KEGG T01578: ARALYDRAFT

Arabidopsis lyrata (lyrate rockcress): ARALYDRAFT_489433

Entry

ARALYDRAFT_489433 CDS T01578

Definition

TIF3B1

Orthology

K03253

translation initiation factor 3 subunit B

Organism

aly Arabidopsis lyrata (lyrate rockcress)

Pathway

aly03013

RNA transport

Class

Genetic Information Processing; Translation; RNA transport [PATH:aly03013]

SSDB

Motif

Pfam:

eIF2A IKI3 RRM_1 Proteasom_Rpn13

Other DBs

NCBI-GI:

NCBI-GeneID:

JGI:

UniProt:

Position

Unknown

AA seq 739 aa
MAAVVDIDALSAQLGVNWSEVNLDSIQLPPGNNFGIESDDEAVYHDDQSEFDTGFGNIIV
VDHLPVVPKEKFEKLEGVLKKIYNQLGVIKENGLWMPVDPDTKMTLGYCFIEFNTPQETE
LDCLTMVVYILRVCFNVWGSLQEAQNAKEKSHGYKLDKTHIFAVNMFDDFDRLMNVREEW
EPPQARPYVPGENLQKWLTDEKARDQLVIRSGPDTEVYWNDARQKKPEPVHKRPYWTESY
VQWSPLGTYLVTLHKQGAAVWGGADTFTRLMRYQHSMVKLVDFSPGERYLVTYHSQEPSN
PRDASKVEIKVFDVRTGRMMRDFKGSADEFSIGGPGGVAGASWPVFRWAGGKDDKYFAKL
SKNTISVYETETFSLIDKKSMKVDNVVDICWSPTDSILSLFVPEQGGGNQPAKVALVQIP
SKVELRQKNLFSVSDCKMYWQSSGEYLAVKVDRYTKTKKSTYSGFELFRIKERDIPIEVL
ELDNKNDKIIAFAWEPKGHRFAVIHGDQPRPDVSFYSMKTAQNTGRVSKLATLKAKQANA
LFWSPTGKYIILAGLKGFNGQLEFFNVDELETMATAEHFMATDIEWDPTGRYVATAVTSV
HEMENGFTIWSFNGNLVYRILKDHFFQLAWRPRPPSFLTAEKEEEIAKNLKKYSKKYEAE
DQDVSLLLSEQDREKRRALKEEWEKWVMQWKSLHEEEKLERQDLRDGEVSDVEEDEYEAK
EVEFEDLIDVTEEIVQESM

NT seq 2220 nt +upstreamnt +downstreamnt
atggcggcggtagttgatattgatgccctatcggctcagttaggggttaattggtctgag
gttaatctcgattcaatccaacttcctcctggaaacaactttgggatcgagagtgatgat
gaagctgtataccatgatgatcagtcagaattcgacactggatttggtaacattatcgtt
gttgatcacctccctgttgttcccaaggagaagtttgagaaactagaaggtgttctcaag
aaaatttataaccagttaggtgtgattaaggaaaatggactgtggatgcctgttgatccc
gatacgaagatgacattgggctactgttttattgagttcaatactcctcaggagacagaa
ctagattgtttgacaatggtagtgtatattctaagagtttgtttcaatgtctggggctct
ttgcaggaagcacaaaatgctaaggaaaagtcgcatggctacaagttggacaagactcac
atctttgctgttaacatgtttgatgatttcgataggttgatgaatgtgagggaggagtgg
gagcctcctcaggccaggccttatgtccctggggaaaatttgcagaagtggcttaccgat
gaaaaagcccgggaccagctagtcattcgttcaggccctgatactgaagtttactggaat
gatgccaggcagaagaagcctgaacctgttcataagcgtccttattggacagagagttat
gtgcagtggtctcctttaggtacataccttgtgacacttcacaagcagggggcagctgtt
tggggtggtgctgatacattcacgcgtctcatgcgttatcagcattctatggtcaaacta
gttgatttctcgccaggtgagagatatcttgtaacttaccatagccaagaaccaagcaat
ccgagagatgcaagtaaagtagagattaaggtctttgatgtgagaaccgggaggatgatg
agagatttcaagggtagtgctgatgagttttcaattggaggacctggtggtgttgctggt
gcctcttggcctgttttcagatgggctggtggaaaagatgataaatactttgccaagctt
agcaaaaacaccatctctgtctatgagactgagactttcagcctaatagacaagaaatcc
atgaaggttgataatgttgtggatatttgctggtctcccactgattccatcctttcattg
tttgttcctgaacaaggtggtggaaaccaacctgccaaggttgctctagtccaaatcccg
agcaaggtggagctgaggcagaagaatctcttcagtgtgagcgactgcaagatgtactgg
cagagtagtggagagtatcttgctgttaaggttgatcgatacacaaaaactaagaagagc
acatactctggatttgagcttttccgtatcaaagaaagggatattcccatcgaggttctt
gagctggataacaagaacgacaagatcattgctttcgcttgggagcccaagggtcacagg
tttgctgtgattcatggtgaccaaccaagaccagatgtcagtttctactcgatgaagacc
gcacaaaatactggaagggtttcaaagctcgcaacgttgaaggccaaacaagccaatgcc
ctcttctggtcgcccacaggaaagtacatcattcttgctgggttaaaaggtttcaatggc
cagcttgaatttttcaacgtggatgagctcgagacaatggccacagctgaacacttcatg
gccacggatatcgaatgggacccaactggaaggtacgttgcaaccgcagtgacatcagtc
cacgagatggagaatgggttcaccatatggtctttcaacgggaatttggtttaccggata
ctgaaggatcatttcttccagttggcttggcgtccaagaccgccatcattcttaactgca
gagaaggaagaagagatagcaaagaacctgaagaagtacagcaagaagtatgaggcagag
gatcaggacgtgtcgttgctgttgagtgaacaagacagagagaagagaagggcattgaag
gaagaatgggagaaatgggtgatgcagtggaagtctctgcatgaagaggagaaactcgag
aggcaagatcttcgagatggtgaagttagtgatgtggaagaagatgaatatgaagccaag
gaagttgagtttgaggatcttattgatgtcactgaggaaatcgttcaagagtcgatgtaa

All links

Pathway (1)   
   KEGG PATHWAY (1)   
Genome (1)   
   KEGG GENOME (1)   
Gene (6)   
   KEGG ORTHOLOGY (1)   
   NCBI-Gene (1)   
   NCBI-GI (1)   
   JGI-ALY (1)   
   OC (1)   
   PGDBJ (1)   
Protein sequence (2)   
   UniProt (1)   
   RefSeq(pep) (1)   
DNA sequence (1)   
   RefSeq(nuc) (1)   
Protein domain (4)   
   Pfam (4)   
All databases (15)   

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