KEGG T01168: Alvin

Allochromatium vinosum: Alvin_1488

Entry

Alvin_1488 CDS T01168

Definition

DNA polymerase I (EC:2.7.7.7)

Orthology

K02335

DNA polymerase I [EC:2.7.7.7]

Organism

alv Allochromatium vinosum

Pathway

alv00230	Purine metabolism
alv00240	Pyrimidine metabolism
alv01100	Metabolic pathways
alv03030	DNA replication
alv03410	Base excision repair
alv03420	Nucleotide excision repair
alv03440	Homologous recombination

Class

Metabolism; Nucleotide metabolism; Purine metabolism [PATH:alv00230]
Metabolism; Nucleotide metabolism; Pyrimidine metabolism [PATH:alv00240]
Genetic Information Processing; Replication and repair; DNA replication [PATH:alv03030]
Genetic Information Processing; Replication and repair; Base excision repair [PATH:alv03410]
Genetic Information Processing; Replication and repair; Nucleotide excision repair [PATH:alv03420]
Genetic Information Processing; Replication and repair; Homologous recombination [PATH:alv03440]

SSDB

Motif

Pfam:

DNA_pol_A 5_3_exonuc_N DNA_pol_A_exo1 5_3_exonuc

Other DBs

NCBI-GI:

NCBI-GeneID:

JGI:

UniProt:

Position

complement(1715939..1718674)

AA seq 911 aa
MIPQYPLILVDASGYLFRAYHALPKLTNSRGEPTGALVGVLNMLRKLIEDHRPEYIGVVF
DAGGRGFRHDRYPDYKANRPAMPEDLRAQIEPLRTIIRAMGLPLLVVPGVEADDVIGTLA
TQAAATGLPTLISTGDKDLAQLVGEHVTLINTMTGTRLDPDGVREKFGVPPERIVDYLAL
MGDSVDNVPGVPKCGPKTAAKWIAEYGDLDGVMAQAGTIKGKIGESLRAVLDQLPLARDL
TTIKRDVALDLGPTDLRPTPPDVETLRNWYERLESRRLLATLDGVGVAGAPTAARSHEAE
HSTESEAGTEPQYELILTEAALEDWLSRLQTADLFAFDTETTALDAMQAELVGVSFALEP
GRAAYVPLAHVYPGAPDQLDRDRVLARLKPLLEDPGRPKVGQNLKYDMSVLARYDIALRG
IAHDTLLESYVLDSTARHDLDSLAKRFLDHDTIRFEDVAGKGAKQIGFDQVPLEQAGPYA
AEDAEVTLRLHRVFQPRLAAVPALERLYREIEMPLVPVLSRLERAGVLIDSARLATQSAE
LARKILELEESAYRVAGRRFNLGSPKQIGAIFFDELGLPVVAKTPKGAPSTSEDVLERLA
AEGHELPRIILDHRGLSKLRSTYTDKLPRMVDRDTGRVHTSYHQAVTATGRLSSSDPNLQ
NIPIRTEEGRRIRRAFIAASGHRLLAADYSQIELRIMAHLSGDERLLAAFAGGQDIHRAT
AAEILGLAPEDVTGEQRRSAKAINFGLIYGMSAFGLARQLGIERGAAQEYVDRYFERYPG
VRDFMDRTRRQVREDGYVETLFGRRLHLPEIGHGNQARRAAAERTAINAPMQGTAADIIK
RAMIAVDAWIEAEQPAARLILQVHDELVLEVAESAVEETRARVCAAMETAAELAVPLVVD
IGEGANWDDAH

