KEGG   Poseidonibacter parvus: LPB137_11600
Entry
LPB137_11600      CDS       T04722                                 
Name
(GenBank) DNA-directed RNA polymerase subunit beta'
  KO
K03046  DNA-directed RNA polymerase subunit beta' [EC:2.7.7.6]
Organism
alp  Poseidonibacter parvus
Pathway
alp03020  RNA polymerase
Brite
KEGG Orthology (KO) [BR:alp00001]
 09120 Genetic Information Processing
  09121 Transcription
   03020 RNA polymerase
    LPB137_11600
 09180 Brite Hierarchies
  09182 Protein families: genetic information processing
   03021 Transcription machinery [BR:alp03021]
    LPB137_11600
   03400 DNA repair and recombination proteins [BR:alp03400]
    LPB137_11600
Enzymes [BR:alp01000]
 2. Transferases
  2.7  Transferring phosphorus-containing groups
   2.7.7  Nucleotidyltransferases
    2.7.7.6  DNA-directed RNA polymerase
     LPB137_11600
Transcription machinery [BR:alp03021]
 Prokaryotic type
  Bacterial type
   RNA polymerase
    Core subunits
     LPB137_11600
DNA repair and recombination proteins [BR:alp03400]
 Prokaryotic type
  SSBR (single strand breaks repair)
   NER (nucleotide excision repair)
    TCR (transcription coupled repair) factors
     DNA-directed RNA polymerase complex (RNAP)
      LPB137_11600
SSDB
Motif
Pfam: RNA_pol_Rpb1_1 RNA_pol_Rpb1_5 RNA_pol_Rpb1_2 RNA_pol_Rpb1_3 RNA_pol_Rpb1_4
Other DBs
NCBI-ProteinID: APW66452
UniProt: A0A1P8KPC1
Position
complement(2353419..2357942)
AA seq 1507 aa
MSKTEKILQPIEIKELERPTDFSAFQLRLASPEKILSWSSGEVKKPETINYRTLKPERDG
LFCAKIFGPVKDYECLCGKYKKMRYKGVVCEKCGVEVTSSKVRRHRMGHIDLVSPVAHIW
MVSSLPTRIGTLLGVKLKDLERVLYYEAYIVSDAGDAYYDNEKTKKVLKYDILNEEQYRT
ISDLFEHTGFHANMGGQVVRDLLETMDLFELLAKLKEDMSATKSEAKRKTLIKRLKVVEN
FINSGNRPEWMMLTQLPVLPPDLRPLVSLDGGKFAVSDVNDLYRRVINRNNRLKRLTELD
APEIIIRNEMRMLQEAVDALFDNGKTANAVKGANKRPLKSLSEIIKGKQGRFRQNLLGKR
VDFSGRSVIVVGPTLNMDQCGIPKKMALELFKPHLMAKLEEKGYATTLKSAKRLIESETN
EVWECLNEIVDEYPILLNRAPTLHKLSIQAFHPVLIDGKAIRLHPLVCAAFNADFDGDQM
AVHVPLSQEAVAEAKILMMSSMNILLPASGRAIAVPSQDMILGIYYLSLEKDGVKGEHKL
FTGVDEASIALDMKQVDLHAKIRTQIDGKVIHTTVGRLIIHDILPDFVPVNLWNKILKKK
DIGILVDYIYKHGGYEVTPKFLDNLKNLGFKYATSAGISISIDDINVPESKVGHVTKSKK
EVIEVQKQFSQGLLTEQERYNKIIDIWTEVNNKLGSEMMNLVEADKDGFNSIYMMADSGA
RGSAAQIRQLAGMRGLMAKPDGTIIETPIISNFREGLNVLEYFISTHGARKGLADTALKT
ANAGYLTRKLIDVSQNVRITIEDCGTHEGIEITDITSGNELIEALEERITGRVIAEDIID
PISNEILFTEGTLITEEDAKVVAEAEVKAVTIRTPLTCKVEHGLCSKCYGLNLGEQRKAT
PGEAVGVVAAQSIGEPGTQLTLRTFHVGGTASATQTERELKADKEGFIRYYNIKKYTNSS
GQSIVANRRNAGILLVEPKINAPFKGKVTVETLHEDTILTITNGKDKKEFYLRKNDVAKA
NELAGVSGKIEGKLYLPYKDGEEVEENESIVEMIKDGWNVPNRIPFASELRVEDGAPITS
KITSGAKGFVKYYKLTGDYLERRDDIKSGDKVSDKGLFSVIVDGEGREALRHYIARGSIV
ELNDNVEVEKDSVIAVPENAEQVVIAEWDPYANPTIAEKAGTISFEDIIPGITVAEQFDE
