KEGG T01578: ARALYDRAFT

Arabidopsis lyrata (lyrate rockcress): ARALYDRAFT_495190

Entry

ARALYDRAFT_495190 CDS T01578

Definition

hypothetical protein

Orthology

K14310

nuclear pore complex protein Nup205

Organism

aly Arabidopsis lyrata (lyrate rockcress)

Pathway

aly03013

RNA transport

Class

Genetic Information Processing; Translation; RNA transport [PATH:aly03013]

SSDB

Motif

Pfam:

DUF3414

Other DBs

NCBI-GI:

NCBI-GeneID:

JGI:

UniProt:

Position

Unknown

AA seq 1808 aa
MVSPKELVAIVHSSLLGTSLPTPTQRIELTHAIRNSFSSIQNLLSFPPPKPSDRAQVQSK
EIRLPDSLPISLDDQDVAISLKLSDELHLNEIDSVRLLVSANQEWGLMGRDPLEIQRLAT
GLWYTGRRDLTSTLYTLLRAVVLDQGLEPDLIADIQGLLEELIKAGLRQRLITLVKELNR
QDPTGLGGPLCERYLIDSRGALVERRAVVQRERLILGHCLVLSILVDRPGSKDVKDIYYV
FKDNAAQLTEGNDTISSQITFSLLFSLIITFVSDAISGLSDKSSMISQDASFRTDFQDIV
MASGSDPTADGFIGGIRLAWAVHLMLIHDGISGMDTISTASTKDMGHICSCLESIFSKNV
FQFLLDNVLRTAAYQVKESKDMAMSVLNSYRTCDSLDGSMQTEEADRPLPFISLMEFKEP
ELLSGNDVLWTFVNFAGEDHTNFKTLVAFLEMLCTLASTQEGASKVYELLRGTSFRSIGW
PTLFDCIRIYDEKFKQSLQTAGAMMPEFLEGDAKALVAYLNVLQKVVENGNPTERKNWFP
DIEPFFKLLGYENIPPYLKGALRKTIAAFVNVFPEMRDSIWAFLEQYDLPVVVGSPVGKS
DQSSQVYDMQFELNEVEARREQYPSTISFLNLINALIAGEKDVNDRGRRAYSDPCEKWQL
VVACLQHFHMILSMYDIQEEDLDGFTEHPHFLVSVETSSLQTQLPIIELLKDFMSGKALY
RNLMGILQVGVNAIISERLSKTYGKILEKAVQLSLEILLLVFEKDLLVSDVWRPLYQPLD
IILSQDHNQIIALLEYVRYDSLPQIQRSSIKIMNILRCSRLVGLVPMLIKIDAANSLIED
YAACLEVRLEEGEVVENSCDDLGVLIMQLLVDNINRPAPSITHLLLKFDLDAPVEGTVLQ
PKFHYSCLKVILEMLEKLPNPDINFLLFEFGFQLLCELNLDPLTSGPTMDLLSSKKYQFF
LQHLDTIGVATLPKRSGSQALRISSLHQRAWLLKLLAIALHTGSGSSSAHLEACQSILSH
LFGREVTEAANEPFSSSTYPQDGLDYTGTSSISKSKALALLEILQFRSPDTSMQLPQIVS
SLKYDSLVEDILENRDNSVSGSIYYYSERGDRLIDLSSFSNKLWQKLHSGFPLVDSFPNV
AELSEVRETIQQLLKWGWKYNRNLEEQAAQLHMLAGWSQIVEVSACRRISSLDNRSEILY
RILDASLSASASPDCSLKMAFVLTQVALTCIAKLRDDRFSFQGALSSDTVTCLDVMMVKH
LSTGACHSVLFKLVMAILRHESSESLRRRQYALLLSYFQYCQHMIALDVPTSVVQFLLLN
EQDGEDLDIQKIDKEQADLARANFFIIKKEAQGILDLVIKDASQGSEFGKTISLYVLEAL
VCIDHERYFLSQLQSRGFIRSCLGSISNISYQDGTHLLESQQRACTLEAEFALLLRISHK
YGKSGGQVLFSMGALEHIASCRAISFKGNMRRVDMKLQSDVGYNVQKQRTIITAVLRLMF
ALTSLVETSEFFEGRNKIVREVIEFIKGHQFLFDQLLREDFTQADDLLMEQIILAVGILS
KVWPFEENDGYGFVQGLFDMMSNLFIVSPIKLISSQVSELKLSQLRFSLTSYLYFLVTKN
SLRLQVSDDSLDSSTKLRQPTLLLLASLLSHVTDSLERAAEKKSLLLHKIRDINELSRQD
VDAIIKICDCQEYVTPSDNIHKRRYIAMVEMCQIVGNRDQLITLLLQLAEHVLNIILIHL
QDRSVSSNERGSYGSKSHLQQDVTDLCGKLSPTIERLALLNEGKVGHNLKVFQRLATTVK
EMAIQKCL

