KEGG   Alteromonas mediterranea DE1: amad1_18785
Entry
amad1_18785       CDS       T02340                                 
Name
(GenBank) RNA-binding protein Hfq
  KO
K03666  host factor-I protein
Organism
amaa  Alteromonas mediterranea DE1
Pathway
amaa02024  Quorum sensing
amaa03018  RNA degradation
Brite
KEGG Orthology (KO) [BR:amaa00001]
 09120 Genetic Information Processing
  09123 Folding, sorting and degradation
   03018 RNA degradation
    amad1_18785
 09140 Cellular Processes
  09145 Cellular community - prokaryotes
   02024 Quorum sensing
    amad1_18785
 09180 Brite Hierarchies
  09182 Protein families: genetic information processing
   03019 Messenger RNA biogenesis [BR:amaa03019]
    amad1_18785
   03036 Chromosome and associated proteins [BR:amaa03036]
    amad1_18785
Messenger RNA biogenesis [BR:amaa03019]
 Prokaryotic type
  Bacterial mRNA degradation factors
   Other RNA degradation factors
    Chaperones
     amad1_18785
Chromosome and associated proteins [BR:amaa03036]
 Prokaryotic type
  Nucleoid associated proteins
   Other nucleoid associated proteins
    amad1_18785
SSDB
Motif
Pfam: Hfq LSM
Other DBs
NCBI-ProteinID: AFV87234
Position
complement(4259901..4260149)
AA seq 82 aa
MAKGQSLQDPFLNALRKERIPVSIYLVNGIKLQGQVESFDQFVILLKNTVSQMVYKHAIS
TVVPARAITMPSAGDSENTKGE
NT seq 249 nt   +upstreamnt  +downstreamnt
atggctaaagggcaatctttacaagacccattcttaaacgctttgcgtaaggaacgtata
ccagtatcaatttatctggtaaacggtatcaaacttcaggggcaggttgagtcattcgac
cagttcgttattctactgaagaacacagtaagccaaatggtgtataagcacgcaatttct
actgttgttccagcacgcgctatcacaatgccaagcgcaggagattctgaaaatactaaa
ggtgaataa

  All links  
Ontology (3)   
   KEGG BRITE (3)   
Pathway (2)   
   KEGG PATHWAY (2)   
Genome (1)   
   KEGG GENOME (1)   
Gene (3)   
   KEGG ORTHOLOGY (1)   
   NCBI-PROTEINID (1)   
   OC (1)   
Protein domain (2)   
   Pfam (2)   
All databases (11)   

Download RDF
DBGET integrated database retrieval system