LTGTSKLVVNEYIPSGYKPTVVLATENDEIIRYSLDPKTSLNISEGQKVQIADIIGKTPK
ATQKSKDITGGLPRVSELFEARRPKSIALLSSFDGIVSFGKPLRNKQRIIVTDEVGNKAE
YLAEKSKQILVHEGEFVHAGEALTDGQTSPHDVLRILGDKALHYFIVSEVQQVYRSQGVN
IADKHIEVITSQMLRQVSILDGGDTKFIIGDMISKKRFKIENERIIKLGGEPAIAEPLLL
GITRAAVTSDSIISAASFQETTKVLTEAAISAKMDMLEDLKENVVIGRTIPVGTGLYKDQ
KIKFSEH
NT seq 4524 nt   +upstreamnt  +downstreamnt
atgagtaaaactgaaaaaatattacaacctattgaaattaaagaattagaaagaccgaca
gacttttcggcctttcaattaagacttgcaagtcctgaaaagattctttcatggtcatct
ggtgaagttaaaaaacctgaaactattaactatagaacacttaaacctgaaagagatggt
ttattttgtgctaaaatttttggacctgtaaaagattacgaatgtctttgtggtaaatac
aaaaagatgagatacaaaggtgttgtatgtgaaaaatgtggtgttgaagtaacttcttcg
aaagttagacgtcacagaatgggtcatattgacttagtttctcctgttgcacacatttgg
atggtatcatcacttccaactagaattggtactttattaggtgttaaattaaaagactta
gaaagagttttatattatgaagcatacatcgtatctgatgctggtgatgcttactatgat
aatgaaaaaactaaaaaagttttaaaatatgatattttaaatgaagaacaatatagaact
atttctgatttatttgaacatacaggtttccatgcaaatatgggtggacaagttgtaaga
gatttattagaaactatggatctttttgaattacttgcaaaacttaaagaagatatgagt
gctactaaatcagaagcaaaaagaaaaactttaatcaaaagattaaaagttgtagaaaac
tttattaactctggtaatagaccagaatggatgatgttaactcaacttccagttcttcca
cctgatttaagacctcttgtatcacttgatggaggaaaatttgctgtttcagatgttaat
gatttatatagaagagttatcaacagaaataacagacttaaaagattaacagaacttgac
gcacctgaaatcattatcagaaatgaaatgagaatgcttcaagaagcagttgatgcttta
tttgataatggtaaaactgcaaatgcagttaaaggtgctaataaaagacctttaaaatct
ttatctgaaattattaaaggtaagcaaggtcgatttagacaaaacttacttggaaaaaga
gttgacttctctggtagatctgtaattgttgttggacctacattaaatatggaccaatgt
ggtattcctaagaaaatggctttagagttatttaaaccacacttaatggctaaattagaa
gaaaaaggttacgcaactactttaaaatctgcaaaaagattaattgagtctgagactaat
gaagtttgggaatgtttaaatgaaattgttgatgaatatcctattttattaaatagagca
ccaacattacataaattatctattcaagcatttcaccctgttttaattgatggtaaagct
attagattacatccattagtgtgtgctgcatttaatgccgattttgatggagatcaaatg
gcagttcacgttccattatcacaagaagcagttgcggaagcaaaaattcttatgatgtct
tctatgaatattcttttacctgcatcaggtcgtgcaattgccgtaccttctcaggatatg
attttagggatttactacctatcattagaaaaagatggtgttaaaggtgagcataaatta
tttacaggtgttgatgaagcttcaattgctttagatatgaaacaagtagatttacatgcg
aaaattagaacacaaattgatggaaaagttattcacactactgttggtagattaattatt
catgatatcttacctgattttgttccagttaatttatggaataaaattttaaagaaaaaa
gatattggtattttagttgattatatctacaaacatggtggatatgaagtaactccgaag
ttcttagataatcttaaaaacttaggttttaaatatgctacaagtgctggtatttcaatt
tctattgatgatattaatgtacctgaatcaaaagttggtcacgttacaaaatctaagaaa
gaagttattgaagttcaaaaacaattctctcaaggtttattaactgagcaagaaagatat
aataagattattgatatctggactgaagtaaataataaacttggttcagaaatgatgaac
ttagttgaagctgataaagatggatttaattctatttatatgatggctgattcaggggct
agaggttctgctgctcaaattagacagctagcaggtatgaggggtcttatggctaaacca
gatgggactattattgaaacaccaattatttcaaacttccgtgaaggtttaaatgtactt
