KEGG   Alteromonas naphthalenivorans: ambt_13635
Entry
ambt_13635        CDS       T01513                                 
Name
(GenBank) DNA polymerase III subunit alpha
  KO
K02337  DNA polymerase III subunit alpha [EC:2.7.7.7]
Organism
alt  Alteromonas naphthalenivorans
Pathway
alt03030  DNA replication
alt03430  Mismatch repair
alt03440  Homologous recombination
Brite
KEGG Orthology (KO) [BR:alt00001]
 09120 Genetic Information Processing
  09124 Replication and repair
   03030 DNA replication
    ambt_13635
   03430 Mismatch repair
    ambt_13635
   03440 Homologous recombination
    ambt_13635
 09180 Brite Hierarchies
  09182 Protein families: genetic information processing
   03032 DNA replication proteins [BR:alt03032]
    ambt_13635
   03400 DNA repair and recombination proteins [BR:alt03400]
    ambt_13635
Enzymes [BR:alt01000]
 2. Transferases
  2.7  Transferring phosphorus-containing groups
   2.7.7  Nucleotidyltransferases
    2.7.7.7  DNA-directed DNA polymerase
     ambt_13635
DNA replication proteins [BR:alt03032]
 Prokaryotic type
  DNA Replication Elongation Factors
   Elongation factors (bacterial)
    DNA polymerase III holoenzyme
     ambt_13635
DNA repair and recombination proteins [BR:alt03400]
 Prokaryotic type
  SSBR (single strand breaks repair)
   MMR (mismatch excision repair)
    DNA polymerase III holoenzyme
     ambt_13635
SSDB
Motif
Pfam: DNA_pol3_alpha DNA_pol3_finger PHP HHH_6 DNA_pol_IIIA_C tRNA_anti-codon
Other DBs
NCBI-ProteinID: AEF04245
UniProt: F5Z4I6
Position
complement(3083100..3086519)
AA seq 1139 aa
MMDGLNKVKPILGKVSEYNMPAVAITDQMNMCGLVKFYSGAHGLGIKPIIGTDFWVTNEA
FGDEPFRLTLLAMNNEGYKNITVLISKAYLRGHVAHRAVIDQDWLIEHAEGVIILSGAQL
GDVGVALTKNNTSLLAESLAFYKTHFPDRFYLELIRTGRPGEEDYLHRAVECAEREGLPV
VATNEVCFINKEGFDAHEIRVCIHDGYTLDDTRRPKRYSDQQYLRTSEEMVELFSDIPEA
IENTVEIAKRCNVTVRLDEYFLPQFPTGGMTTEDFLVKVSEEGLERRLAFLFPDEQVRAE
KRPEYDDRLRIELEVINQMGFPGYFLIVMEFIQWSKDNNIPVGPGRGSGAGSLVAYALDI
TDLDPLEFDLLFERFLNPERVSMPDFDVDFCMDRRDEVIDHVAELYGRQAVSQIITFGTM
AAKAVVRDVGRVLGHPYGFVDRISKLIPPDPGMTLEKAFAAEPRLPEVYDQDEEVKDLID
MARILEGVTRNAGKHAGGVVIAPTTITDFAPLYCDDEGNNPVTQFDKNDVETAGLVKFDF
LGLRTLTIIQWAIDMVKEGKGIDIDITSIPLADAKSFRTLLNAETTAVFQLESRGMKELI
KRLKPDSFEDIIALVALFRPGPLQSGMVDNFIDRKHGREAISYPDAEYQHECLQEILEPT
YGIILYQEQVMQIAQEMAGYSLGGADLLRRAMGKKKPEEMAKQRGAFAEGSRNNNIDPDL
AMKIFDLVEKFAGYGFNKSHSAAYALVSYQTLWLKAHYPAEFMAAVMSADMDNTDKIVTL
VDECSRMGLELLPPDLNAGKHKFTVDEKGRIVYGIGAIKGVGEGPIEAIIEARENQGAFK
DLFDFCAKIDIKRVNKRVLEKLVLAGALDNLGPHRAALMASLPDAIAAAGQHAKAESFGQ
SDMFGLLTTEPDEVEQAFADVPLWPEKVWLEGEKDTLGLYLTGHPINQYVEEIRHYTDGR
LVDLKPTGKEQMANAVGLVLGVRVMTNKRGRRWAIVTLDDKSARIDARFFPDTFEQYESM
LETDKILLIKGQVSFDDFSGGNTITARDVMDIVQAREKNARALALNVETQLLEPKKINQM
QSILQAFKGGSCPVHLLVTHPDAEALITCGARWFVTPEDQLLHDLKQCLGEKAVSILYH
NT seq 3420 nt   +upstreamnt  +downstreamnt
atgatggatgggcttaataaggttaagcccatacttggcaaagtatccgagtacaacatg
cctgctgtggcgattaccgaccaaatgaatatgtgtggtttggtaaagttttattctggc
gcacatgggcttggcattaaacctattattggtaccgatttctgggtgaccaatgaagcc
ttcggcgatgagccgttccgtcttaccttgcttgcgatgaataacgagggctataagaac
attacggttcttatttctaaggcctacttgcgaggtcacgttgcgcatagagcggtaatc
gatcaagactggcttattgaacatgcagaaggcgtaatcatactctctggtgctcaactg
ggggatgttggtgttgcacttactaaaaataacaccagcttgttggcagaatcattggcc
ttctataaaacccatttcccagaccgtttttatcttgagctaattcgtactggtcgccct
ggtgaagaagattacttacatcgcgcggtagaatgtgccgagcgagaaggcttgcctgta
