KEGG T01578: ARALYDRAFT

Arabidopsis lyrata (lyrate rockcress): ARALYDRAFT_313748

Entry

ARALYDRAFT_313748 CDS T01578

Definition

hypothetical protein

Orthology

K07466

replication factor A1

Organism

aly Arabidopsis lyrata (lyrate rockcress)

Pathway

aly03030	DNA replication
aly03420	Nucleotide excision repair
aly03430	Mismatch repair
aly03440	Homologous recombination

Module

aly_M00288

RPA complex

Class

Genetic Information Processing; Replication and repair; DNA replication [PATH:aly03030]
Genetic Information Processing; Replication and repair; Nucleotide excision repair [PATH:aly03420]
Genetic Information Processing; Replication and repair; Mismatch repair [PATH:aly03430]
Genetic Information Processing; Replication and repair; Homologous recombination [PATH:aly03440]

SSDB

Motif

Pfam:

Rep_fac-A_C Rep-A_N tRNA_anti-codon Fer4_8

Other DBs

NCBI-GI:

NCBI-GeneID:

JGI:

UniProt:

Position

Unknown

AA seq 822 aa
MAVNLTAGAITKILNGEVSSEIDLMPVLQVTELKMIQSNRYKFLLSDGIHLQAGMLNTTL
NSLVIQGSIQLGSIVRLTHYVCSLIQGRRIVIIMQLEVIVAKCDIIGTPNEPGQRGGAAV
PVNTQSNGGFDQQQARRSDVNGGRYGVSANSPQPLVGGLNSSDAGRYGVSASLAQPQVGG
LTVPMLGDMVQRYGTGSGYPETSPSTRPYVSSNAGYGGSRQEQPRAPPATTAYSRPVQSA
YQPQQPPMYVNRGPVARNEAPPRIIPIAALNPYQGRWTIKVRVSSKAELRRFNNPRGEGK
LFSFDLLDADGGEIRVTCFNDAVDQFFDQIVVGNVYLISRGNLKPAQKNYNHLPNDYEIH
LDSASTIQRCEDDGTIPRNQFHFRNISDIENMESNSMTDLIGIVSSIGTTVPIMRKNGTE
VDKRALQLKDMSGRSVEVTMWGNFCSAEGQQLQNLCDSGVFPVLALKAGRIGEFNGKQVS
TIGSSQFFVEPDFPEARELRQWYEREGRNANFTSISREFSGVGRQEVRKVITQIKDEKLG
TSEKPDWITVCATISFMKVENFCYTACPIMNGDRPCSKKVTNNGDGTWRCEKCDKCVDEC
DYRYILQIQLQDHTGLTWATAFQEAGEEIMGMSAKDLYYVKYENQEEEKFEDIIRSVAFT
KYIFKLKIKEETYSDEQRVKATVVKAEKLNYASNTRCMLEAMDKLKIGDANSLPINTESS
NYRSDAVNSGIGTSGTRDTASVDARREFGLPAANQVGQYGNQYSSGARSLGGITSCNACG
SNSHVSANCPSLMSEPQGQYMNGTPGRYNAGGGMPRQNVGSY

