KEGG T01578: ARALYDRAFT

Arabidopsis lyrata (lyrate rockcress): ARALYDRAFT_491060

Entry

ARALYDRAFT_491060 CDS T01578

Definition

hypothetical protein

Orthology

K03006

DNA-directed RNA polymerase II subunit RPB1 [EC:2.7.7.6]

Organism

aly Arabidopsis lyrata (lyrate rockcress)

Pathway

aly00230	Purine metabolism
aly00240	Pyrimidine metabolism
aly01100	Metabolic pathways
aly03020	RNA polymerase

Module

aly_M00180

RNA polymerase II, eukaryotes

Class

Metabolism; Nucleotide metabolism; Purine metabolism [PATH:aly00230]
Metabolism; Nucleotide metabolism; Pyrimidine metabolism [PATH:aly00240]
Genetic Information Processing; Transcription; RNA polymerase [PATH:aly03020]

SSDB

Motif

Pfam:

RNA_pol_Rpb1_1 RNA_pol_Rpb1_5 RNA_pol_Rpb1_6 RNA_pol_Rpb1_2 RNA_pol_Rpb1_7 RNA_pol_Rpb1_3 RNA_pol_Rpb1_4 RNA_pol_Rpb1_R

Other DBs

NCBI-GI:

NCBI-GeneID:

JGI:

UniProt:

Position

Unknown

AA seq 1839 aa
MDTRFPFSPAEVSKVRVVQFGILSPDEIRQMSVIHVEHSETTEKGKPKVGGLSDIRLGTI
DRKVKCETCMANMAECPGHFGHLELAKPMYHVGFMKTVLSIMRCVCFNCSKILADEVCRN
LSRQAMKIKNPKNRLKKILDACKNKTKCEGGDDIDDVQNQDTDEPVKKSRGGCGAQQPKL
TIEGMKMIAEYKIPRKKNDEPDQLPEPAERKQTLGADRVLSVLKRISDEDCQLLGFNPKF
ARPDWMILEVLPIPPPPVRPSVMMDATSRSEDDLTHQLAMIIRHNENLKRQEKNGAPAHI
ISEFTQLLQFHIATYFDNELPGQPRATQKSGRPIKSICSRLKAKEGRIRGNLMGKRVDFS
ARTVITPDPTINIDELGVPWSIALNLTYPETVTPYNIERLQELVDYGPHPPPGKTGAKYI
IRDDGQRLDLRYLKKSSDQHLELGYKVERHLQDGDFVLFNRQPSLHKMSIMGHRIRIMPY
STFRLNLSVTSPYNADFDGDEMNMHVPQSFETRAEVLELMMVPKCIVSPQANRPVMGIVQ
DTLLGCRKITKRDTFIEKDVFMNTLMWWEDFDGKVPAPAILKPRPLWTGKQVFNLIIPKQ
INLLRYSAWHADTETGFITPGDTQVRIERGELLAGTLCKKTLGTSNGSLVHVIWEEVGPD
AARKFLGHTQWLVNYWLLQNGFTIGIGDTIADSSTMEKINETISNAKTAVKDLIRQFQEK
KLDPEPGRTMTETFENRVNQVLNKARDDAGSSAQKSLAETNNLKAMVTAGSKGSFINISQ
MTACVGQQNVEGKRIPFGFDGRTLPHFTKDDYGPESRGFVENSYLRGLTPQEFFFHAMGG
REGLIDTAVKTSETGYIQRRLVKAMEDIMVKYDGTVRNSLGDVIQFLYGEDGMDAVWIES
QKLDSLKMKKSEFDRTFKYEIDDENWNPTYLSDEHLEDLKGIRELRDVFDAEYSKLETDR
FQLGTEIATNGDSTWPLPVNIKRHIWNAQKTFKIDLRKISDMHPVEIVDAVDKLQERLLV
VPGDDALSVEAQKNATLFFNILLRSTLASKRVLEEYKLSREAFEWVIGEIESRFLQSLVA
PGEMIGCVAAQSIGEPATQMTLNTFHYAGVSAKNVTLGVPRLREIINVAKRIKTPSLSVY
LTPEASKSKEGAKTVQCALEYTTLRSVTQATEVWYDPDPMSTIIEEDFEFVRSYYEMPDE
DVSPDKISPWLLRIELNREMMVDKKLSMADIAEKINLEFDDDLTCIFNDDNAQKLILRIR
IMNDEGPKGELQDESAEDDVFLKKIESNMLTEMALRGIPDINKVFIKQVRKSRFDEEGGF
KTSEEWMLDTEGVNLLAVMCHEDVDPKRTTSNHLIEIIEVLGIEAVRRALLDELRVVISF
DGSYVNYRHLAILCDTMTYRGHLMAITRHGINRNDTGPLMRCSFEETVDILLDAAAYAET
DCLRGVTENIMLGQLAPIGTGDCELYLNDEMLKNAIELQLPSYMDGLEFGMTPARSPVSG
TPYHEGMMSPNYLLSPNMRLSPMSDAQFSPYVGGMAFSPSSSPGYSPSSPGYSPTSPGYS
PTSPGYSPTSPGYSPTSPTYSPSSPGYSPTSPAYSPTSPSYSPTSPSYSPTSPSYSPTSP
SYSPTSPSYSPTSPSYSPTSPAYSPTSPAYSPTSPAYSPTSPSYSPTSPSYSPTSPSYSP
TSPSYSPTSPSYSPTSPAYSPTSPGYSPTSPSYSPTSPSYGPTSPSYNPQSAKYSPSIAY
SPSNARLSPASPYSPTSPNYSPTSPSYSPTSPSYSPSSPTYSPSSPYSSGASPDYSPSAG
YSPTLPGYSPSSTGQYTPHEGEKNAKTGKDVSKDDKSNP