NT seq 5427 nt +upstreamnt +downstreamnt
atggtgtcgccgaaagagttagtggccatagtacactcttcactgctcggaacgtcactg
ccaactccaacgcagcgtatcgaactcactcatgccattcgcaactcattttcctctatt
cagaacctcctctctttcccgcctccgaagccgtcggacagagcgcaagttcagtccaaa
gaaattcgactcccggattcgctgccaatatctttggatgaccaagatgtcgctattagc
ttgaaactgagtgatgagcttcacctaaatgagatagattctgttcgtctgcttgtatct
gcaaatcaggagtggggcttaatgggacgggaccctcttgagattcaacggcttgcaact
ggactatggtatacagggagaagagatcttacgtcaactctatacacactcctgagggca
gttgttctggaccaggggcttgaacctgatcttatagctgacattcagggactcttagaa
gaacttattaaagctgggctcagacaacggttgattactcttgtaaaggaactcaatcgg
caggatcctactggattgggtgggcccttatgcgagcgataccttattgactcaagaggt
gctcttgttgaacgaagagctgttgttcagagggaaagactgatactgggacattgcctt
gttctttcaattttggttgatagacctggttcgaaagatgtgaaggatatatactacgtt
tttaaagataatgcagctcaattaactgaaggaaatgacaccataagttctcagattact
tttagtcttttgttttctctcatcatcaccttcgtatcagatgcaatcagtggactatct
gataagtcatctatgatatctcaagatgcttcgtttaggacagactttcaggatattgtt
atggcttctggcagtgaccccactgctgatggcttcattggtggcataaggcttgcctgg
gctgtacatttaatgctgatacatgatggaatatctggaatggatacgatttccactgct
tcaacaaaagatatggggcacatatgctcctgcctggagtccatcttctcaaaaaatgtg
tttcaatttttgctggataatgttcttcgaactgcagcctaccaggtgaaggaatcaaag
gacatggctatgagtgttctaaattcttaccgaacttgtgattcgcttgatggaagtatg
cagactgaagaggctgacaggccgctgcccttcatttctcttatggagtttaaggaacct
gagctactctccgggaatgatgtcttgtggacatttgtgaattttgctggagaggaccac
acaaattttaaaactcttgtggctttcttggaaatgctgtgtaccttggcttccactcag
gaaggtgcttctaaagtttatgagttgctccggggtacatcattccgcagtataggatgg
cccactttgtttgattgtataagaatttacgatgagaagttcaagcagtctcttcaaact
gctggagccatgatgccagagttcctggagggcgatgcaaaagcacttgtcgcatatctg
aatgtacttcagaaggttgttgagaatggtaatcccactgagaggaaaaactggtttcct
gatatcgaaccattttttaagcttcttggttatgaaaacatccctccatatctgaagggt
gctcttagaaagaccattgctgcctttgttaatgtctttccagaaatgagggactctatc
tgggcttttcttgagcagtatgatctgcctgttgttgtgggatcaccagttggaaagagt
gaccaatcttctcaggtctatgatatgcaatttgagttaaatgaagtggaagcaaggaga
gaacagtatccttcaacaatatcgttccttaatcttataaacgctctgattgctggggag
aaagatgtgaatgatcgtgggcgtagggcatattctgatccttgtgagaagtggcaattg
gttgtggcatgccttcaacattttcacatgatcttaagcatgtatgatattcaggaggag
gatctcgatggatttactgagcatccacattttttggtgtcagttgaaacatcttcactg
caaacgcagctaccaattatagaattactaaaagatttcatgagtgggaaagctctctac
aggaacctcatgggtatccttcaggttggggtcaatgccatcatcagcgagcgattgagt
aaaacttatgggaagatcttagaaaaggcagtacaactttctttggaaatcttactgctc
gtctttgagaaggatttgcttgtttccgatgtttggcgtccgctgtaccagcctttggat
ataattctctcacaagatcataatcaaattatagccttgctggagtatgtcagatatgat
tctcttcctcagattcagcgatcttcaatcaaaatcatgaacattttaaggtgttctcgc
ttggttggacttgttccaatgctgatcaaaattgatgctgcgaattccttgatcgaggat
tatgcggcctgccttgaggtacgacttgaagagggtgaagttgtagagaacagttgtgat
gatctgggggtccttattatgcagcttctggttgacaatatcaaccggcctgcaccaagt
atcacacatttgcttctgaagtttgaccttgacgcccctgtggaagggacagttttgcag
cctaagtttcactacagttgtctgaaggtcattcttgaaatgttggagaagcttccaaac
cccgatataaacttcttactctttgagtttggcttccagcttttgtgtgagttgaatttg
gatccgttaactagtggtccaaccatggatctcttgagcagcaagaaatatcagtttttt