NT seq 2469 nt +upstreamnt +downstreamnt
atggcggtgaatttgacggccggagcgataacgaagatattgaatggagaagtgtcgagt
gagatagatttgatgccagtgctacaagtaacggaattgaagatgattcaaagcaatcga
tataagtttttgttatcagatgggattcacttgcaagcaggaatgcttaatactacattg
aacagtttagtgattcaaggcagtattcaattgggttcgattgttagactcactcactat
gtctgcagtctcatccagggtcgaaggattgttataattatgcaattggaggttattgtg
gcgaaatgtgatataattggaactcctaatgaacctgggcaacgcggtggagcggcggtt
cctgttaacacacaaagcaatggtggttttgaccagcaacaagctagaaggagtgatgtc
aatggtgggagatacggtgtatctgctaattcacctcagcctctagttggtggtcttaac
agttccgacgctgggagatatggtgtatcggctagtttggctcagcctcaagttggtggt
ctaacagttccgatgctgggagatatggttcaaagatatggtactggttctggttatccg
gaaacatcaccttccaccagaccgtatgtgagctcaaatgcaggttatggagggtctagg
caggagcaacctcgggctcctcctgcaacaaccgcttattctcgtccagttcagtcagct
tatcagccacaacaaccaccgatgtatgttaataggggacctgtggctaggaacgaagct
cctccgaggataattccgattgctgctcttaatccttaccagggtcggtggaccatcaag
gtcagggtctcgagtaaggcagaactgagacggtttaataatccgcgtggggaagggaaa
ttgttcagttttgatctccttgatgctgatggtggagaaatacgggtgacttgttttaat
gatgcggttgatcaattctttgaccagattgtagttggtaatgtttatctgatatcaagg
ggaaatttgaagcctgcccagaagaactataatcatcttcccaatgattatgaaatacat
ttggattctgcatcaacgatacagcgctgtgaggatgatggtaccattccacgcaatcag
ttccattttcgtaacataagtgatattgaaaacatggagagcaacagcatgactgatcta
attggtattgtttcgtccatcggtaccacagtaccaattatgcggaaaaacggaactgag
gtagataaaagggcacttcagttgaaggatatgtcaggccgtagtgttgaggtaaccatg
tggggtaatttctgcagcgcagaaggacagcaattgcaaaatctttgtgattctggggta
ttcccggttcttgctttgaaagcgggcaggatcggtgaattcaacgggaagcaagtgagc
accattggatcaagtcaattcttcgtagagccagatttccctgaagccagagaattaagg
caatggtatgagagagaaggaaggaatgctaattttacctccatatctagagagttttcc
ggtgttggcagacaagaggttcgcaaggtaattactcagatcaaggacgagaagctaggg
acctcagagaagccggactggatcacagtctgtgccaccatttcattcatgaaggttgaa
aatttctgctatacggcttgtcctatcatgaatggagatcgtccatgcagcaaaaaagtc
acaaataacggagatgggacatggcgttgtgagaagtgtgacaaatgcgtggatgaatgt
gactacaggtatatattgcagatccagttacaggaccatacaggcctaacctgggccaca
gcattccaggaagctggtgaagagataatgggaatgtctgcaaaagatttgtattatgtg
aagtatgaaaatcaggaggaggagaaatttgaagatatcatccgcagtgtcgcttttacc
aagtacattttcaagctgaagattaaagaagaaacttatagcgacgagcaacgggttaaa
gcaacagttgtcaaagctgaaaagctgaactatgcttcaaataccaggtgcatgctagag
gcaatggataaactcaagataggagatgcaaattctctgcctataaatacagagagttcc
aactacaggtctgatgcagttaattccggtattggaacctcaggaactagagacactgcg
tcagtggatgcacgcagagaattcggattacctgcagcaaaccaagtgggtcaatatgga
aatcagtacagtagtggtgcaaggtctcttggcggtattactagctgcaacgcatgtggc
agcaacagccatgtttcggcaaactgcccaagccttatgagtgagccacaaggacaatac
atgaatggcacaccaggaagatacaatgcaggaggaggtatgccaaggcaaaatgttggc
agctactga

All links

Pathway (5)   
   KEGG PATHWAY (4)   
   KEGG MODULE (1)   
Genome (1)   
   KEGG GENOME (1)   
Gene (5)   
   KEGG ORTHOLOGY (1)   
   NCBI-Gene (1)   
   NCBI-GI (1)   
   JGI-ALY (1)   
   OC (1)   
Protein sequence (2)   
   UniProt (1)   
   RefSeq(pep) (1)   
DNA sequence (1)   
   RefSeq(nuc) (1)   
Protein domain (4)   
   Pfam (4)   
All databases (18)   

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