NT seq 5520 nt +upstreamnt +downstreamnt
atggatacgaggtttccgttctcaccggccgaggtctctaaagtccgggtggtccagttt
ggcatactcagccccgatgagatcaggcaaatgtctgttatacatgttgagcatagtgag
acgaccgagaagggtaaacctaaagttggaggattgagtgatatccggcttggtacgatt
gatcggaaggtgaagtgtgagacatgtatggctaatatggccgagtgtccgggacatttt
ggccatcttgagctcgctaagccaatgtatcatgttggttttatgaagacggtgttaagt
atcatgagatgtgtctgcttcaattgctccaagattttagctgatgaggtatgtaggaac
ttatctcgtcaggctatgaagataaagaaccccaagaataggcttaagaagattctggat
gcctgtaaaaacaagaccaaatgtgaaggtggtgatgatattgatgatgtccagaaccaa
gacactgacgaaccagtaaaaaagagccgaggtggatgtggtgcacaacaaccaaagctg
actattgagggtatgaagatgattgcagaatacaaaattccaaggaagaaaaacgatgag
ccagaccagcttccggagcctgcagaaaggaaacagacacttggtgctgatagggttttg
agtgttttgaagaggattagtgatgaggattgtcaactcctagggttcaaccctaagttt
gctcgtcctgactggatgattcttgaagtccttcctatccctccaccccctgtcagacca
tctgtaatgatggatgccacttccagaagtgaggatgacttgacccatcagctagccatg
attattcgacacaatgaaaacttgaaaaggcaggaaaaaaatggagcgccagctcatatt
atatcagagtttacacaactcttgcagtttcatatagctacgtattttgataacgagttg
cctggacagccaagggctactcagaaatcagggaggcctattaaatcaatatgtagtagg
ctgaaggccaaggaaggcagaatcaggggtaacttgatgggaaaacgagttgatttctcg
gcacgtaccgttattacaccagatccaacaataaatattgatgaacttggtgttccgtgg
agtattgccctgaatctcacatacccagaaacagttactccctataacattgaaaggtta
caggagctcgttgattatggaccacatcctccacctggcaagactggagcaaaatatatc
ataagggacgatggccaaagactagatcttcggtaccttaagaagagcagtgatcaacat
ttggaacttggatacaaagtggagcggcatttacaggatggtgattttgttctatttaat
cgtcaaccaagtctgcacaaaatgtctatcatgggtcacaggattaggattatgccatat
tccactttccgtctgaatttgtctgtcacgtctccgtacaatgctgattttgatggggat
gagatgaacatgcatgtaccacagtcattcgagaccagagccgaggtgttagagctgatg
atggttcctaaatgtattgtctccccccaggcgaatcggcctgtgatgggaattgtgcag
gataccctcctagggtgccgtaaaatcacaaagagagataccttcatagagaaggatgta
ttcatgaatacactaatgtggtgggaagacttcgacgggaaagttccggctcctgcaatt
ttgaagcctcgtcctctttggactggcaaacaagtttttaatcttatcataccaaaacag
ataaatctgttgaggtattctgcttggcacgcagatacagagactggattcataactccg
ggggatactcaagtgcgaattgaaagaggggaacttcttgccggaactctttgcaaaaag
acccttggtacatctaatggaagtctcgtgcatgtcatttgggaagaggttggtcctgat