NT seq 2736 nt +upstreamnt +downstreamnt
atgataccccaatatccattgatcctcgtcgacgcctccggctatctttttcgggcctat
catgcgctgcccaagctgaccaactcgcgaggcgagccgaccggggcgctggttggcgta
ctcaatatgttgcgaaagctcatcgaggatcatcgacccgagtacatcggtgtggtcttc
gatgccggcgggcgcggcttccgtcacgaccgctatcccgactacaaggccaaccgcccg
gcgatgccggaggatctgcgagcgcagatcgagccgctgcggacgatcatccgcgccatg
ggactgccgctgctggtggtgccgggagtcgaggccgatgatgtgatcggaaccctggcc
acgcaagcggcggcaacgggtctgccgaccctgatctcgaccggggacaaggatctggcg
caactggtcggcgaacacgtgaccctgatcaacaccatgaccggcacccggctcgatccg
gacggcgtgcgcgagaagttcggcgtgccgcccgaacgcatcgtcgactatctggccctg
atgggcgacagcgtcgacaacgtccccggcgtgcccaagtgcggccccaagacggcggcc
aagtggatcgccgaatacggcgatctcgacggcgtcatggctcaggccggtacgatcaag
ggcaagatcggcgagtcgctgcgcgcggtgctcgatcagttgccgctggcgcgcgacctc
accaccatcaagcgcgatgtcgcactcgatctcgggccgaccgatctgcgccccaccccg
ccggacgtcgagacgctgcgcaactggtatgagcgactggaatcgcgccgcctgctggcg
acgctcgatggggtcggagtcgccggcgcgccgaccgctgcacgctcgcacgaggccgag
cactcgacggagtccgaggccggcaccgaaccacagtacgagctgatactgaccgaagcg
gctctggaggattggctgagtcgcctgcaaacagccgacctcttcgccttcgacaccgag
accaccgcactcgacgccatgcaggccgagctggtcggcgtctcgttcgcgctcgaaccc
ggacgcgccgcctatgttccgctcgcgcacgtctatccgggcgcacccgatcagctcgac
cgcgatcgcgtcctggcccgattgaagccgcttctggaagaccccggccgccccaaggtc
ggccagaacctcaagtacgacatgagcgtgctcgcccgctatgacatcgccctgcgcggc
atcgctcacgacacactgctcgagagctatgtgctcgacagcaccgcgcgccatgatctg
gactcgctggccaagcgctttctcgaccatgacaccatccgcttcgaggacgtcgccggc
aagggcgccaaacagatcggtttcgatcaggtgccgctggagcaggccggtccctatgcc
gccgaggatgccgaggtcacgctgcgcctgcatcgggtcttccagccgcgtctggcggcc
gtgcccgcgctcgagcgcctctatcgcgagatcgagatgccgctggtgccggtgctctcg
cgcctggaacgcgccggagtgctgatcgacagcgcccggctcgccacgcagagcgccgag
ctggcgcgcaaaatcctcgaactggaggaatccgcctaccgggtcgcgggccgacgcttc
aatctcggctcacccaagcagatcggcgccatcttcttcgacgagctggggctgccggtg
gtcgccaagacgcccaagggcgcgccctcgacctccgaggatgtgctcgaacgtctggcc
gccgagggccatgaactgccccggatcatcctcgaccatcgcggactgtccaagctcagg
tcgacctacaccgacaagctgccgcgcatggtcgaccgcgacaccgggcgcgtccacacc
tcctatcatcaggcggtcacggccaccggacggctgtcgtcgagcgatcccaacctccag
aacatcccgatccgcaccgaggaggggcggcgcatccgccgcgccttcatcgcggcgtcc
ggtcatcgcctgctcgccgccgactattcgcagatcgaactgcggatcatggctcatctc
tcgggcgacgaacgcctgctcgccgccttcgccggcggtcaggacatccatcgcgccacc
gcagccgagatcctggggctggcacccgaggatgtcaccggagaacagcgccgttcggcc
aaggccatcaacttcgggctcatctacggcatgtcggcgttcggactcgcccgtcagctc
ggcatcgagcgcggcgcggctcaggagtacgtcgaccgctatttcgagcgctatccgggc
gtgcgtgacttcatggaccgcacccgccggcaggtgcgcgaggacggctatgtcgagacg
ctcttcggtcgccgactgcacctgcccgagatcggccacggcaaccaggccagacgcgcc
gccgccgagcgtaccgccatcaatgcaccaatgcagggcacggccgccgacatcatcaag
cgcgccatgatcgccgtcgatgcctggatcgaagccgaacagccggcggcccggctcatc
ctccaggtccacgacgaactggtgctggaggttgccgagtcggcggtcgaggaaacccgt
gcacgggtgtgcgccgcgatggagaccgccgccgagctggccgttcccctggtggtcgac
atcggcgagggcgcgaactgggacgacgcgcactga

All links

Pathway (7)   
   KEGG PATHWAY (7)   
Chemical substance (6)   
   KEGG COMPOUND (6)   
Chemical reaction (5)   
   KEGG ENZYME (1)   
   KEGG REACTION (4)   
Genome (1)   
   KEGG GENOME (1)   
Gene (5)   
   KEGG ORTHOLOGY (1)   
   NCBI-Gene (1)   
   NCBI-GI (1)   
   JGI-ALV (1)   
   OC (1)   
Protein sequence (2)   
   UniProt (1)   
   RefSeq(pep) (1)   
Protein domain (4)   
   Pfam (4)   
All databases (30)   

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