgcctctgagtgttgaggaactactccgaaagaagcgggaa
gctgatgaagctgcatcaaagcctaaattcctcacaagagcagaaagagagaagctcgca
ttagagaaacgcgcgaaagaggtggaaaataaaaagcgactgcaaacaaacggcgccagg
ccctcgcctcgaaattctgaaacgaacggttataattcttcagcatcaagaagtgatgga
attgatggatcttcccgggccccaattcccacggggccccgtggcatgagacacggagaa
atcccaactgctccagccgcgatgcgcacgaaacaaaatgatatgcctccacctccctct
cccggtcagaaggctgaacaaaagggagaaaagcggccttctccagaagaagcacaagcg
gccttgatacgacaacgatatatgggaagtgaccagacgtcgaatttctctgcgaagaaa
aaacggaggaggacaacggaaaggaaatttaacttcgagtggaatgcggatgaagatact
agccccgattacaatccactctatcaaaaccgttcgattgcaaatttctttggtcgaggt
cgcttagctgggttcagtgacgaatttgcagatgcggttacaagaaactacgcaagagct
ttagaagatagagatccggaggctggtagagccagagcgagggagattttggaaatggaa
agaagaaggaaagaagaagggggacggcatgccttggatgcacattggtccgagaagaag
ttggaacacatgcgcgagagggactggcgaatattcaaggaagatttcaacatcagtacc
aagggaggaagcattcccaatcccatgcggtcgtgggccgaatcgggattaccaaaacgc
cttcttagtattgttgagcaagttggatacaccgacccgtcgcctattcagcgagctgct
atccctattgcgttgcaaaatcgagaccttatcggtgttgctgtgactggttccggaaaa
actgcagcattcttactccctctgctcgtctacatagcagaactcccacgactagatgag
tttgaatggagaagaaatgacggtccgtatgcgataatcctagcgccgacacgcgaatta
gcccaacaaatcgaaatcgaagctaagaagttctctgtccctcttggattcaacgttgtc
agtattgtcggtggtcattcgctggaagaacaggcttacagtttgcgcaacggggcggag
atcatcatcgccacccccggccgtttggtagactgtatcgagagacggatgattgtcctt
agtcaatgctgctacgttatcatggacgaagccgaccgtatgattgatctcggctttgag
gagcctgtgaacaaaatcctcgacgctctccccgtcacaaatcagaaaccggatactgaa
gacgcagaaaacgcccaagcaatgagccgacatatcggcggcaaagaccgatataggcaa
acgatgatgtataccgccaccatgccttctgccgtcgagcgaattgcacgcaaatacctc
cgacggcccgcgatcgtcacaatcggcaacatcggcgaagccgtttga

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Ontology (2)   
   KEGG BRITE (2)   
Pathway (1)   
   KEGG PATHWAY (1)   
Chemical reaction (1)   
   KEGG ENZYME (1)   
Genome (1)   
   KEGG GENOME (1)   
Gene (19)   
   KEGG ORTHOLOGY (1)   
   RefGene (15)   
   NCBI-PROTEINID (1)   
   NCBI-Gene (1)   
   OC (1)   
Protein sequence (1)   
   RefSeq(pep) (1)   
DNA sequence (1)   
   RefSeq(nuc) (1)   
Protein domain (3)   
   Pfam (3)   
All databases (29)   

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