gcagcaaggaaattcctcggccatactcaatggcttgtcaattactggcttctgcagaat
ggttttaccatcggaattggtgacacaattgccgattcatcaacaatggagaaaattaat
gaaactatttccaatgcaaaaactgctgtgaaagatcttatccggcagttccaggaaaag
aaattggaccctgagcctggccgaactatgactgagacatttgagaacagggttaaccag
gttttgaataaagctcgtgatgatgctggaagtagtgctcaaaagagtttagcagaaacc
aataaccttaaggccatggtgacagcaggatccaaaggaagtttcatcaatatttctcaa
atgacagcgtgtgtcggtcagcaaaatgttgaagggaagcgaattccctttggatttgat
gggcggacattgccacatttcaccaaagatgattatggtcctgaaagtcgtggttttgtt
gagaattcatacctgcgtgggttgactcctcaagagttctttttccatgccatgggagga
agagaaggtcttattgatactgctgtgaagacatcagaaactggatacattcagaggcga
ttggtaaaggctatggaggatattatggttaagtatgatgggacagtcagaaactctttg
ggtgatgttattcagtttctctatggagaagatggtatggatgctgtatggatagaatca
cagaagctggattccttgaaaatgaagaaatcagagtttgataggacttttaagtatgag
attgacgacgaaaactggaatcctacatacctaagtgatgaacatctcgaggacttgaag
gggattcgggagttgcgtgatgtatttgatgcagaatattcgaaacttgagactgacaga
ttccaactcgggacagaaattgcaacaaatggtgatagcacttggccattgcctgttaac
atcaagaggcatatctggaatgcgcagaagactttcaaaattgacttgcgcaaaatttcg
gatatgcaccctgttgaaattgttgatgctgttgataaactacaggagaggctgctggtt
gttcctggtgatgatgcgttgagtgtggaagcacagaaaaacgcaacattgttctttaac
attttgcttcgcagcactcttgctagtaaaagagttttggaagaatacaagcttagccgc
gaggcttttgagtgggtcattggtgagatcgaatcgaggtttttacaatctttagtggcc
cctggggaaatgatcggttgtgttgctgcgcaatcaattggagaacctgctacgcagatg
actctgaacaccttccattatgctggtgttagtgcaaagaacgttacacttggagttccc
aggttgcgtgaaattattaatgtagctaagaggatcaaaacaccatccctatcagtctat
ctcactccggaagctagcaaatcaaaagagggggctaagactgttcagtgtgctttggag
tatactactctcaggagtgtcactcaagctacggaagtctggtatgacccagatccaatg
agtactataattgaagaggactttgaatttgtgaggtcctactatgagatgccagatgaa
gatgtttctcccgataaaatatctccttggctacttcgtatagagctgaatcgtgagatg
atggttgataagaaattgagtatggcggatattgcggagaagattaaccttgagttcgat
gatgacctaacttgtatattcaatgatgataatgctcaaaaactgatccttcgaattcgc
attatgaacgatgagggcccaaagggagagttgcaagatgagtcggctgaggatgatgtt
ttccttaaaaagattgagagcaacatgctgacagaaatggctctcagaggtattccagac
atcaacaaggtttttattaaacaggttaggaaaagcaggtttgatgaggagggaggtttc
aagacatctgaggagtggatgttggatacagaaggtgttaatctcttagctgttatgtgc