ctccagcacctcgataccattggtgttgccactcttccaaaaagaagtggcagccaggca
ctccgtattagttcccttcatcagagggcgtggctattaaagctcctagctattgcactg
catactggttctggaagcagttcagctcacctagaggcatgtcagagcatactttctcat
ctttttgggcgggaggtaactgaagcagcgaatgaacctttttcttccagtacatatcct
caggatggtcttgattatactggaacgagttcaatcagtaaaagtaaggcattggctttg
cttgaaattcttcagtttagatctcctgatacttcgatgcagcttcctcaaattgtgtcc
agcctaaagtatgactcactggtggaggacatacttgagaaccgtgataactctgttagt
ggcagtatctactactattctgagcgtggtgatcggctaattgatctatcttccttcagc
aacaaactctggcagaagctacattctggatttcccctagtggatagttttccaaatgtt
gctgagcttagtgaagttagagagacaattcaacagctgttgaaatggggctggaagtat
aatcgaaaccttgaggagcaagctgcccaacttcatatgttagctggctggtctcagatt
gttgaggtgtctgcttgcaggagaatatcttctcttgataatcggtctgaaattttgtac
cggatacttgatgcctctcttagtgcctccgcgtctccagattgttcattaaaaatggcg
ttcgtacttactcaggttgcccttacctgcattgccaaacttcgtgatgatagattttca
tttcaaggggccttgagttctgacaccgtgacatgtctagatgttatgatggtcaaacat
ttatccactggtgcttgccactcagttctatttaaacttgttatggcaattctaaggcat
gagtcatcagaatctttgagaaggcgccaatatgcattgctcttgagctatttccagtac
tgccagcatatgattgctctggatgtgccaacatcagttgtgcagttcttgttacttaat
gagcaagacggtgaagatttggatatccagaagattgacaaggagcaggctgaccttgct
cgtgccaacttttttataataaagaaagaagctcagggcatcttggatctggtaatcaag
gatgcaagtcaaggcagtgagtttgggaaaacaatatcactttatgtgctggaagctctt
gtttgtattgatcacgagagatattttcttagtcagctccagagccgaggtttcatacgg
tcttgccttggaagcattagtaatatctcctaccaggatggaacacatttgctggagtca
caacagcgagcatgtaccttagaagcagaatttgcattgctacttagaattagtcacaag
tacggaaagtctggaggccaggttctgttctccatgggtgcgctggaacatatcgcttca
tgtagagctatcagctttaagggaaatatgagacgggtggatatgaaacttcagagtgat
gtaggatataatgtgcaaaagcaacgaacaataatcactgctgtcctaagactgatgttt
gctctaacctcattggttgagacctctgaatttttcgaggggaggaataaaattgttcgt
gaagtcattgagtttatcaaaggacatcaatttctttttgaccaacttcttcgggaagac
tttactcaagcagatgatttattgatggagcaaattattcttgcagtgggaatattgagc
aaggtctggccttttgaagagaacgatggatatggatttgttcaagggctttttgatatg
atgagcaaccttttcatcgtctcccccataaaattgatatcatcgcaggtatcagagctc
aaattgtctcagttgcgattcagcttgacttcttacttatattttctggtgaccaaaaac
tctctgaggttgcaggtttccgatgattctcttgatagttccactaaactacgccaacca
acgttactgttgcttgcatctcttctttcgcatgtgactgattccctcgagagagcagca
gagaaaaagtccttacttcttcataagattagagacataaacgagctctcaagacaagat
gtagatgcgatcatcaagatatgtgattgccaagaatatgtcacaccgtccgacaacata
cataaaaggagatacatagctatggttgaaatgtgccaaatcgtgggtaacagggaccag
ttaatcaccttgttactacaacttgccgagcatgtactaaatattatcctgatccatctc
caagatagatccgttagttcaaatgaaaggggatcatatggttcaaaatcccatctacaa
caggatgttacagatctatgtggcaaattgtcacctaccatagagaggcttgcattactg
aatgagggaaaagtaggacataacctgaaggtgttccagagactggcaacgactgtaaaa
gaaatggccatccaaaagtgtttatga

All links

Pathway (1)   
   KEGG PATHWAY (1)   
Genome (1)   
   KEGG GENOME (1)   
Gene (5)   
   KEGG ORTHOLOGY (1)   
   NCBI-Gene (1)   
   NCBI-GI (1)   
   JGI-ALY (1)   
   OC (1)   
Protein sequence (2)   
   UniProt (1)   
   RefSeq(pep) (1)   
DNA sequence (1)   
   RefSeq(nuc) (1)   
Protein domain (1)   
   Pfam (1)   
All databases (11)   

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