gtggcaaccaatgaagtgtgcttcattaataaagaaggttttgacgcgcatgaaatacga
gtatgtattcatgatggctacaccttagatgatactcgccgacctaaacgttacagcgac
cagcaatatcttcgtaccagcgaagaaatggtggagctgttcagtgatattcctgaggcc
atagaaaatacggttgaaatcgctaagcgatgcaacgttacagtacgattagacgaatac
tttttgccccagtttcctactggtggcatgaccactgaagatttcttagtcaaagtgtcg
gaagaagggcttgagcgcaggttagcgtttctgtttcctgatgaacaagtacgggcagaa
aaacgccccgagtacgacgacaggctccgtatcgagttagaagtaatcaaccaaatgggt
ttccctggctacttccttatcgtaatggagttcattcagtggagtaaggacaacaatatt
ccagtaggcccaggtcgtggttctggtgcgggctctctagtggcttacgcattagatatt
accgacctcgacccgcttgaattcgacttgctattcgaacgattccttaacccagaacgg
gtatcaatgccggatttcgatgttgatttctgtatggatagacgagatgaagttatcgac
cacgttgccgagctttatggtcgtcaggcggtatcgcagattattacctttggtaccatg
gcggcaaaagccgtggtgcgcgatgtgggccgagtactaggtcacccttacggttttgtg
gaccgtatttcaaagcttattccaccagaccctggtatgacccttgaaaaagcgtttgct
gccgagcctcgtttgcccgaagtgtacgaccaagacgaggaggttaaagatctcatcgat
atggcgcgcattttagaaggcgtaacgcgaaatgcaggtaaacacgctggtggtgtagtt
attgcgccaaccactattaccgattttgcgccgctatactgcgacgatgaaggtaataac
cctgttactcagttcgataaaaacgatgttgaaaccgcagggctagtcaagttcgacttc
cttggattacgtacgctaaccattatccagtgggccattgatatggtgaaggaagggaag
ggtattgacattgatattacctctattcctttggcggatgcaaaaagctttcgtaccctg
ctaaatgcggaaactaccgcggtgttccagttggaatcccgaggtatgaaagagctaata
aaacgtcttaagccagatagttttgaagatattatcgcattggtagccctatttagaccg
ggtcctttgcagtcgggcatggtagataactttatcgaccgtaagcatggccgtgaagct
atttcttatcccgatgctgaataccaacacgaatgtttgcaagaaattctggagcctacc
tacggcattatcttgtatcaagaacaggtaatgcagattgcgcaggaaatggcgggctat
tccctaggtggcgccgatttgttacgtcgtgctatgggtaagaaaaagccagaagaaatg
gctaagcaacgtggcgcgttcgctgaaggctcgaggaacaataacatcgacccagatttg
gcgatgaaaattttcgacttggtagaaaaattcgccggctacgggtttaacaaatctcac
tctgctgcttacgccttggtgtcttatcaaaccttatggttgaaagcccattatcctgct
gaattcatggccgcagtaatgtcggccgatatggataataccgataaaattgttaccttg
gttgatgaatgcagtcgaatgggtcttgagttattgcccccagacttaaatgcaggtaag
cataagttcaccgtcgatgaaaaaggcagaattgtttacggcattggcgccattaaaggg
gtaggtgaaggccccattgaagccattatcgaagccagagaaaaccaaggtgcgtttaaa
gatttattcgatttttgtgcaaaaattgatattaagcgcgttaataaacgggtattggaa
aaactagtacttgccggcgcgttagacaatttagggcctcacagggctgcactcatggca
tctttacctgatgctatcgcagccgcagggcagcatgccaaagcggaatcctttgggcag
tcagacatgttcggattgctaacgactgagcctgatgaagtagagcaagcttttgccgat
gttccgttgtggccagaaaaagtatggttggaaggtgaaaaagataccttaggtttatac
cttacagggcaccctattaatcaatacgtagaagaaattaggcattacactgatggaagg
ttggttgacttaaaacccacaggcaaggagcaaatggcgaatgcagttggcctagtgctt
ggggttagggtaatgaccaataaacggggaagacgctgggctattgtcacacttgatgat
aaaagcgcgcgaatagacgctcgttttttcccggataccttcgaacagtatgaatctatg
ctagaaactgacaaaatattgcttataaagggacaggtcagctttgatgatttctctggg
ggcaatacaatcaccgcccgtgatgtaatggacattgttcaagcacgggagaaaaacgcg
agagcattggcgttaaatgttgagacccagttgcttgaaccgaaaaagattaatcaaatg
caatctatcttgcaggcctttaaaggcggaagttgcccggtgcatttattagtaacccat
cctgatgctgaagcactgattacgtgcggtgcacggtggtttgttacaccagaagatcaa
cttttgcacgatctcaaacaatgtttgggagaaaaagccgtttcaatcctctaccattaa

  All links  
Ontology (4)   
   KEGG BRITE (4)   
Pathway (3)   
   KEGG PATHWAY (3)   
Chemical reaction (1)   
   KEGG ENZYME (1)   
Genome (1)   
   KEGG GENOME (1)   
Gene (3)   
   KEGG ORTHOLOGY (1)   
   NCBI-PROTEINID (1)   
   OC (1)   
Protein sequence (1)   
   UniProt (1)   
Protein domain (6)   
   Pfam (6)   
All databases (19)   

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