gagtactttatttctactcacggtgctagaaaaggacttgcggatacagccttaaaaact
gcgaatgctggttatttaacaagaaaattaattgatgtatctcaaaatgtaagaattaca
attgaagattgtggaactcacgaaggtattgaaattactgatattacttctggtaatgaa
ttaattgaagcacttgaagagagaattactggtagagttattgctgaagatattattgac
ccaatttcaaatgaaattttatttactgagggtacattaattactgaagaagatgcaaaa
gttgttgctgaagctgaagtaaaagctgttactattagaactccattaacttgtaaagtt
gaacatggtttatgttctaaatgttatggtcttaacttaggtgagcaaagaaaagcaact
ccaggtgaagctgttggtgttgttgctgctcaatctattggtgagccaggaacacaactt
acacttagaactttccacgttgggggaactgcaagtgcaactcaaactgaaagagaatta
aaagctgataaagaagggttcattagatattacaatatcaaaaagtacactaattcatca
ggtcaatcgattgttgcaaatagaagaaatgcaggtatattacttgttgaacctaaaatt
aatgcaccattcaaaggtaaagttacagttgaaactttacatgaagatacaatcttaact
attactaatggtaaagataaaaaagaattctacctaagaaaaaatgatgttgctaaagca
aatgaattagcaggtgtttctggtaaaattgaaggtaaactatacttaccttataaagat
ggtgaagaagtagaagaaaacgaatcaattgttgaaatgattaaagatggttggaatgtt
ccaaacagaattcctttcgcatctgaattaagagttgaagatggagcaccaattacatct
aagattacatctggagcaaaaggtttcgttaaatactataaattaactggtgattactta
gaaagaagagatgatatcaaatctggagataaagttagtgataaaggtttattctctgtt
attgttgatggtgaaggtagagaagctttaagacattatattgcaagaggttctattgtt
gaacttaatgataatgttgaagttgaaaaagattcagttattgcagttccagaaaatgca
gagcaagttgtgattgcagaatgggatccatatgcgaatcctactattgctgaaaaagct
ggtacaatttcttttgaagatattattccagggattactgttgcagaacaatttgatgaa
ttaactggtacttctaagttagttgttaatgagtatattccaagtggatataaaccaact
gttgtattagcaactgaaaatgatgaaattattagatattctttagatcctaaaacatct
ttaaatatttctgaaggtcaaaaagttcaaattgctgatattattggtaaaacaccaaaa
gcaacacaaaaatcaaaagatattactggtggtcttccaagagtatctgagttatttgaa
gcaagacgaccaaaatcaattgctcttttatcttcatttgatggtattgtttcttttggt
aaaccattaagaaataaacaaagaattattgttactgatgaagttggtaataaagcagag
tatttagctgagaaatctaagcaaattctagtacatgaaggtgagtttgttcatgctggt
gaagcattaacagatggtcaaacatctcctcatgatgtattaagaatcttaggtgataaa
gctcttcactactttattgtttctgaagtacaacaagtatatagatctcaaggggtaaat
attgctgataaacatattgaggttattacatctcaaatgttaagacaagtatcaatcctt
gatggtggtgatactaagtttattattggtgatatgatttctaagaaaagatttaaaatt
gagaatgaaagaattattaaattaggtggagaacctgctattgctgaacctttattatta
ggtattacaagagctgctgttacatctgattctattatctcagctgcatctttccaagag
actactaaagtattaacagaagctgcaatttcggctaaaatggatatgttagaagactta
aaagaaaatgttgttattggtagaactattcctgttggaactggtttatataaagaccaa
aaaattaaattttctgaacactaa

  All links  
Ontology (4)   
   KEGG BRITE (4)   
Pathway (1)   
   KEGG PATHWAY (1)   
Chemical reaction (1)   
   KEGG ENZYME (1)   
Genome (1)   
   KEGG GENOME (1)   
Gene (3)   
   KEGG ORTHOLOGY (1)   
   NCBI-PROTEINID (1)   
   OC (1)   
Protein sequence (1)   
   UniProt (1)   
Protein domain (5)   
   Pfam (5)   
All databases (16)   

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