cacgaagatgtggatccaaagagaacaacaagcaatcacttgattgaaattattgaagtt
ctcggaattgaggcagttcgtcgtgctttgttggatgaactccgtgttgtgatatccttt
gatggttcttatgtgaattaccgtcatcttgccatcttgtgtgatactatgacctatcgc
ggtcatctgatggctatcactcgacatggtatcaatagaaatgacactgggcctctgatg
agatgctcttttgaagaaacagttgatattctgctagatgctgcggcttatgctgagaca
gactgcttaaggggtgttactgagaatataatgttgggtcaacttgcaccaattgggaca
ggagattgtgaattgtatctgaatgatgagatgctgaagaatgcaattgaacttcagctc
cctagctatatggatggtctggaatttggaatgactcctgctcgttcaccagtgtcaggc
actccttaccatgaaggcatgatgtctccaaactacctgttaagtccaaatatgcgtttg
tcgccaatgtcagatgcacagttttctccatatgttggtggaatggccttttcgccttct
tcttctccaggctatagcccatcatcccctggatacagtcctacttctcccggttacagt
cccacttcacctggatatagcccgacttctcccggttatagtccaacttcgcctacctac
agtcccagttctcctggctatagcccaacaagccctgcttattctcctacaagtccttcc
tattctcctacctctccgagctacagcccaacatctccaagctatagccctacgtcgcca
agctacagcccgacatctccgagctacagccctacgtccccaagttacagcccgacttcg
cctgcttacagcccgacttcacctgcatatagcccaacttcaccagcatacagcccaacc
tctccttcttacagcccaacttcaccatcttacagcccaacatcgccttcttacagccct
acttcaccatcttacagtcccacatcaccgtcttatagtcctacttcacccgcatatagc
cccacatctcctggctacagccctacttcaccaagttacagtccaacatcaccaagctac
ggtcctacgtctccaagctacaaccctcagtctgccaaatacagcccatctatagcttac
tctcctagcaatgcaagactatcaccagctagcccctacagtcctacatctccaaactac
agcccgacatcaccatcatactcacccacatctccatcttattcaccttcaagtccaaca
tacagtcccagcagcccgtacagctcaggagcaagccctgactacagcccaagcgcaggc
tactcaccgacacttcccggttattcaccgtcatctacgggtcagtatacaccacatgag
ggcgagaaaaatgccaagactggaaaagatgtcagtaaggatgataaaagcaacccttga

All links

Pathway (5)   
   KEGG PATHWAY (4)   
   KEGG MODULE (1)   
Chemical substance (6)   
   KEGG COMPOUND (6)   
Chemical reaction (5)   
   KEGG ENZYME (1)   
   KEGG REACTION (4)   
Genome (1)   
   KEGG GENOME (1)   
Gene (5)   
   KEGG ORTHOLOGY (1)   
   NCBI-Gene (1)   
   NCBI-GI (1)   
   JGI-ALY (1)   
   OC (1)   
Protein sequence (2)   
   UniProt (1)   
   RefSeq(pep) (1)   
DNA sequence (1)   
   RefSeq(nuc) (1)   
Protein domain (8)   
   Pfam (8)   
All databases (33)   

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