KEGG T01578: ARALYDRAFT

Arabidopsis lyrata (lyrate rockcress): ARALYDRAFT_351685

Entry

ARALYDRAFT_351685 CDS T01578

Definition

hypothetical protein

Orthology

K03253

translation initiation factor 3 subunit B

Organism

aly Arabidopsis lyrata (lyrate rockcress)

Pathway

aly03013

RNA transport

Class

Genetic Information Processing; Translation; RNA transport [PATH:aly03013]

SSDB

Motif

Pfam:

eIF2A

Other DBs

NCBI-GI:

NCBI-GeneID:

JGI:

UniProt:

Position

Unknown

AA seq 1247 aa
MCQNQCEESLSRDVRMIVFPKDRRGHLMVLCLSSKQVVELQICFRKSLKSLSFNCHVSIW
RKWNRSSWTWQWTHYKTTKSLRHTIELASRVHEGTKKDCLYLDVELGTFKFRTYVPGLVI
RSGPDTEVYWNDARQKKPEPVHKRPLPSSELMMFSSYAVVAESYVQWSPLGTYLVTLHKQ
GAAVWGGTDTFTRLMRYQHSMVKLVDFSPGERYLVTYHSQEPSNPRDASKVEIKVFDVRT
GRMMRDFKGSADEFSIGGPGGVAGASWPVFRWAGGKDDRYFAKLSKNTISVYETETFSLI
DKTSMKGGGNQPAKVALVQIPSKVELRQKNLFSVSDCKMYWQSSGEYLAVKVDRYTKTKK
STYSGFELFRIKERDIPIEVLELDNKNDKIIAFAWEPKGHRFAVIHGDQPRPDVSFYSMK
TAQNTGRVSKLATLKAKQANALFWSPTGKYIILAGLKGFNGQLEFFNVDELETMATSEHF
MATDIEWDPTGRYVATAVTSVHEMENGFTMWSFNGNLVYRILKDHFFQLAWRPRPPSFLT
AEKEEEIAKNLKKYSKKYEAEDQDVSLLLSEQDREKRRALKEEWEKWVMQWKSLHEEEKL
ARKNLRDGEVSDVEEDEYEAKEVEFEDLIDVTEEIVQESIDSSVFALQNMEEVADPVNSV
TLTLHDDKQCALWDCMRVHADGSRYCCIPHMDFALAERTIQRPHNMANVRSFIQLDKLVI
PKLVNHLRNPALGITGISNLQHLNVLNASPLDQHIRFPTDLDEREEFNIWVFIWRFVPNR
QLWRQGNDTRRGNYVRTRFYRLFPAVGGTSWRLFRYTINSNTVALYAMEYCKSLAHPPPV
VGVYYRRTCVNASDGVEYLNSATVTDLHSSKNKTEQNEMHSEFLANKGVQHHTPARDLMA
YSDGMISPELLSVRNKSPNENPNWISDPERMVNSGNEKSIRISGLRSRPWDEIRNAANKR
KTPPCSHELHPKSKARKQKPDAERAAKRELLRGVSKNVYKQKRPSSIFMEKSVVLPDFEF
QSPVFRYEAPISSPSPSFTKRTSKETTCQARRFPDFSGKTRDYYFGREFSGDDLGDSDML
AYYNSLEEREAASANLKDNGHVVISPSSLISKVIHITPSSQHSEMDEEEVFGRAVALFIM
AFQKFEKKLKLAAEKKCSEIIASVSEEIHLEGKEDELPRQNSRKDTKNSLIVSTSLNSRG
HQILKHLEGTIKTKLDNASKRIEYVNNCAKRLKRDLKKSVREYLMED

