KEGG T02723: I636

Alteromonas mediterranea UM4b: I636_01805

Entry

I636_01805        CDS       T02723

Name

(GenBank) DNA topoisomerase

K03168

DNA topoisomerase I [EC:5.6.2.1]

Organism

amad Alteromonas mediterranea UM4b

Brite

KEGG Orthology (KO) [BR:amad00001]
09180 Brite Hierarchies
  09182 Protein families: genetic information processing
   03032 DNA replication proteins [BR:amad03032]
    I636_01805
   03400 DNA repair and recombination proteins [BR:amad03400]
    I636_01805
Enzymes [BR:amad01000]
5. Isomerases
  5.6  Isomerases altering macromolecular conformation
   5.6.2  Enzymes altering nucleic acid conformation
    5.6.2.1  DNA topoisomerase
     I636_01805
DNA replication proteins [BR:amad03032]
Prokaryotic type
  DNA Topoisomerases
   I636_01805
DNA repair and recombination proteins [BR:amad03400]
Prokaryotic type
  DSBR (double strand breaks repair)
   NHEJ (non-homologous end-joining)
    SHIIR (short-homology-independent illegitimate recombination)
     Facilitator
      I636_01805

SSDB

Motif

Pfam:

Topoisom_I Top1B_N_bact

Other DBs

NCBI-ProteinID:

AGQ00237

Position

392771..393793

AA seq 340 aa
MHEDDSHLSIKRIACGNKRFYYRYASGKKVTGQRVINRIKKLVIPPNWRDTFISRDSKAS
VQAIGYDEKGRKQYIYHEKWHEQQQVQKFERLIAFGNALPAFREHCISLISQSSWTLERA
CALVCLLLDYTGARVGNTQYSKENNTYGLTTLRRKHVQAQCDDSVELAYIGKHGKPRTLK
VNDPELASLICDCAQQQGYCLFRYQDNRKQWHDVTSEDVNAFIHEKLSEQFSCKDFRTWA
SSRFALTVMPNVYERVASSKTKKWESTLSKTVSAELGNTPAVCRKYYIHPKLFVIKNQGE
AFEKTLNRVRSLAGEDCTHITHLLPVEKLLLDVISTKSNE

NT seq 1023 nt +upstreamnt +downstreamnt
gtgcatgaagatgatagccacctatcaattaagcgcattgcgtgcggaaataaacgtttt
tactatcggtacgccagtggtaagaaagttactggtcaacgtgtgataaaccgcataaag
aaactagttatcccaccgaattggcgagatacctttatcagccgcgacagtaaggcgagt
gttcaggcgattggatacgatgaaaaaggtcgtaagcaatacatttatcatgagaagtgg
catgagcaacagcaggtacaaaagtttgagcggttgattgcttttggcaatgcccttcca
gcgtttcgagagcattgcatttctctcatttctcaatcttcctggacgctagagcgtgca
tgtgcgcttgtttgtcttttattagactacactggcgctagggtagggaatacgcagtac
agtaaagagaacaacacctatgggcttacgacgctgcgacgcaaacacgttcaggcgcag
tgcgacgacagtgtagaacttgcgtacatagggaaacatgggaaaccgcgaaccctgaaa
gtgaatgacccagaattggcgtctttaatatgtgattgcgcacaacaacaaggttattgc
ttatttcgctatcaagataaccgtaaacaatggcacgatgtaacgagcgaagatgtgaac
gcgtttatacatgagaagctgagcgaacaatttagttgtaaggactttaggacttgggcg
tcgagccgttttgccctaacggtgatgcccaacgtatatgaacgtgtagcaagttcaaaa
actaaaaagtgggaaagcacattaagtaaaaccgtatcagctgaactaggcaatacgcca
gcggtttgcagaaaatattatattcacccgaaactatttgttattaaaaaccagggggaa
gctttcgaaaagacgctaaatcgtgtgcgatcgctggctggtgaagattgtacacatatc
acgcacttactgcctgtagaaaagcttcttttggatgttatttctactaagagcaatgag
tga

All links

Ontology (4)   
   KEGG BRITE (4)   
Chemical reaction (1)   
   KEGG ENZYME (1)   
Genome (1)   
   KEGG GENOME (1)   
Gene (3)   
   KEGG ORTHOLOGY (1)   
   NCBI-PROTEINID (1)   
   OC (1)   
Protein domain (2)   
   Pfam (2)   
All databases (11)   

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