NT seq 3744 nt +upstreamnt +downstreamnt
atgtgccaaaaccagtgtgaagaaagcttgtctcgagatgtgaggatgatagttttccca
aaagaccgtcgtggccatctgatggttctatgtttgagctccaaacaagtggttgagctt
caaatatgctttcgtaaatcactaaagtcattgtcatttaactgtcatgtgagcatatgg
aggaaatggaacagaagttcttggacgtggcaatggacccactacaagactactaagagt
ctaagacacaccattgaattggccagtagagttcatgagggtacaaagaaagattgcttg
tatttggatgtagaacttggtacgtttaagttcaggacctatgtccctgggctagtcatt
cgttctggccctgatactgaagtttactggaatgatgcaaggcagaagaagcctgaacct
gttcataagcgtcctttaccatcatctgaattaatgatgttctcttcctatgcagttgtg
gcagagagttatgtgcagtggtctcctttaggtacataccttgtgacacttcacaagcag
ggggcagctgtttggggtggtactgatacattcacgcgtctcatgcgttatcagcattct
atggtcaaacttgttgatttctcgccaggtgagagatatcttgtaacttaccatagccaa
gaaccaagcaatccgagagatgcaagtaaagtagagattaaggtctttgatgtgagaacc
gggaggatgatgagagatttcaagggtagtgctgatgagttttcaattggaggacctggt
ggtgttgctggcgcctcttggcctgttttcagatgggctggtggaaaagatgatagatac
tttgccaagcttagcaaaaacaccatctctgtctatgagactgagactttcagcctaata
gacaagacatccatgaagggtggtggaaaccaacctgctaaggttgctctagtccaaatc
ccgagcaaggtggagctgaggcagaagaatctcttcagtgtgagcgactgcaagatgtac
tggcagagtagtggagagtatcttgctgttaaggttgatcgatacacaaaaactaagaag
agcacatactctggatttgagcttttccgtatcaaagaaagggatattcccatcgaggtt
cttgagctggataacaagaacgacaagatcattgctttcgcttgggagcccaagggtcac
aggtttgctgtgattcatggtgaccaaccaagaccagatgtcagtttctactcgatgaag
accgcacaaaatactggaagggtttcaaagctcgcaacgttgaaggccaaacaagccaat
gccctcttctggtcgcccacaggaaagtacatcattcttgctgggttaaaaggtttcaat
ggccagcttgaatttttcaacgtggatgagctcgagacaatggcaacatctgaacacttc
atggccacggatatcgaatgggacccaactggaaggtacgttgcaaccgcagtgacatca
gttcacgagatggagaatgggttcaccatgtggtctttcaacgggaatttggtttaccgg
atactgaaggatcatttcttccagttggcttggcgtccaagaccgccatcattcttaact
gcagagaaggaagaagagatagcaaagaacctgaagaagtacagcaagaagtatgaggca
gaggatcaggacgtatcgttgctgttgagtgaacaagacagagagaagaggagggcattg
aaggaagaatgggagaaatgggtgatgcagtggaagtctctgcatgaagaggagaaactc
gcgagaaaaaatcttcgggatggtgaagttagtgatgtggaagaagatgagtatgaagcc
aaagaagttgagtttgaggatcttattgatgtcactgaggaaatcgttcaagagtcgata
gattcgtcggtctttgcactacagaatatggaagaggttgctgatcctgttaatagtgtt
acccttactttgcatgatgataagcaatgcgcgttatgggactgtatgcgtgtccacgca
gatggttctcggtattgctgcataccacacatggactttgcccttgcagaaaggaccatt
caacgaccacataacatggccaatgttcgttcgtttatacagttggataagcttgttatt
ccaaaactcgtcaaccatttaagaaacccggcactcggtatcactggaatatccaatcta
caacatctaaacgttctgaatgcctctccccttgaccaacacatacggttcccaactgat
cttgatgagagggaagagtttaatatttgggttttcatttggcgatttgttcctaaccga
cagctatggcgtcagggaaatgatacacgtcgagggaactatgtcagaacgcgtttctat
cgactcttccctgcggttggtggaacatcgtggaggttatttaggtacacaatcaacagt
aatacagttgcactttacgcaatggagtactgtaagtcactcgctcatccaccgcccgtc
gttggcgtctattacaggagaacttgtgtcaatgcttctgatggagtagaatatttgaat
tcagccacagtaactgatttacactcgagcaagaacaagacggaacaaaacgagatgcat
tcagaatttctggccaacaagggagtacagcatcatacaccagctcgggacttaatggcc
tacagtgatggtatgataagtcccgagctgctgtcggttaggaacaaatcgccaaatgaa
aacccaaattggatctcagacccagagaggatggttaattcagggaatgaaaaatccata
aggatttctggtctaagatcaagaccgtgggatgagattaggaatgcagcaaacaagagg
aaaactccaccttgttcccatgagcttcatccgaagagcaaagccaggaaacaaaaacca
gatgctgaaagagctgctaagagagagttgttacgtggagtctctaaaaatgtctataaa
cagaaaaggccgagtagtattttcatggaaaagtctgttgtgctgccagatttcgaattc
cagagcccagtgtttcgatatgaagcaccaatctcaagtccttccccatcttttactaaa
agaacatctaaagagacaacatgccaagcaaggagattccctgacttctcggggaagaca
agagattattacttcggaagagaattttctggcgatgacttaggtgattcagatatgttg
gcttattacaacagtcttgaagaaagagaagctgcctcagctaatcttaaggacaatggt
catgtagtgataagtccttcctctttgatttcgaaagtgatccatattactccttcctcc
cagcattcagagatggatgaagaggaagtctttggaagggctgttgcattgttcattatg
gcttttcaaaagttcgagaaaaaactgaaactagcagctgagaagaaatgctcagaaatt
atagcatcggtctccgaggagatacatctagaggggaaagaagacgagttacctcgccaa
aactcaaggaaagacaccaaaaactctctcatagtttccacaagcctaaactcacgagga
caccaaatactcaagcatctagaaggaaccatcaagacaaagctggacaatgcctccaaa
agaatcgagtatgtcaacaattgtgcaaaaagattgaagagggatttgaagaagagcgtt
cgagagtatttgatggaagactaa

All links

Pathway (1)   
   KEGG PATHWAY (1)   
Genome (1)   
   KEGG GENOME (1)   
Gene (5)   
   KEGG ORTHOLOGY (1)   
   NCBI-Gene (1)   
   NCBI-GI (1)   
   JGI-ALY (1)   
   OC (1)   
Protein sequence (2)   
   UniProt (1)   
   RefSeq(pep) (1)   
DNA sequence (1)   
   RefSeq(nuc) (1)   
Protein domain (1)   
   Pfam (1)   
All databases (11)   

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